Wall clock time and date at job start Wed Apr 1 2020 02:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38381 * 119.85126 * 2 1 4 4 C 1.37929 * 120.14768 * 179.72136 * 3 2 1 5 5 C 1.39603 * 119.84938 * 0.48824 * 4 3 2 6 6 C 1.47845 * 120.14291 * 179.79068 * 5 4 3 7 7 O 1.21554 * 119.99873 * 134.77360 * 6 5 4 8 8 N 1.34775 * 120.00108 * 314.77599 * 6 5 4 9 9 C 1.46983 * 120.72553 * 354.51847 * 8 6 5 10 10 C 1.53152 * 108.44144 * 234.57778 * 9 8 6 11 11 C 1.52499 * 109.80344 * 305.47058 * 10 9 8 12 12 H 1.08997 * 108.94022 * 178.98329 * 11 10 9 13 13 O 1.42700 * 110.61987 * 298.68511 * 11 10 9 14 14 C 1.43075 * 113.87545 * 185.34659 * 13 11 10 15 15 C 1.53228 * 109.45034 * 298.35054 * 14 13 11 16 16 N 1.47189 * 108.69233 * 51.58457 * 15 14 13 17 17 C 1.36931 * 121.21821 * 129.04038 * 16 15 14 18 18 H 1.08009 * 120.00134 * 220.98420 * 17 16 15 19 19 C 1.38808 * 120.00584 * 40.98348 * 17 16 15 20 20 N 1.31618 * 120.00464 * 214.34074 * 19 17 16 21 21 Si 1.86802 * 119.99731 * 34.33421 * 19 17 16 22 22 H 1.48506 * 109.47220 * 84.46095 * 21 19 17 23 23 H 1.48496 * 109.47237 * 204.45886 * 21 19 17 24 24 H 1.48496 * 109.47204 * 324.46105 * 21 19 17 25 25 C 1.47590 * 117.55707 * 309.05891 * 16 15 14 26 26 H 1.08999 * 111.15840 * 172.78003 * 25 16 15 27 27 C 1.46795 * 120.72064 * 174.54131 * 8 6 5 28 28 C 1.39556 * 119.71030 * 359.50895 * 5 4 3 29 29 C 1.50697 * 120.07278 * 180.22855 * 28 5 4 30 30 C 1.37980 * 119.85153 * 0.26207 * 28 5 4 31 31 H 1.09001 * 109.47475 * 270.01875 * 1 2 3 32 32 H 1.08997 * 109.47018 * 30.02732 * 1 2 3 33 33 H 1.09004 * 109.46822 * 150.01875 * 1 2 3 34 34 H 1.08005 * 119.92769 * 359.97197 * 3 2 1 35 35 H 1.08002 * 120.07867 * 180.27356 * 4 3 2 36 36 H 1.09000 * 109.64305 * 114.88717 * 9 8 6 37 37 H 1.09009 * 109.81319 * 354.36596 * 9 8 6 38 38 H 1.08999 * 109.41732 * 185.36370 * 10 9 8 39 39 H 1.09002 * 109.41587 * 65.57459 * 10 9 8 40 40 H 1.09002 * 109.47454 * 58.34577 * 14 13 11 41 41 H 1.08998 * 109.47608 * 178.35556 * 14 13 11 42 42 H 1.09000 * 109.60255 * 171.35292 * 15 14 13 43 43 H 1.09004 * 109.60022 * 291.82425 * 15 14 13 44 44 H 0.97001 * 120.00317 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.51980 * 245.58407 * 27 8 6 46 46 H 1.08996 * 109.52356 * 5.71219 * 27 8 6 47 47 H 1.09005 * 109.46525 * 91.88675 * 29 28 5 48 48 H 1.08998 * 109.47390 * 211.88053 * 29 28 5 49 49 H 1.08995 * 109.47415 * 331.88894 * 29 28 5 50 50 H 1.08000 * 119.92625 * 179.97438 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2073 0.0058 5 6 4.2762 0.0002 0.0014 6 6 5.7547 0.0003 0.0029 7 8 6.3617 -0.7443 0.7476 8 7 6.4293 0.8259 -0.8215 9 6 5.7166 1.6454 -1.8118 10 6 6.3135 1.3636 -3.1937 11 6 7.8212 1.5905 -3.1613 12 1 8.2336 1.3688 -4.1456 13 8 8.1183 2.9463 -2.8298 14 6 9.5109 3.2673 -2.8978 15 6 10.2823 2.4088 -1.8899 16 7 9.9195 0.9974 -2.0974 17 6 10.8796 0.0324 -2.2461 18 1 10.7512 -0.7483 -2.9814 19 6 12.0177 0.0572 -1.4519 20 7 13.1716 -0.3427 -1.9427 21 14 11.9117 0.6585 0.3135 22 1 11.4821 -0.4590 1.1922 23 1 13.2438 1.1478 0.7507 24 1 10.9248 1.7646 0.4013 25 6 8.4832 0.6607 -2.1396 26 1 8.3315 -0.3810 -2.4225 27 6 7.8921 0.9259 -0.7501 28 6 3.5754 -1.2067 0.0015 29 6 4.3240 -2.5146 0.0019 30 6 2.1957 -1.1997 0.0005 31 1 -0.3634 0.0003 1.0276 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5136 34 1 1.6522 2.1335 -0.0005 35 1 4.1115 2.1447 0.0103 36 1 5.8373 2.7011 -1.5689 37 1 4.6573 1.3881 -1.8108 38 1 5.8621 2.0322 -3.9267 39 1 6.1086 0.3301 -3.4731 40 1 9.8811 3.0678 -3.9035 41 1 9.6528 4.3217 -2.6608 42 1 11.3536 2.5375 -2.0442 43 1 10.0179 2.7090 -0.8760 44 1 13.9670 -0.3249 -1.3878 45 1 8.1731 1.9259 -0.4197 46 1 8.2737 0.1883 -0.0442 47 1 4.4749 -2.8464 1.0292 48 1 3.7473 -3.2635 -0.5408 49 1 5.2913 -2.3798 -0.4821 50 1 1.6521 -2.1330 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074397508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:46 Heat of formation + Delta-G solvation = -21.821977 kcal Electronic energy + Delta-G solvation = -31788.874112 eV Core-core repulsion = 27781.818449 eV Total energy + Delta-G solvation = -4007.055662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.70900 -39.45724 -38.21850 -35.91187 -34.75872 -33.59239 -32.61011 -31.82734 -31.57403 -29.89619 -28.09741 -27.44356 -27.07707 -24.91977 -23.85192 -23.01970 -22.59934 -21.56711 -21.22191 -19.61360 -18.55250 -17.35374 -16.98683 -16.29135 -15.84100 -15.62707 -15.41299 -15.21083 -15.09366 -14.59116 -14.46001 -14.20793 -14.08279 -13.77659 -13.52719 -13.34351 -13.29086 -13.15478 -12.70822 -12.68031 -12.52674 -12.46649 -12.17570 -12.15711 -11.83285 -11.69324 -11.60654 -11.42471 -11.15561 -10.99544 -10.88157 -10.65753 -10.50288 -10.24897 -9.90789 -9.63741 -9.56954 -9.22140 -8.92842 -8.74968 -8.40630 -8.32607 -6.81671 -6.17387 -3.50865 0.84750 1.18075 2.83964 3.15153 3.38079 3.47685 3.55125 3.60847 4.17037 4.46591 4.49559 4.56538 4.64594 4.68601 4.75167 5.03115 5.05101 5.08573 5.10868 5.21239 5.27951 5.32366 5.36940 5.45577 5.54425 5.56968 5.62774 5.68454 5.69000 5.73274 5.78607 5.86352 5.88252 5.91676 6.03131 6.07053 6.10284 6.14366 6.18234 6.25910 6.32019 6.39624 6.45786 6.60577 6.62350 6.73668 6.78907 6.82564 7.63903 7.68900 7.90776 8.27446 8.36728 8.84703 9.59143 10.06518 10.97641 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.003406 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.622203 B = 8219.186896 C = 9108.454075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 C -0.135 4.135 4 C -0.081 4.081 5 C -0.130 4.130 6 C 0.555 3.445 7 O -0.533 6.533 8 N -0.600 5.600 9 C 0.106 3.894 10 C -0.122 4.122 11 C 0.081 3.919 12 H 0.056 0.944 13 O -0.385 6.385 14 C 0.047 3.953 15 C 0.105 3.895 16 N -0.591 5.591 17 C -0.281 4.281 18 H 0.075 0.925 19 C 0.055 3.945 20 N -0.876 5.876 21 Si 0.844 3.156 22 H -0.283 1.283 23 H -0.296 1.296 24 H -0.259 1.259 25 C 0.131 3.869 26 H 0.083 0.917 27 C 0.101 3.899 28 C -0.029 4.029 29 C -0.117 4.117 30 C -0.129 4.129 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.035 0.965 44 H 0.266 0.734 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.839 4.481 -0.047 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.067 4.067 3 C -0.153 4.153 4 C -0.099 4.099 5 C -0.133 4.133 6 C 0.343 3.657 7 O -0.410 6.410 8 N -0.332 5.332 9 C -0.017 4.017 10 C -0.161 4.161 11 C 0.021 3.979 12 H 0.074 0.926 13 O -0.304 6.304 14 C -0.031 4.031 15 C -0.020 4.020 16 N -0.314 5.314 17 C -0.409 4.409 18 H 0.093 0.907 19 C -0.148 4.148 20 N -0.513 5.513 21 Si 0.671 3.329 22 H -0.210 1.210 23 H -0.222 1.222 24 H -0.184 1.184 25 C 0.024 3.976 26 H 0.101 0.899 27 C -0.023 4.023 28 C -0.029 4.029 29 C -0.174 4.174 30 C -0.147 4.147 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.377 4.160 0.393 23.747 hybrid contribution 0.434 0.208 1.066 1.170 sum -22.942 4.368 1.460 23.400 Atomic orbital electron populations 1.20832 0.91031 1.02931 1.02474 1.20055 0.96148 0.93090 0.97421 1.20924 0.93727 0.97701 1.02943 1.21330 0.94310 0.97137 0.97141 1.19862 0.93188 0.93983 1.06265 1.18346 0.86794 0.79994 0.80576 1.90793 1.69631 1.39695 1.40926 1.48156 1.08114 1.41766 1.35206 1.21885 0.96287 0.95630 0.87852 1.21799 0.94696 1.02432 0.97178 1.22225 0.93956 0.83424 0.98263 0.92552 1.87729 1.24829 1.27172 1.90666 1.23117 0.81529 0.98669 0.99764 1.22014 0.99082 0.84744 0.96154 1.44464 0.99706 1.02346 1.84876 1.18576 0.97202 1.09040 1.16079 0.90705 1.25583 0.95236 0.96461 0.97563 1.70050 0.98379 1.47289 1.35618 0.87412 0.77043 0.79773 0.88701 1.21006 1.22229 1.18391 1.21769 0.85757 0.97993 0.92108 0.89893 1.22347 0.76621 1.02541 1.00764 1.19944 0.93401 0.94607 0.94995 1.20872 1.00319 0.92965 1.03227 1.20854 0.93044 0.97811 1.03037 0.90978 0.91353 0.91401 0.85610 0.85249 0.90665 0.89542 0.90264 0.90306 0.93258 0.89860 0.90526 0.94744 0.92470 0.91484 0.89298 0.90285 0.91706 0.90681 0.85589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.07 -0.60 5.89 -104.53 -0.62 -1.21 16 3 C -0.13 -1.24 9.68 -39.64 -0.38 -1.62 16 4 C -0.08 -0.89 7.45 -39.19 -0.29 -1.18 16 5 C -0.13 -1.77 4.97 -104.97 -0.52 -2.29 16 6 C 0.55 9.42 6.46 -12.33 -0.08 9.34 16 7 O -0.53 -11.03 14.76 5.32 0.08 -10.95 16 8 N -0.60 -9.75 2.96 -173.89 -0.51 -10.27 16 9 C 0.11 1.36 4.95 -3.70 -0.02 1.34 16 10 C -0.12 -1.59 5.82 -26.91 -0.16 -1.74 16 11 C 0.08 1.35 2.72 -26.89 -0.07 1.27 16 12 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 13 O -0.38 -6.58 9.59 -35.23 -0.34 -6.92 16 14 C 0.05 0.82 6.97 37.28 0.26 1.08 16 15 C 0.11 2.21 4.27 -3.55 -0.02 2.20 16 16 N -0.59 -13.68 2.18 -163.86 -0.36 -14.03 16 17 C -0.28 -7.68 9.80 -15.06 -0.15 -7.83 16 18 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 19 C 0.06 1.56 4.88 -17.43 -0.09 1.48 16 20 N -0.88 -25.98 13.97 55.49 0.78 -25.20 16 21 Si 0.84 21.52 27.44 -169.99 -4.67 16.86 16 22 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 23 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.26 -6.29 5.12 56.52 0.29 -6.00 16 25 C 0.13 2.62 3.00 -67.07 -0.20 2.42 16 26 H 0.08 1.74 8.03 -51.93 -0.42 1.32 16 27 C 0.10 1.97 5.63 -3.72 -0.02 1.95 16 28 C -0.03 -0.36 5.91 -104.23 -0.62 -0.97 16 29 C -0.12 -1.46 9.02 36.00 0.32 -1.13 16 30 C -0.13 -1.30 9.34 -39.64 -0.37 -1.67 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 35 H 0.13 1.31 7.05 -52.49 -0.37 0.94 16 36 H 0.08 0.95 7.95 -51.93 -0.41 0.53 16 37 H 0.09 0.94 4.95 -51.92 -0.26 0.68 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.70 7.20 -51.93 -0.37 1.33 16 43 H 0.03 0.74 5.56 -51.93 -0.29 0.45 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.07 1.35 6.56 -51.93 -0.34 1.01 16 46 H 0.09 2.02 6.99 -51.93 -0.36 1.65 16 47 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 49 H 0.07 1.11 6.50 -51.93 -0.34 0.77 16 50 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -32.11 381.51 -9.82 -41.93 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.90 Total: 1.76 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.65 Total: 1.08 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.10 Total: -49.51 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.26 Total: -17.87 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.11 -9.82 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074397508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.104 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds