Wall clock time and date at job start Wed Apr 1 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38378 * 119.85278 * 2 1 4 4 C 1.37947 * 120.14282 * 179.97438 * 3 2 1 5 5 C 1.39589 * 119.85049 * 359.97438 * 4 3 2 6 6 C 1.47846 * 120.14190 * 180.02562 * 5 4 3 7 7 O 1.21555 * 120.00151 * 133.95992 * 6 5 4 8 8 N 1.34777 * 120.00253 * 313.96379 * 6 5 4 9 9 C 1.46979 * 120.71625 * 4.31429 * 8 6 5 10 10 C 1.53159 * 108.44986 * 234.51001 * 9 8 6 11 11 C 1.52513 * 109.78873 * 305.47858 * 10 9 8 12 12 H 1.08998 * 108.93189 * 179.02284 * 11 10 9 13 13 O 1.42694 * 110.62087 * 298.73003 * 11 10 9 14 14 C 1.43074 * 113.86579 * 185.35694 * 13 11 10 15 15 C 1.53226 * 109.44968 * 298.35469 * 14 13 11 16 16 N 1.47174 * 108.70367 * 51.57187 * 15 14 13 17 17 C 1.36936 * 121.22609 * 129.03528 * 16 15 14 18 18 H 1.08000 * 120.00287 * 206.72246 * 17 16 15 19 19 C 1.38813 * 120.00131 * 26.73187 * 17 16 15 20 20 N 1.31620 * 119.99647 * 14.67509 * 19 17 16 21 21 Si 1.86799 * 120.00182 * 194.67729 * 19 17 16 22 22 H 1.48501 * 109.46993 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47154 * 120.00102 * 21 19 17 24 24 H 1.48502 * 109.47033 * 239.99778 * 21 19 17 25 25 C 1.47593 * 117.54935 * 309.06453 * 16 15 14 26 26 H 1.08999 * 110.31857 * 172.30894 * 25 16 15 27 27 C 1.46789 * 120.71901 * 184.04205 * 8 6 5 28 28 C 1.39558 * 119.71769 * 0.02562 * 5 4 3 29 29 C 1.37976 * 119.84980 * 0.28221 * 28 5 4 30 30 C 1.50704 * 119.92764 * 179.71982 * 29 28 5 31 31 H 1.09000 * 109.47017 * 90.00441 * 1 2 3 32 32 H 1.08998 * 109.47528 * 210.00055 * 1 2 3 33 33 H 1.08993 * 109.47498 * 330.00396 * 1 2 3 34 34 H 1.07996 * 119.93140 * 359.97438 * 3 2 1 35 35 H 1.07999 * 120.07002 * 180.02562 * 4 3 2 36 36 H 1.09002 * 109.63928 * 354.19497 * 9 8 6 37 37 H 1.08994 * 109.64270 * 114.81739 * 9 8 6 38 38 H 1.08997 * 109.42044 * 65.57669 * 10 9 8 39 39 H 1.09001 * 109.41908 * 185.37793 * 10 9 8 40 40 H 1.09003 * 109.47536 * 58.34669 * 14 13 11 41 41 H 1.08994 * 109.47821 * 178.36204 * 14 13 11 42 42 H 1.08999 * 109.60065 * 171.33589 * 15 14 13 43 43 H 1.09000 * 109.60221 * 291.65302 * 15 14 13 44 44 H 0.97002 * 120.00156 * 179.97438 * 20 19 17 45 45 H 1.09003 * 109.51555 * 245.64164 * 27 8 6 46 46 H 1.08998 * 109.52363 * 5.82465 * 27 8 6 47 47 H 1.07996 * 120.07827 * 179.97438 * 28 5 4 48 48 H 1.08995 * 109.46730 * 90.00065 * 30 29 28 49 49 H 1.08999 * 109.46883 * 209.99490 * 30 29 28 50 50 H 1.08990 * 109.46968 * 329.99843 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2761 0.0000 0.0016 6 6 5.7546 -0.0001 0.0028 7 8 6.3618 -0.7305 0.7613 8 7 6.4292 0.8098 -0.8372 9 6 5.7141 1.7666 -1.6936 10 6 6.1368 1.5269 -3.1461 11 6 7.6560 1.5975 -3.2601 12 1 7.9421 1.4080 -4.2947 13 8 8.1291 2.8883 -2.8779 14 6 9.5346 3.0711 -3.0738 15 6 10.3050 2.0673 -2.2097 16 7 9.7730 0.7190 -2.4648 17 6 10.6033 -0.3247 -2.7752 18 1 10.2334 -1.1534 -3.3608 19 6 11.9204 -0.3179 -2.3369 20 7 12.2969 0.5234 -1.3973 21 14 13.1584 -1.5027 -3.0805 22 1 12.4881 -2.3378 -4.1094 23 1 14.2633 -0.7345 -3.7086 24 1 13.7080 -2.3781 -2.0143 25 6 8.3116 0.5334 -2.3745 26 1 8.0351 -0.4646 -2.7146 27 6 7.8943 0.7595 -0.9121 28 6 3.5753 -1.2069 0.0016 29 6 2.1956 -1.1999 -0.0054 30 6 1.4371 -2.5021 -0.0118 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8899 0.5137 34 1 1.6523 2.1334 -0.0004 35 1 4.1116 2.1445 0.0010 36 1 4.6393 1.6144 -1.5950 37 1 5.9714 2.7843 -1.4003 38 1 5.7948 0.5424 -3.4653 39 1 5.6896 2.2892 -3.7842 40 1 9.7792 2.9097 -4.1237 41 1 9.8126 4.0854 -2.7877 42 1 11.3632 2.0979 -2.4692 43 1 10.1793 2.3192 -1.1567 44 1 13.2172 0.5280 -1.0908 45 1 8.3098 1.7013 -0.5534 46 1 8.2627 -0.0604 -0.2956 47 1 4.1117 -2.1442 0.0020 48 1 1.2491 -2.8180 1.0143 49 1 0.4878 -2.3671 -0.5301 50 1 2.0259 -3.2629 -0.5241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074398360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:01 Heat of formation + Delta-G solvation = -21.422169 kcal Electronic energy + Delta-G solvation = -31357.921166 eV Core-core repulsion = 27350.882840 eV Total energy + Delta-G solvation = -4007.038325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.58416 -39.37446 -38.23200 -35.76954 -34.65060 -33.69775 -32.32768 -31.65048 -31.47435 -29.52661 -28.13934 -27.56880 -26.64414 -24.90781 -23.85327 -22.86440 -22.24265 -21.92923 -21.15860 -19.46807 -18.36928 -17.09899 -16.81013 -16.30353 -15.85308 -15.54670 -15.28063 -15.18811 -14.95586 -14.51813 -14.40452 -14.34478 -14.00645 -13.56662 -13.49302 -13.29655 -13.12724 -13.08309 -12.71880 -12.70636 -12.37260 -12.30520 -12.27311 -11.96545 -11.78395 -11.57827 -11.30277 -11.12129 -11.05920 -10.92059 -10.76990 -10.58388 -10.22306 -10.18082 -10.01219 -9.64293 -9.53936 -8.99803 -8.95392 -8.66344 -8.58747 -8.21918 -6.75679 -5.86158 -3.31513 0.89056 1.20392 2.89644 3.23379 3.33973 3.41517 3.43545 3.64710 4.32055 4.40779 4.51444 4.58616 4.63678 4.77335 4.99352 5.01071 5.09088 5.17599 5.26322 5.29101 5.30039 5.36606 5.39148 5.46275 5.49788 5.54078 5.61922 5.65601 5.76915 5.80534 5.88515 5.92291 6.00395 6.05459 6.09717 6.16715 6.17912 6.27104 6.31688 6.36101 6.40754 6.44315 6.67292 6.73826 6.77746 6.96582 7.09620 7.49901 7.70215 7.74425 7.89180 8.30107 8.44716 9.08596 9.69595 10.27041 11.21153 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.002941 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.795410 B = 9518.811879 C =10416.191301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.074 4.074 3 C -0.123 4.123 4 C -0.095 4.095 5 C -0.118 4.118 6 C 0.552 3.448 7 O -0.538 6.538 8 N -0.597 5.597 9 C 0.098 3.902 10 C -0.122 4.122 11 C 0.081 3.919 12 H 0.051 0.949 13 O -0.387 6.387 14 C 0.039 3.961 15 C 0.137 3.863 16 N -0.585 5.585 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.005 3.995 20 N -0.901 5.901 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.134 3.866 26 H 0.075 0.925 27 C 0.107 3.893 28 C -0.067 4.067 29 C -0.093 4.093 30 C -0.115 4.115 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.028 0.972 44 H 0.255 0.745 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.130 0.870 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.673 2.968 -0.902 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.074 4.074 3 C -0.141 4.141 4 C -0.113 4.113 5 C -0.121 4.121 6 C 0.340 3.660 7 O -0.415 6.415 8 N -0.330 5.330 9 C -0.024 4.024 10 C -0.161 4.161 11 C 0.021 3.979 12 H 0.069 0.931 13 O -0.307 6.307 14 C -0.039 4.039 15 C 0.011 3.989 16 N -0.307 5.307 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.194 4.194 20 N -0.545 5.545 21 Si 0.736 3.264 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.026 3.974 26 H 0.093 0.907 27 C -0.017 4.017 28 C -0.086 4.086 29 C -0.093 4.093 30 C -0.172 4.172 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.047 0.953 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.148 0.852 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.220 2.719 -0.370 22.389 hybrid contribution 1.129 -0.617 -0.398 1.347 sum -21.091 2.101 -0.768 21.209 Atomic orbital electron populations 1.20854 0.91153 1.02937 1.02427 1.19909 0.96058 0.92601 0.98811 1.20940 0.93733 0.97632 1.01817 1.21367 0.94331 0.97307 0.98317 1.19969 0.93361 0.94405 1.04367 1.18375 0.86783 0.80221 0.80668 1.90795 1.69610 1.41422 1.39707 1.48211 1.08291 1.37141 1.39344 1.22093 0.97104 0.93211 0.90018 1.21796 0.95017 1.02507 0.96759 1.22221 0.92605 0.85138 0.97942 0.93053 1.87712 1.24091 1.31940 1.86922 1.23336 0.81021 0.99895 0.99607 1.21488 0.99003 0.82669 0.95721 1.44311 0.99368 1.05725 1.81287 1.19220 0.91885 1.00475 1.26708 0.91306 1.25090 0.98963 0.98778 0.96602 1.70006 1.17218 1.39207 1.28077 0.86152 0.81248 0.80366 0.78584 1.20209 1.21493 1.21565 1.21707 0.86491 0.96948 0.92296 0.90726 1.22438 0.76076 1.03258 0.99900 1.21044 0.93168 0.97388 0.96953 1.19698 0.93258 0.95156 1.01214 1.20821 0.99912 0.93964 1.02463 0.90974 0.91212 0.91445 0.85522 0.84982 0.89048 0.90539 0.90513 0.90451 0.94131 0.90149 0.88424 0.95350 0.93471 0.91180 0.89265 0.85250 0.91061 0.91256 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.17 36.00 0.33 -0.40 16 2 C -0.07 -0.68 5.89 -104.53 -0.62 -1.30 16 3 C -0.12 -1.16 9.68 -39.64 -0.38 -1.54 16 4 C -0.09 -1.07 7.32 -39.18 -0.29 -1.36 16 5 C -0.12 -1.66 5.19 -104.97 -0.55 -2.21 16 6 C 0.55 9.87 7.29 -12.33 -0.09 9.78 16 7 O -0.54 -11.84 16.43 5.32 0.09 -11.75 16 8 N -0.60 -10.27 2.96 -173.63 -0.51 -10.78 16 9 C 0.10 1.33 5.08 -3.70 -0.02 1.31 16 10 C -0.12 -1.67 5.82 -26.90 -0.16 -1.83 16 11 C 0.08 1.42 2.72 -26.88 -0.07 1.35 16 12 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 13 O -0.39 -7.18 9.58 -35.23 -0.34 -7.52 16 14 C 0.04 0.75 6.97 37.27 0.26 1.01 16 15 C 0.14 3.19 4.91 -3.56 -0.02 3.17 16 16 N -0.58 -14.35 2.71 -163.62 -0.44 -14.79 16 17 C -0.25 -6.86 9.70 -15.06 -0.15 -7.00 16 18 H 0.07 1.84 7.87 -52.49 -0.41 1.43 16 19 C 0.00 0.13 5.01 -17.43 -0.09 0.04 16 20 N -0.90 -25.72 11.04 55.49 0.61 -25.10 16 21 Si 0.91 21.58 29.58 -169.99 -5.03 16.55 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.13 2.81 3.04 -66.85 -0.20 2.61 16 26 H 0.07 1.61 7.99 -51.93 -0.42 1.20 16 27 C 0.11 2.22 5.63 -3.50 -0.02 2.20 16 28 C -0.07 -0.86 9.35 -39.19 -0.37 -1.23 16 29 C -0.09 -0.96 5.87 -104.68 -0.61 -1.58 16 30 C -0.12 -0.88 9.17 36.01 0.33 -0.55 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.38 6.70 -51.93 -0.35 0.04 16 33 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.36 6.58 -52.49 -0.35 1.01 16 36 H 0.09 1.03 4.19 -51.93 -0.22 0.81 16 37 H 0.08 1.04 7.94 -51.93 -0.41 0.63 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.10 2.52 6.09 -51.93 -0.32 2.20 16 43 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.07 1.55 6.58 -51.93 -0.34 1.21 16 46 H 0.09 2.16 7.02 -51.93 -0.36 1.80 16 47 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.42 6.71 -51.93 -0.35 0.07 16 50 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -31.91 383.87 -10.22 -42.13 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.67 Total: 3.00 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -2.70 Total: 2.48 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.34 Total: -50.68 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.25 Total: -19.27 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.91 -10.22 -42.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074398360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.705 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds