Wall clock time and date at job start Wed Apr 1 2020 02:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38384 * 119.92275 * 2 1 4 4 C 1.38340 * 120.29057 * 179.97438 * 3 2 1 5 5 C 1.37984 * 120.14222 * 359.74440 * 4 3 2 6 6 C 1.39550 * 119.85166 * 0.52765 * 5 4 3 7 7 C 1.47846 * 120.14318 * 179.74823 * 6 5 4 8 8 O 1.21551 * 120.00189 * 230.83598 * 7 6 5 9 9 N 1.34780 * 119.99824 * 50.82898 * 7 6 5 10 10 C 1.46837 * 120.41319 * 5.50719 * 9 7 6 11 11 C 1.53365 * 109.25063 * 127.75042 * 10 9 7 12 12 C 1.52785 * 108.81496 * 53.83461 * 11 10 9 13 13 H 1.09000 * 109.34528 * 57.16287 * 12 11 10 14 14 O 1.42613 * 111.11163 * 177.46919 * 12 11 10 15 15 C 1.43142 * 113.63306 * 183.61212 * 14 12 11 16 16 C 1.53190 * 109.74251 * 298.31910 * 15 14 12 17 17 N 1.47348 * 108.80700 * 51.20775 * 16 15 14 18 18 C 1.36930 * 121.30901 * 130.03330 * 17 16 15 19 19 H 1.08009 * 120.00144 * 210.85574 * 18 17 16 20 20 C 1.38818 * 120.00286 * 30.84947 * 18 17 16 21 21 N 1.31620 * 119.99261 * 11.72153 * 20 18 17 22 22 Si 1.86801 * 120.00331 * 191.72448 * 20 18 17 23 23 H 1.48491 * 109.46825 * 89.99958 * 22 20 18 24 24 H 1.48497 * 109.46924 * 209.99897 * 22 20 18 25 25 H 1.48497 * 109.46628 * 329.99965 * 22 20 18 26 26 C 1.46881 * 117.38799 * 309.76211 * 17 16 15 27 27 H 1.09001 * 109.65344 * 292.35316 * 26 17 16 28 28 C 1.47305 * 119.86979 * 185.06685 * 9 7 6 29 29 C 1.37937 * 119.92976 * 180.02562 * 2 1 3 30 30 C 1.50700 * 120.07187 * 0.02696 * 29 2 1 31 31 H 1.09000 * 109.47120 * 269.97794 * 1 2 3 32 32 H 1.08995 * 109.47206 * 29.98367 * 1 2 3 33 33 H 1.09003 * 109.46580 * 149.98392 * 1 2 3 34 34 H 1.08000 * 119.85469 * 0.02562 * 3 2 1 35 35 H 1.07996 * 119.92699 * 179.97438 * 4 3 2 36 36 H 1.08002 * 120.06690 * 180.25266 * 5 4 3 37 37 H 1.09003 * 109.50148 * 7.82317 * 10 9 7 38 38 H 1.08995 * 109.54922 * 247.71038 * 10 9 7 39 39 H 1.09004 * 109.57939 * 294.03651 * 11 10 9 40 40 H 1.08999 * 109.57949 * 173.63740 * 11 10 9 41 41 H 1.09003 * 109.42416 * 58.39650 * 15 14 12 42 42 H 1.08996 * 109.42721 * 178.28769 * 15 14 12 43 43 H 1.09004 * 109.58260 * 291.40992 * 16 15 14 44 44 H 1.09006 * 109.58345 * 171.00560 * 16 15 14 45 45 H 0.97005 * 119.99718 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.21635 * 113.24524 * 28 9 7 47 47 H 1.08999 * 110.31554 * 352.52376 * 28 9 7 48 48 H 1.08996 * 109.46744 * 266.63781 * 30 29 2 49 49 H 1.08998 * 109.47089 * 26.64213 * 30 29 2 50 50 H 1.09008 * 109.46692 * 146.63906 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2083 0.0005 5 6 4.2812 0.0195 0.0064 6 6 3.5911 -1.1935 0.0006 7 6 4.3353 -2.4710 0.0012 8 8 4.0705 -3.3290 -0.8180 9 7 5.3074 -2.6841 0.9101 10 6 5.5541 -1.7067 1.9778 11 6 5.5445 -2.4249 3.3329 12 6 6.5361 -3.5861 3.2822 13 1 7.5247 -3.2058 3.0251 14 8 6.6094 -4.2543 4.5400 15 6 7.5842 -5.3019 4.5773 16 6 7.2247 -6.3801 3.5502 17 7 6.9953 -5.7354 2.2452 18 6 7.6053 -6.1936 1.1082 19 1 7.8524 -5.5056 0.3131 20 6 7.9063 -7.5425 0.9773 21 7 7.4071 -8.4136 1.8284 22 14 9.0196 -8.1211 -0.4066 23 1 10.4310 -8.1056 0.0544 24 1 8.6426 -9.5024 -0.8004 25 1 8.8700 -7.2153 -1.5737 26 6 6.0819 -4.5857 2.2108 27 1 5.0663 -4.9178 2.4263 28 6 6.1221 -3.9093 0.8393 29 6 2.1952 -1.1954 -0.0005 30 6 1.4417 -2.5005 -0.0017 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3632 -0.8899 -0.5141 34 1 1.6537 2.1326 0.0004 35 1 4.1134 2.1477 0.0001 36 1 5.3612 0.0278 0.0109 37 1 4.7728 -0.9468 1.9631 38 1 6.5242 -1.2345 1.8230 39 1 4.5443 -2.8073 3.5365 40 1 5.8380 -1.7278 4.1178 41 1 8.5665 -4.8915 4.3432 42 1 7.6038 -5.7435 5.5736 43 1 6.3190 -6.8980 3.8660 44 1 8.0451 -7.0929 3.4664 45 1 7.6171 -9.3562 1.7368 46 1 7.1494 -3.6432 0.5903 47 1 5.7232 -4.5859 0.0835 48 1 1.3119 -2.8460 1.0239 49 1 0.4648 -2.3556 -0.4628 50 1 2.0038 -3.2440 -0.5672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074394159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:33 Heat of formation + Delta-G solvation = -43.137727 kcal Electronic energy + Delta-G solvation = -31647.225220 eV Core-core repulsion = 27639.245237 eV Total energy + Delta-G solvation = -4007.979983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.88731 -40.61039 -39.45040 -37.50776 -36.56506 -34.50827 -33.65730 -33.15425 -32.79617 -31.42767 -29.22811 -28.49617 -27.41311 -26.80585 -25.55359 -24.48294 -23.48978 -22.59847 -21.74042 -21.44560 -20.22877 -18.73591 -18.35775 -17.44796 -17.18690 -17.02317 -16.83332 -16.68427 -16.37155 -15.99401 -15.65947 -15.39461 -15.11549 -15.03731 -14.78465 -14.70984 -14.48270 -14.09294 -13.96437 -13.86028 -13.66319 -13.52573 -13.36745 -13.02475 -12.87667 -12.82913 -12.72002 -12.59373 -12.49206 -12.37417 -12.33273 -12.07285 -11.95974 -11.78710 -11.76726 -11.28745 -10.88753 -10.74936 -10.57197 -9.81743 -9.68033 -9.50842 -8.73232 -7.94504 -5.47938 0.02947 0.39883 1.42211 1.43850 1.52392 1.56686 1.86186 2.43570 2.72656 2.80713 3.21541 3.39330 3.41355 3.78826 3.84515 3.87481 3.92820 4.01811 4.12002 4.14878 4.19934 4.23456 4.35913 4.41618 4.45777 4.49744 4.52951 4.59867 4.61993 4.68790 4.72067 4.77603 4.82107 4.85823 4.94122 4.95346 4.97033 5.05209 5.09167 5.12768 5.24761 5.35084 5.42149 5.43154 5.49470 5.51316 5.58422 5.66286 6.02004 6.23920 6.30341 6.32028 7.02110 7.03005 7.67752 8.25405 9.11504 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.003310 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.841459 B = 8456.240977 C = 9337.393851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.097 4.097 3 C -0.093 4.093 4 C -0.119 4.119 5 C -0.094 4.094 6 C -0.142 4.142 7 C 0.554 3.446 8 O -0.581 6.581 9 N -0.603 5.603 10 C 0.110 3.890 11 C -0.115 4.115 12 C 0.083 3.917 13 H 0.061 0.939 14 O -0.393 6.393 15 C 0.052 3.948 16 C 0.149 3.851 17 N -0.605 5.605 18 C -0.264 4.264 19 H 0.073 0.927 20 C -0.045 4.045 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.271 1.271 26 C 0.135 3.865 27 H -0.002 1.002 28 C 0.140 3.860 29 C -0.058 4.058 30 C -0.136 4.136 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.116 0.884 41 H 0.052 0.948 42 H 0.110 0.890 43 H -0.005 1.005 44 H 0.068 0.932 45 H 0.252 0.748 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.093 0.907 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 24.587 1.600 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 C -0.111 4.111 4 C -0.136 4.136 5 C -0.112 4.112 6 C -0.145 4.145 7 C 0.344 3.656 8 O -0.461 6.461 9 N -0.335 5.335 10 C -0.011 4.011 11 C -0.154 4.154 12 C 0.024 3.976 13 H 0.079 0.921 14 O -0.312 6.312 15 C -0.026 4.026 16 C 0.023 3.977 17 N -0.330 5.330 18 C -0.394 4.394 19 H 0.091 0.909 20 C -0.241 4.241 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.196 1.196 26 C 0.028 3.972 27 H 0.016 0.984 28 C 0.018 3.982 29 C -0.059 4.059 30 C -0.192 4.192 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.158 0.842 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.071 0.929 42 H 0.127 0.873 43 H 0.013 0.987 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.111 0.889 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.761 24.006 1.329 25.589 hybrid contribution 0.734 -1.957 -0.920 2.284 sum -8.027 22.049 0.409 23.468 Atomic orbital electron populations 1.20927 0.89210 1.03816 1.03368 1.20017 0.97595 0.91762 1.00313 1.21603 0.94585 0.98035 0.96899 1.21428 0.94424 0.98235 0.99526 1.21443 1.00778 0.90831 0.98153 1.19629 0.93955 0.92460 1.08471 1.19054 0.78801 0.87380 0.80349 1.90732 1.67057 1.47294 1.41046 1.48339 1.34165 1.21698 1.29300 1.22145 1.04641 0.90488 0.83832 1.21878 0.98657 0.96203 0.98650 1.22477 0.99173 0.92166 0.83807 0.92117 1.87750 1.60665 1.49714 1.33039 1.23188 0.90900 0.88268 1.00222 1.21270 0.98469 0.93682 0.84250 1.44296 1.50307 1.33908 1.04473 1.19419 1.32010 0.91090 0.96866 0.90914 1.25958 1.01508 0.96120 1.00493 1.70156 1.46521 1.01454 1.39866 0.85258 0.78826 0.77020 0.79319 1.20260 1.22211 1.19621 1.21419 0.91784 0.89209 0.94777 0.98406 1.21331 0.94557 0.85363 0.96995 1.19851 0.91727 0.96254 0.98018 1.21073 1.01071 0.94619 1.02432 0.90042 0.89473 0.91390 0.82464 0.82072 0.84199 0.86561 0.88292 0.92154 0.86533 0.92937 0.87255 0.98721 0.91363 0.93925 0.90576 0.92004 0.91420 0.88860 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.60 71.24 0.68 -0.75 16 2 C -0.10 -1.70 5.87 -19.90 -0.12 -1.82 16 3 C -0.09 -1.22 9.69 22.33 0.22 -1.00 16 4 C -0.12 -1.55 10.03 22.23 0.22 -1.33 16 5 C -0.09 -1.76 7.65 22.53 0.17 -1.58 16 6 C -0.14 -3.78 4.71 -20.09 -0.09 -3.87 16 7 C 0.55 19.54 6.66 86.79 0.58 20.11 16 8 O -0.58 -26.03 14.29 -3.88 -0.06 -26.08 16 9 N -0.60 -19.85 2.99 -821.65 -2.46 -22.31 16 10 C 0.11 2.50 5.35 86.44 0.46 2.97 16 11 C -0.12 -3.00 5.82 30.65 0.18 -2.82 16 12 C 0.08 2.95 2.50 30.66 0.08 3.02 16 13 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 14 O -0.39 -15.06 10.49 -148.98 -1.56 -16.62 16 15 C 0.05 2.01 6.95 72.05 0.50 2.51 16 16 C 0.15 7.43 5.37 86.28 0.46 7.89 16 17 N -0.60 -31.50 3.03 -673.89 -2.04 -33.54 16 18 C -0.26 -14.71 8.79 84.04 0.74 -13.97 16 19 H 0.07 3.93 6.35 -2.91 -0.02 3.91 16 20 C -0.04 -2.55 5.05 84.86 0.43 -2.12 16 21 N -0.93 -56.39 11.20 21.65 0.24 -56.15 16 22 Si 0.97 45.83 29.57 68.60 2.03 47.86 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 C 0.14 6.06 2.99 45.05 0.13 6.20 16 27 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 28 C 0.14 5.84 4.55 86.22 0.39 6.23 16 29 C -0.06 -1.43 5.91 -19.61 -0.12 -1.54 16 30 C -0.14 -3.62 9.20 71.24 0.66 -2.97 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 33 H 0.07 0.90 5.90 -2.39 -0.01 0.88 16 34 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.14 2.22 7.51 -2.91 -0.02 2.20 16 37 H 0.12 2.14 5.26 -2.39 -0.01 2.13 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 43 H -0.01 -0.30 8.14 -2.38 -0.02 -0.31 16 44 H 0.07 3.70 6.39 -2.38 -0.02 3.69 16 45 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 46 H 0.08 3.06 7.33 -2.39 -0.02 3.05 16 47 H 0.06 3.09 6.82 -2.39 -0.02 3.07 16 48 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.09 1.96 5.82 -2.39 -0.01 1.94 16 50 H 0.05 1.91 5.70 -2.38 -0.01 1.89 16 Total: -1.00 -76.62 380.60 2.68 -73.94 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.95 Total: 17.74 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 5.58 Total: 15.16 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -4.26 Total: -112.00 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -1.62 Total: -42.70 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -76.62 2.68 -73.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074394159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.807 kcal (2) G-P(sol) polarization free energy of solvation -76.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds