Wall clock time and date at job start Wed Apr 1 2020 02:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38381 * 119.85126 * 2 1 4 4 C 1.37929 * 120.14768 * 179.72136 * 3 2 1 5 5 C 1.39603 * 119.84938 * 0.48824 * 4 3 2 6 6 C 1.47845 * 120.14291 * 179.79068 * 5 4 3 7 7 O 1.21554 * 119.99873 * 134.77360 * 6 5 4 8 8 N 1.34775 * 120.00108 * 314.77599 * 6 5 4 9 9 C 1.46983 * 120.72553 * 354.51847 * 8 6 5 10 10 C 1.53152 * 108.44144 * 234.57778 * 9 8 6 11 11 C 1.52499 * 109.80344 * 305.47058 * 10 9 8 12 12 H 1.08997 * 108.94022 * 178.98329 * 11 10 9 13 13 O 1.42700 * 110.61987 * 298.68511 * 11 10 9 14 14 C 1.43075 * 113.87545 * 185.34659 * 13 11 10 15 15 C 1.53228 * 109.45034 * 298.35054 * 14 13 11 16 16 N 1.47189 * 108.69233 * 51.58457 * 15 14 13 17 17 C 1.36931 * 121.21821 * 129.04038 * 16 15 14 18 18 H 1.08009 * 120.00134 * 220.98420 * 17 16 15 19 19 C 1.38808 * 120.00584 * 40.98348 * 17 16 15 20 20 N 1.31618 * 120.00464 * 214.34074 * 19 17 16 21 21 Si 1.86802 * 119.99731 * 34.33421 * 19 17 16 22 22 H 1.48506 * 109.47220 * 84.46095 * 21 19 17 23 23 H 1.48496 * 109.47237 * 204.45886 * 21 19 17 24 24 H 1.48496 * 109.47204 * 324.46105 * 21 19 17 25 25 C 1.47590 * 117.55707 * 309.05891 * 16 15 14 26 26 H 1.08999 * 111.15840 * 172.78003 * 25 16 15 27 27 C 1.46795 * 120.72064 * 174.54131 * 8 6 5 28 28 C 1.39556 * 119.71030 * 359.50895 * 5 4 3 29 29 C 1.50697 * 120.07278 * 180.22855 * 28 5 4 30 30 C 1.37980 * 119.85153 * 0.26207 * 28 5 4 31 31 H 1.09001 * 109.47475 * 270.01875 * 1 2 3 32 32 H 1.08997 * 109.47018 * 30.02732 * 1 2 3 33 33 H 1.09004 * 109.46822 * 150.01875 * 1 2 3 34 34 H 1.08005 * 119.92769 * 359.97197 * 3 2 1 35 35 H 1.08002 * 120.07867 * 180.27356 * 4 3 2 36 36 H 1.09000 * 109.64305 * 114.88717 * 9 8 6 37 37 H 1.09009 * 109.81319 * 354.36596 * 9 8 6 38 38 H 1.08999 * 109.41732 * 185.36370 * 10 9 8 39 39 H 1.09002 * 109.41587 * 65.57459 * 10 9 8 40 40 H 1.09002 * 109.47454 * 58.34577 * 14 13 11 41 41 H 1.08998 * 109.47608 * 178.35556 * 14 13 11 42 42 H 1.09000 * 109.60255 * 171.35292 * 15 14 13 43 43 H 1.09004 * 109.60022 * 291.82425 * 15 14 13 44 44 H 0.97001 * 120.00317 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.51980 * 245.58407 * 27 8 6 46 46 H 1.08996 * 109.52356 * 5.71219 * 27 8 6 47 47 H 1.09005 * 109.46525 * 91.88675 * 29 28 5 48 48 H 1.08998 * 109.47390 * 211.88053 * 29 28 5 49 49 H 1.08995 * 109.47415 * 331.88894 * 29 28 5 50 50 H 1.08000 * 119.92625 * 179.97438 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2073 0.0058 5 6 4.2762 0.0002 0.0014 6 6 5.7547 0.0003 0.0029 7 8 6.3617 -0.7443 0.7476 8 7 6.4293 0.8259 -0.8215 9 6 5.7166 1.6454 -1.8118 10 6 6.3135 1.3636 -3.1937 11 6 7.8212 1.5905 -3.1613 12 1 8.2336 1.3688 -4.1456 13 8 8.1183 2.9463 -2.8298 14 6 9.5109 3.2673 -2.8978 15 6 10.2823 2.4088 -1.8899 16 7 9.9195 0.9974 -2.0974 17 6 10.8796 0.0324 -2.2461 18 1 10.7512 -0.7483 -2.9814 19 6 12.0177 0.0572 -1.4519 20 7 13.1716 -0.3427 -1.9427 21 14 11.9117 0.6585 0.3135 22 1 11.4821 -0.4590 1.1922 23 1 13.2438 1.1478 0.7507 24 1 10.9248 1.7646 0.4013 25 6 8.4832 0.6607 -2.1396 26 1 8.3315 -0.3810 -2.4225 27 6 7.8921 0.9259 -0.7501 28 6 3.5754 -1.2067 0.0015 29 6 4.3240 -2.5146 0.0019 30 6 2.1957 -1.1997 0.0005 31 1 -0.3634 0.0003 1.0276 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5136 34 1 1.6522 2.1335 -0.0005 35 1 4.1115 2.1447 0.0103 36 1 5.8373 2.7011 -1.5689 37 1 4.6573 1.3881 -1.8108 38 1 5.8621 2.0322 -3.9267 39 1 6.1086 0.3301 -3.4731 40 1 9.8811 3.0678 -3.9035 41 1 9.6528 4.3217 -2.6608 42 1 11.3536 2.5375 -2.0442 43 1 10.0179 2.7090 -0.8760 44 1 13.9670 -0.3249 -1.3878 45 1 8.1731 1.9259 -0.4197 46 1 8.2737 0.1883 -0.0442 47 1 4.4749 -2.8464 1.0292 48 1 3.7473 -3.2635 -0.5408 49 1 5.2913 -2.3798 -0.4821 50 1 1.6521 -2.1330 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074397508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:45 Heat of formation + Delta-G solvation = -41.317902 kcal Electronic energy + Delta-G solvation = -31789.719518 eV Core-core repulsion = 27781.818449 eV Total energy + Delta-G solvation = -4007.901069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.91672 -40.69368 -39.39261 -37.27806 -36.51864 -34.42460 -33.95405 -33.55052 -32.75763 -31.28950 -29.57612 -28.38271 -28.12388 -26.14474 -25.57031 -24.60670 -23.50577 -22.84415 -22.35575 -20.84967 -19.90342 -19.04673 -18.44694 -17.49939 -17.27943 -17.06481 -16.91739 -16.43735 -16.22790 -15.98206 -15.81342 -15.52980 -15.21709 -14.91386 -14.75763 -14.56180 -14.53059 -14.16116 -14.06337 -14.01333 -13.92406 -13.77749 -13.39094 -13.33981 -12.94741 -12.85581 -12.78184 -12.68785 -12.50623 -12.41499 -12.33064 -12.05113 -11.97537 -11.90411 -11.60375 -11.23960 -10.94076 -10.91298 -10.42797 -9.83349 -9.72365 -9.51028 -8.71866 -8.39414 -5.68383 -0.02596 0.39650 1.25653 1.36644 1.43190 1.63570 1.90765 2.33425 2.73392 2.76483 2.88412 3.21068 3.42688 3.76214 3.80740 3.89245 3.95731 3.98687 4.04400 4.11275 4.18508 4.34250 4.35093 4.36683 4.43335 4.43769 4.54664 4.61653 4.67738 4.70932 4.72608 4.76496 4.78302 4.82013 4.87454 4.91943 4.93670 5.00088 5.02357 5.14587 5.19683 5.22263 5.30273 5.34712 5.42311 5.53720 5.62749 5.79942 5.99264 6.07936 6.25517 6.37618 6.82589 7.06528 7.46020 7.98327 8.80309 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.003406 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.622203 B = 8219.186896 C = 9108.454075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C -0.081 4.081 5 C -0.155 4.155 6 C 0.551 3.449 7 O -0.585 6.585 8 N -0.599 5.599 9 C 0.107 3.893 10 C -0.116 4.116 11 C 0.088 3.912 12 H 0.050 0.950 13 O -0.376 6.376 14 C 0.056 3.944 15 C 0.102 3.898 16 N -0.604 5.604 17 C -0.272 4.272 18 H 0.040 0.960 19 C 0.012 3.988 20 N -0.918 5.918 21 Si 0.898 3.102 22 H -0.302 1.302 23 H -0.290 1.290 24 H -0.241 1.241 25 C 0.129 3.871 26 H 0.061 0.939 27 C 0.116 3.884 28 C -0.046 4.046 29 C -0.113 4.113 30 C -0.130 4.130 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.139 0.861 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.121 0.879 42 H 0.060 0.940 43 H 0.033 0.967 44 H 0.267 0.733 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.040 0.960 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.569 7.200 -0.449 29.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.099 4.099 5 C -0.158 4.158 6 C 0.342 3.658 7 O -0.466 6.466 8 N -0.331 5.331 9 C -0.014 4.014 10 C -0.154 4.154 11 C 0.029 3.971 12 H 0.068 0.932 13 O -0.295 6.295 14 C -0.021 4.021 15 C -0.023 4.023 16 N -0.328 5.328 17 C -0.401 4.401 18 H 0.057 0.943 19 C -0.188 4.188 20 N -0.559 5.559 21 Si 0.725 3.275 22 H -0.230 1.230 23 H -0.217 1.217 24 H -0.165 1.165 25 C 0.022 3.978 26 H 0.079 0.921 27 C -0.009 4.009 28 C -0.047 4.047 29 C -0.170 4.170 30 C -0.148 4.148 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.176 0.824 35 H 0.157 0.843 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.139 0.861 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.059 0.941 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -28.161 6.930 -0.029 29.002 hybrid contribution 1.779 -0.700 1.149 2.230 sum -26.383 6.230 1.120 27.132 Atomic orbital electron populations 1.20916 0.88487 1.04319 1.03464 1.20489 0.97941 0.92470 0.95024 1.21295 0.92862 0.99207 1.01266 1.21454 0.95292 0.96275 0.96926 1.19665 0.90650 0.95770 1.09702 1.19014 0.88474 0.78825 0.79522 1.90756 1.71059 1.41772 1.43025 1.48183 1.06638 1.42245 1.35998 1.22153 0.97254 0.95568 0.86449 1.21837 0.91625 1.03677 0.98290 1.22179 0.96320 0.82419 0.96176 0.93236 1.87751 1.24438 1.26826 1.90464 1.23064 0.81038 0.99749 0.98289 1.22078 0.98946 0.83916 0.97371 1.44547 1.00431 1.02742 1.85128 1.18446 0.98073 1.08922 1.14691 0.94250 1.26000 0.95007 0.97673 1.00124 1.70113 0.99025 1.50032 1.36694 0.86533 0.77415 0.79207 0.84328 1.23048 1.21675 1.16517 1.21827 0.84306 0.98032 0.93645 0.92121 1.21841 0.79175 1.00750 0.99110 1.20034 0.94628 0.93823 0.96185 1.20797 0.99217 0.94447 1.02533 1.21103 0.91845 0.99533 1.02311 0.89999 0.89740 0.90380 0.82444 0.84299 0.89449 0.86882 0.86688 0.89955 0.93348 0.86095 0.92181 0.94919 0.92369 0.91753 0.93486 0.91396 0.89097 0.94065 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.01 71.24 0.71 -0.09 16 2 C -0.06 -0.80 5.89 -19.81 -0.12 -0.92 16 3 C -0.13 -1.78 9.68 22.23 0.22 -1.57 16 4 C -0.08 -1.55 7.45 22.53 0.17 -1.38 16 5 C -0.15 -4.08 4.97 -20.09 -0.10 -4.18 16 6 C 0.55 19.24 6.46 86.79 0.56 19.80 16 7 O -0.58 -25.94 14.76 -3.89 -0.06 -25.99 16 8 N -0.60 -19.47 2.96 -822.35 -2.43 -21.90 16 9 C 0.11 2.44 4.95 86.34 0.43 2.86 16 10 C -0.12 -2.68 5.82 30.48 0.18 -2.50 16 11 C 0.09 2.83 2.72 30.49 0.08 2.92 16 12 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 13 O -0.38 -11.81 9.59 -148.98 -1.43 -13.24 16 14 C 0.06 1.83 6.97 72.06 0.50 2.33 16 15 C 0.10 4.23 4.27 86.32 0.37 4.60 16 16 N -0.60 -28.85 2.18 -672.33 -1.46 -30.32 16 17 C -0.27 -15.64 9.80 84.03 0.82 -14.82 16 18 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 19 C 0.01 0.73 4.88 84.86 0.41 1.15 16 20 N -0.92 -56.80 13.97 21.65 0.30 -56.50 16 21 Si 0.90 46.41 27.44 68.60 1.88 48.29 16 22 H -0.30 -16.48 7.11 99.48 0.71 -15.78 16 23 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 24 H -0.24 -11.60 5.12 99.48 0.51 -11.09 16 25 C 0.13 5.29 3.00 44.95 0.13 5.43 16 26 H 0.06 2.72 8.03 -2.39 -0.02 2.70 16 27 C 0.12 4.68 5.63 86.43 0.49 5.17 16 28 C -0.05 -1.10 5.91 -19.61 -0.12 -1.22 16 29 C -0.11 -2.91 9.02 71.23 0.64 -2.27 16 30 C -0.13 -2.22 9.34 22.23 0.21 -2.02 16 31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.37 8.08 -2.39 -0.02 0.35 16 33 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 34 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.14 2.33 7.05 -2.91 -0.02 2.31 16 36 H 0.09 1.85 7.95 -2.39 -0.02 1.83 16 37 H 0.11 2.05 4.95 -2.38 -0.01 2.04 16 38 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.06 2.69 7.20 -2.39 -0.02 2.67 16 43 H 0.03 1.38 5.56 -2.38 -0.01 1.37 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.06 2.61 6.56 -2.39 -0.02 2.59 16 46 H 0.05 2.28 6.99 -2.39 -0.02 2.26 16 47 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.09 1.73 8.10 -2.39 -0.02 1.71 16 49 H 0.04 1.31 6.50 -2.39 -0.02 1.30 16 50 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -76.07 381.51 3.13 -72.94 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.74 Total: 13.42 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 5.59 Total: 13.30 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -3.60 Total: -108.72 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.49 Total: -39.24 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.29 kcal Total: -76.07 3.13 -72.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074397508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.621 kcal (2) G-P(sol) polarization free energy of solvation -76.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds