Wall clock time and date at job start Wed Apr 1 2020 02:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38378 * 119.85278 * 2 1 4 4 C 1.37947 * 120.14282 * 179.97438 * 3 2 1 5 5 C 1.39589 * 119.85049 * 359.97438 * 4 3 2 6 6 C 1.47846 * 120.14190 * 180.02562 * 5 4 3 7 7 O 1.21555 * 120.00151 * 133.95992 * 6 5 4 8 8 N 1.34777 * 120.00253 * 313.96379 * 6 5 4 9 9 C 1.46979 * 120.71625 * 4.31429 * 8 6 5 10 10 C 1.53159 * 108.44986 * 234.51001 * 9 8 6 11 11 C 1.52513 * 109.78873 * 305.47858 * 10 9 8 12 12 H 1.08998 * 108.93189 * 179.02284 * 11 10 9 13 13 O 1.42694 * 110.62087 * 298.73003 * 11 10 9 14 14 C 1.43074 * 113.86579 * 185.35694 * 13 11 10 15 15 C 1.53226 * 109.44968 * 298.35469 * 14 13 11 16 16 N 1.47174 * 108.70367 * 51.57187 * 15 14 13 17 17 C 1.36936 * 121.22609 * 129.03528 * 16 15 14 18 18 H 1.08000 * 120.00287 * 206.72246 * 17 16 15 19 19 C 1.38813 * 120.00131 * 26.73187 * 17 16 15 20 20 N 1.31620 * 119.99647 * 14.67509 * 19 17 16 21 21 Si 1.86799 * 120.00182 * 194.67729 * 19 17 16 22 22 H 1.48501 * 109.46993 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47154 * 120.00102 * 21 19 17 24 24 H 1.48502 * 109.47033 * 239.99778 * 21 19 17 25 25 C 1.47593 * 117.54935 * 309.06453 * 16 15 14 26 26 H 1.08999 * 110.31857 * 172.30894 * 25 16 15 27 27 C 1.46789 * 120.71901 * 184.04205 * 8 6 5 28 28 C 1.39558 * 119.71769 * 0.02562 * 5 4 3 29 29 C 1.37976 * 119.84980 * 0.28221 * 28 5 4 30 30 C 1.50704 * 119.92764 * 179.71982 * 29 28 5 31 31 H 1.09000 * 109.47017 * 90.00441 * 1 2 3 32 32 H 1.08998 * 109.47528 * 210.00055 * 1 2 3 33 33 H 1.08993 * 109.47498 * 330.00396 * 1 2 3 34 34 H 1.07996 * 119.93140 * 359.97438 * 3 2 1 35 35 H 1.07999 * 120.07002 * 180.02562 * 4 3 2 36 36 H 1.09002 * 109.63928 * 354.19497 * 9 8 6 37 37 H 1.08994 * 109.64270 * 114.81739 * 9 8 6 38 38 H 1.08997 * 109.42044 * 65.57669 * 10 9 8 39 39 H 1.09001 * 109.41908 * 185.37793 * 10 9 8 40 40 H 1.09003 * 109.47536 * 58.34669 * 14 13 11 41 41 H 1.08994 * 109.47821 * 178.36204 * 14 13 11 42 42 H 1.08999 * 109.60065 * 171.33589 * 15 14 13 43 43 H 1.09000 * 109.60221 * 291.65302 * 15 14 13 44 44 H 0.97002 * 120.00156 * 179.97438 * 20 19 17 45 45 H 1.09003 * 109.51555 * 245.64164 * 27 8 6 46 46 H 1.08998 * 109.52363 * 5.82465 * 27 8 6 47 47 H 1.07996 * 120.07827 * 179.97438 * 28 5 4 48 48 H 1.08995 * 109.46730 * 90.00065 * 30 29 28 49 49 H 1.08999 * 109.46883 * 209.99490 * 30 29 28 50 50 H 1.08990 * 109.46968 * 329.99843 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2761 0.0000 0.0016 6 6 5.7546 -0.0001 0.0028 7 8 6.3618 -0.7305 0.7613 8 7 6.4292 0.8098 -0.8372 9 6 5.7141 1.7666 -1.6936 10 6 6.1368 1.5269 -3.1461 11 6 7.6560 1.5975 -3.2601 12 1 7.9421 1.4080 -4.2947 13 8 8.1291 2.8883 -2.8779 14 6 9.5346 3.0711 -3.0738 15 6 10.3050 2.0673 -2.2097 16 7 9.7730 0.7190 -2.4648 17 6 10.6033 -0.3247 -2.7752 18 1 10.2334 -1.1534 -3.3608 19 6 11.9204 -0.3179 -2.3369 20 7 12.2969 0.5234 -1.3973 21 14 13.1584 -1.5027 -3.0805 22 1 12.4881 -2.3378 -4.1094 23 1 14.2633 -0.7345 -3.7086 24 1 13.7080 -2.3781 -2.0143 25 6 8.3116 0.5334 -2.3745 26 1 8.0351 -0.4646 -2.7146 27 6 7.8943 0.7595 -0.9121 28 6 3.5753 -1.2069 0.0016 29 6 2.1956 -1.1999 -0.0054 30 6 1.4371 -2.5021 -0.0118 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8899 0.5137 34 1 1.6523 2.1334 -0.0004 35 1 4.1116 2.1445 0.0010 36 1 4.6393 1.6144 -1.5950 37 1 5.9714 2.7843 -1.4003 38 1 5.7948 0.5424 -3.4653 39 1 5.6896 2.2892 -3.7842 40 1 9.7792 2.9097 -4.1237 41 1 9.8126 4.0854 -2.7877 42 1 11.3632 2.0979 -2.4692 43 1 10.1793 2.3192 -1.1567 44 1 13.2172 0.5280 -1.0908 45 1 8.3098 1.7013 -0.5534 46 1 8.2627 -0.0604 -0.2956 47 1 4.1117 -2.1442 0.0020 48 1 1.2491 -2.8180 1.0143 49 1 0.4878 -2.3671 -0.5301 50 1 2.0259 -3.2629 -0.5241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074398360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:00 Heat of formation + Delta-G solvation = -40.438568 kcal Electronic energy + Delta-G solvation = -31358.745779 eV Core-core repulsion = 27350.882840 eV Total energy + Delta-G solvation = -4007.862938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.85919 -40.62056 -39.55241 -37.25502 -36.47397 -34.64034 -33.38854 -33.09141 -33.03118 -31.09399 -29.45324 -28.71778 -27.67048 -26.20615 -25.63310 -24.46506 -23.26125 -23.08837 -22.41802 -20.81023 -19.86199 -18.93839 -18.19328 -17.51434 -17.15948 -17.00946 -16.81988 -16.42020 -16.32246 -16.09803 -15.64786 -15.44382 -15.13759 -15.00694 -14.88159 -14.56885 -14.39011 -14.16631 -13.94021 -13.79507 -13.56099 -13.38363 -13.30160 -13.08958 -12.94586 -12.83407 -12.74251 -12.58951 -12.47259 -12.30374 -12.23475 -12.07650 -11.91988 -11.87344 -11.68497 -11.25445 -10.92444 -10.79227 -10.55967 -9.87017 -9.72774 -9.44456 -8.73821 -7.95157 -5.44227 -0.02964 0.37559 1.41021 1.42961 1.53477 1.59542 1.90927 2.43458 2.70955 2.86483 3.19680 3.38386 3.44124 3.79879 3.84766 3.94040 3.98344 4.00906 4.08954 4.15200 4.21016 4.30545 4.34450 4.41224 4.48222 4.52518 4.59211 4.65195 4.76769 4.78042 4.82098 4.82887 4.86363 4.87955 4.92766 4.92808 5.00118 5.01152 5.18429 5.25451 5.26111 5.31628 5.36685 5.40675 5.44773 5.53703 5.58340 5.65487 5.99806 6.23490 6.33222 6.37307 7.00759 7.04247 7.67584 8.22072 9.09611 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.002941 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.795410 B = 9518.811879 C =10416.191301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.115 4.115 4 C -0.096 4.096 5 C -0.141 4.141 6 C 0.547 3.453 7 O -0.595 6.595 8 N -0.595 5.595 9 C 0.097 3.903 10 C -0.115 4.115 11 C 0.087 3.913 12 H 0.052 0.948 13 O -0.381 6.381 14 C 0.052 3.948 15 C 0.143 3.857 16 N -0.602 5.602 17 C -0.266 4.266 18 H 0.066 0.934 19 C -0.047 4.047 20 N -0.932 5.932 21 Si 0.972 3.028 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.295 1.295 25 C 0.132 3.868 26 H 0.061 0.939 27 C 0.125 3.875 28 C -0.086 4.086 29 C -0.096 4.096 30 C -0.115 4.115 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.162 0.838 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.047 0.953 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.000 1.000 44 H 0.252 0.748 45 H 0.054 0.946 46 H 0.041 0.959 47 H 0.111 0.889 48 H 0.078 0.922 49 H 0.092 0.908 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.938 4.441 -2.615 27.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.066 4.066 3 C -0.133 4.133 4 C -0.114 4.114 5 C -0.144 4.144 6 C 0.338 3.662 7 O -0.477 6.477 8 N -0.327 5.327 9 C -0.023 4.023 10 C -0.153 4.153 11 C 0.027 3.973 12 H 0.070 0.930 13 O -0.300 6.300 14 C -0.025 4.025 15 C 0.018 3.982 16 N -0.325 5.325 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.243 4.243 20 N -0.578 5.578 21 Si 0.799 3.201 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.222 1.222 25 C 0.024 3.976 26 H 0.080 0.920 27 C 0.000 4.000 28 C -0.105 4.105 29 C -0.096 4.096 30 C -0.171 4.171 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.065 0.935 41 H 0.128 0.872 42 H 0.088 0.912 43 H 0.018 0.982 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.129 0.871 48 H 0.097 0.903 49 H 0.110 0.890 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.542 4.220 -2.120 26.959 hybrid contribution 2.331 -1.116 0.204 2.593 sum -24.211 3.104 -1.917 24.484 Atomic orbital electron populations 1.20956 0.88418 1.04233 1.03749 1.20375 0.97991 0.91914 0.96356 1.21333 0.92777 0.99208 0.99963 1.21489 0.95397 0.96336 0.98199 1.19686 0.90425 0.96262 1.08039 1.19128 0.88668 0.78955 0.79472 1.90750 1.71215 1.43735 1.42033 1.48229 1.06651 1.37905 1.39870 1.22401 0.98446 0.92345 0.89148 1.21843 0.91620 1.04467 0.97383 1.22239 0.95082 0.83365 0.96581 0.93032 1.87729 1.23360 1.32012 1.86905 1.23171 0.80796 0.99790 0.98787 1.21329 0.98307 0.83511 0.95052 1.44539 1.00721 1.05803 1.81479 1.19498 0.92666 1.00999 1.26373 0.91609 1.25849 1.00638 1.00645 0.97149 1.70165 1.17234 1.40913 1.29456 0.85147 0.78895 0.78345 0.77684 1.19106 1.20951 1.22206 1.21844 0.84981 0.97919 0.92877 0.92040 1.21866 0.78869 1.00276 0.99005 1.21054 0.94582 0.96391 0.98496 1.19983 0.92124 0.97114 1.00374 1.20890 1.00483 0.92553 1.03222 0.89408 0.90342 0.89883 0.82041 0.83886 0.85914 0.89865 0.89576 0.86669 0.93474 0.87248 0.91203 0.98159 0.93865 0.92817 0.94073 0.87133 0.90344 0.88965 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.17 71.23 0.65 -0.21 16 2 C -0.07 -0.96 5.89 -19.81 -0.12 -1.08 16 3 C -0.12 -1.67 9.68 22.23 0.22 -1.46 16 4 C -0.10 -1.93 7.32 22.53 0.16 -1.77 16 5 C -0.14 -3.96 5.19 -20.09 -0.10 -4.07 16 6 C 0.55 20.62 7.29 86.79 0.63 21.26 16 7 O -0.60 -28.60 16.43 -3.89 -0.06 -28.67 16 8 N -0.60 -21.07 2.96 -821.51 -2.43 -23.50 16 9 C 0.10 2.43 5.08 86.34 0.44 2.87 16 10 C -0.11 -2.81 5.82 30.49 0.18 -2.63 16 11 C 0.09 2.97 2.72 30.50 0.08 3.05 16 12 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 13 O -0.38 -13.50 9.58 -148.98 -1.43 -14.92 16 14 C 0.05 1.96 6.97 72.06 0.50 2.46 16 15 C 0.14 6.98 4.91 86.33 0.42 7.41 16 16 N -0.60 -30.97 2.71 -671.56 -1.82 -32.79 16 17 C -0.27 -14.98 9.70 84.03 0.82 -14.17 16 18 H 0.07 3.66 7.87 -2.91 -0.02 3.64 16 19 C -0.05 -2.67 5.01 84.86 0.43 -2.25 16 20 N -0.93 -55.88 11.04 21.65 0.24 -55.64 16 21 Si 0.97 45.81 29.58 68.60 2.03 47.84 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 C 0.13 5.74 3.04 45.10 0.14 5.88 16 26 H 0.06 2.80 7.99 -2.39 -0.02 2.78 16 27 C 0.12 5.57 5.63 86.58 0.49 6.06 16 28 C -0.09 -2.24 9.35 22.53 0.21 -2.03 16 29 C -0.10 -1.79 5.87 -19.90 -0.12 -1.91 16 30 C -0.12 -1.50 9.17 71.24 0.65 -0.85 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.49 6.70 -2.39 -0.02 0.47 16 33 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 34 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.14 2.52 6.58 -2.91 -0.02 2.50 16 36 H 0.12 2.37 4.19 -2.39 -0.01 2.36 16 37 H 0.08 2.03 7.94 -2.39 -0.02 2.01 16 38 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 42 H 0.07 3.78 6.09 -2.39 -0.01 3.77 16 43 H 0.00 0.02 7.18 -2.39 -0.02 0.00 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.05 2.54 6.58 -2.39 -0.02 2.52 16 46 H 0.04 2.20 7.02 -2.39 -0.02 2.18 16 47 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.09 0.78 6.71 -2.39 -0.02 0.76 16 50 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 Total: -1.00 -76.46 383.87 3.15 -73.31 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.94 Total: 17.82 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 5.68 Total: 16.56 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -4.01 Total: -111.93 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.49 Total: -43.59 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.46 3.15 -73.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074398360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.871 kcal (2) G-P(sol) polarization free energy of solvation -76.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds