Wall clock time and date at job start Wed Apr 1 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38380 * 119.85380 * 2 1 4 4 C 1.37929 * 120.14565 * 179.97438 * 3 2 1 5 5 C 1.39594 * 119.85398 * 0.02562 * 4 3 2 6 6 C 1.47843 * 120.14484 * 179.97438 * 5 4 3 7 7 O 1.21553 * 120.00300 * 326.45541 * 6 5 4 8 8 N 1.34781 * 120.00252 * 146.45448 * 6 5 4 9 9 C 1.46840 * 120.40207 * 354.67267 * 8 6 5 10 10 C 1.53370 * 109.25046 * 232.22169 * 9 8 6 11 11 C 1.52793 * 108.80691 * 306.17059 * 10 9 8 12 12 H 1.09000 * 109.33886 * 303.34188 * 11 10 9 13 13 O 1.42600 * 111.11514 * 182.55824 * 11 10 9 14 14 C 1.43147 * 113.63502 * 176.38639 * 13 11 10 15 15 C 1.53196 * 109.69195 * 61.71527 * 14 13 11 16 16 N 1.47328 * 108.81102 * 308.70166 * 15 14 13 17 17 C 1.36937 * 121.34501 * 230.30654 * 16 15 14 18 18 H 1.08001 * 119.99671 * 155.64848 * 17 16 15 19 19 C 1.38807 * 119.99810 * 335.64607 * 17 16 15 20 20 N 1.31617 * 120.00179 * 343.15898 * 19 17 16 21 21 Si 1.86801 * 119.99835 * 163.16157 * 19 17 16 22 22 H 1.48502 * 109.47165 * 89.99969 * 21 19 17 23 23 H 1.48499 * 109.47283 * 209.99693 * 21 19 17 24 24 H 1.48500 * 109.47118 * 329.99928 * 21 19 17 25 25 C 1.46873 * 117.35247 * 50.33090 * 16 15 14 26 26 H 1.08998 * 110.21748 * 67.94977 * 25 16 15 27 27 C 1.47121 * 120.41214 * 174.65355 * 8 6 5 28 28 C 1.39553 * 119.71249 * 0.25914 * 5 4 3 29 29 C 1.37980 * 119.85145 * 359.46079 * 28 5 4 30 30 C 1.50696 * 119.93092 * 180.28133 * 29 28 5 31 31 H 1.08995 * 109.46674 * 90.00277 * 1 2 3 32 32 H 1.09001 * 109.46624 * 209.99618 * 1 2 3 33 33 H 1.08993 * 109.46825 * 329.99540 * 1 2 3 34 34 H 1.08002 * 119.92453 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.07267 * 180.02562 * 4 3 2 36 36 H 1.08999 * 109.50750 * 112.28528 * 9 8 6 37 37 H 1.09003 * 109.50769 * 352.15239 * 9 8 6 38 38 H 1.08998 * 109.58325 * 186.37476 * 10 9 8 39 39 H 1.09000 * 109.58209 * 65.96652 * 10 9 8 40 40 H 1.08997 * 109.43073 * 181.76902 * 14 13 11 41 41 H 1.09002 * 109.42654 * 301.66186 * 14 13 11 42 42 H 1.08991 * 109.58062 * 68.55230 * 15 14 13 43 43 H 1.08995 * 109.58197 * 188.96406 * 15 14 13 44 44 H 0.97006 * 119.99783 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.73055 * 246.46528 * 27 8 6 46 46 H 1.09009 * 109.72708 * 7.08827 * 27 8 6 47 47 H 1.08001 * 120.07737 * 179.75228 * 28 5 4 48 48 H 1.09003 * 109.47164 * 270.25716 * 30 29 28 49 49 H 1.09001 * 109.47304 * 30.25850 * 30 29 28 50 50 H 1.08999 * 109.47484 * 150.25973 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 0.0001 0.0005 7 8 6.3625 0.8774 -0.5811 8 7 6.4286 -0.9727 0.6455 9 6 5.7082 -1.9696 1.4476 10 6 6.3217 -2.0279 2.8520 11 6 7.8249 -2.2700 2.7232 12 1 7.9959 -3.1832 2.1533 13 8 8.4373 -2.3916 4.0053 14 6 9.8337 -2.7013 3.9472 15 6 10.5830 -1.5739 3.2299 16 7 9.9130 -1.2994 1.9468 17 6 10.6170 -1.2408 0.7738 18 1 10.1188 -1.4320 -0.1651 19 6 11.9710 -0.9355 0.7915 20 7 12.5076 -0.3850 1.8599 21 14 13.0315 -1.3059 -0.7010 22 1 13.0326 -0.1324 -1.6110 23 1 14.4208 -1.5931 -0.2621 24 1 12.4843 -2.4865 -1.4164 25 6 8.4595 -1.0903 1.9757 26 1 8.2230 -0.1596 2.4913 27 6 7.8950 -1.0491 0.5543 28 6 3.5755 -1.2068 -0.0055 29 6 2.1957 -1.1998 -0.0001 30 6 1.4373 -2.5020 -0.0002 31 1 -0.3632 0.0000 -1.0276 32 1 -0.3632 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6523 2.1334 -0.0004 35 1 4.1116 2.1446 0.0010 36 1 5.7912 -2.9475 0.9732 37 1 4.6578 -1.6878 1.5207 38 1 5.8675 -2.8428 3.4156 39 1 6.1466 -1.0831 3.3666 40 1 10.2236 -2.8091 4.9593 41 1 9.9756 -3.6348 3.4026 42 1 10.5715 -0.6765 3.8483 43 1 11.6128 -1.8796 3.0451 44 1 13.4539 -0.1721 1.8723 45 1 8.1838 -1.9527 0.0174 46 1 8.2773 -0.1724 0.0312 47 1 4.1119 -2.1441 -0.0096 48 1 1.2544 -2.8159 -1.0279 49 1 2.0234 -3.2640 0.5136 50 1 0.4853 -2.3681 0.5136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074398362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:09 Heat of formation + Delta-G solvation = -14.865031 kcal Electronic energy + Delta-G solvation = -31307.072699 eV Core-core repulsion = 27300.318713 eV Total energy + Delta-G solvation = -4006.753987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.71245 -39.34139 -38.29815 -36.12078 -34.74391 -33.62384 -32.69106 -31.58614 -31.37273 -29.88463 -28.18576 -27.07363 -26.81822 -25.15861 -24.06396 -22.56215 -22.37221 -21.70347 -20.84588 -19.69845 -19.04371 -17.30701 -16.86748 -16.19231 -15.89753 -15.56664 -15.33655 -15.27017 -14.96298 -14.55876 -14.41041 -14.34777 -13.86502 -13.66564 -13.49324 -13.33468 -13.10760 -13.07201 -12.86980 -12.84599 -12.63765 -12.55817 -12.22904 -11.89007 -11.78878 -11.58562 -11.29216 -11.15878 -10.96595 -10.93813 -10.82911 -10.57491 -10.26058 -10.24022 -9.94954 -9.68743 -9.61173 -9.01276 -8.91805 -8.76673 -8.52962 -8.35824 -6.76954 -5.83586 -3.26300 0.79392 1.15454 2.83646 3.10021 3.36310 3.43212 3.44438 3.63874 4.24082 4.43237 4.44003 4.50033 4.59955 4.73155 4.85535 4.88387 5.06250 5.15930 5.19806 5.26502 5.29731 5.35093 5.38336 5.41469 5.46439 5.51882 5.53608 5.55134 5.69745 5.74176 5.77040 5.87748 5.91101 5.93795 6.10630 6.13376 6.15137 6.22006 6.26787 6.33211 6.35959 6.46540 6.62780 6.68081 6.75022 6.86500 7.14397 7.51792 7.57959 7.70279 7.89603 8.30540 8.33750 9.09740 9.73770 10.29942 11.24366 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.003034 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.174748 B = 9226.400606 C =10197.412806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.069 4.069 3 C -0.124 4.124 4 C -0.066 4.066 5 C -0.125 4.125 6 C 0.556 3.444 7 O -0.532 6.532 8 N -0.604 5.604 9 C 0.097 3.903 10 C -0.124 4.124 11 C 0.077 3.923 12 H 0.052 0.948 13 O -0.389 6.389 14 C 0.039 3.961 15 C 0.140 3.860 16 N -0.588 5.588 17 C -0.256 4.256 18 H 0.074 0.926 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.137 3.863 26 H 0.037 0.963 27 C 0.123 3.877 28 C -0.091 4.091 29 C -0.097 4.097 30 C -0.117 4.117 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.027 0.973 43 H 0.100 0.900 44 H 0.255 0.745 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.136 0.864 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.328 -4.848 -0.299 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.085 4.085 5 C -0.128 4.128 6 C 0.344 3.656 7 O -0.409 6.409 8 N -0.337 5.337 9 C -0.026 4.026 10 C -0.163 4.163 11 C 0.017 3.983 12 H 0.070 0.930 13 O -0.309 6.309 14 C -0.038 4.038 15 C 0.014 3.986 16 N -0.312 5.312 17 C -0.385 4.385 18 H 0.091 0.909 19 C -0.195 4.195 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.029 3.971 26 H 0.054 0.946 27 C 0.001 3.999 28 C -0.109 4.109 29 C -0.097 4.097 30 C -0.173 4.173 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.118 0.882 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.154 0.846 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.874 -4.311 -0.436 23.281 hybrid contribution 1.011 -0.114 -0.829 1.312 sum -21.864 -4.425 -1.266 22.343 Atomic orbital electron populations 1.20909 0.91123 1.03051 1.02526 1.19939 0.96120 0.92630 0.98279 1.20978 0.93764 0.97692 1.01770 1.21207 0.93871 0.97513 0.95886 1.19947 0.93128 0.94428 1.05269 1.18346 0.86875 0.81234 0.79170 1.90799 1.69582 1.35942 1.44603 1.48149 1.08183 1.28852 1.48524 1.22266 0.97267 0.92178 0.90908 1.21868 0.94784 1.03250 0.96397 1.22424 0.91600 0.98604 0.85642 0.92987 1.87739 1.23358 1.92015 1.27742 1.23339 0.81137 0.98939 1.00434 1.21499 0.97653 0.93930 0.85475 1.44062 1.00162 1.82366 1.04645 1.19156 0.91674 1.41848 0.85813 0.90881 1.24999 0.98380 0.98669 0.97449 1.70025 1.12204 1.43465 1.28968 0.86277 0.79804 0.78344 0.82285 1.21220 1.21497 1.20427 1.21283 0.86798 0.95500 0.93527 0.94575 1.21815 0.75842 1.04133 0.98062 1.21448 0.93679 0.97629 0.98191 1.19682 0.93278 0.95171 1.01589 1.20863 1.00094 0.93839 1.02531 0.90925 0.90938 0.91438 0.85473 0.84988 0.91125 0.88147 0.90214 0.90826 0.90064 0.94113 0.95523 0.88172 0.93496 0.90776 0.87891 0.84604 0.91055 0.91331 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.60 36.01 0.35 -0.36 16 2 C -0.07 -0.62 5.89 -104.53 -0.62 -1.23 16 3 C -0.12 -1.22 9.68 -39.64 -0.38 -1.60 16 4 C -0.07 -0.82 9.61 -39.19 -0.38 -1.19 16 5 C -0.12 -1.69 5.33 -104.97 -0.56 -2.25 16 6 C 0.56 9.56 7.40 -12.33 -0.09 9.47 16 7 O -0.53 -11.29 16.20 5.32 0.09 -11.21 16 8 N -0.60 -9.90 2.98 -173.80 -0.52 -10.41 16 9 C 0.10 1.21 4.72 -3.67 -0.02 1.19 16 10 C -0.12 -1.75 5.82 -26.65 -0.16 -1.91 16 11 C 0.08 1.41 2.48 -26.63 -0.07 1.34 16 12 H 0.05 0.96 8.13 -51.93 -0.42 0.53 16 13 O -0.39 -7.73 10.49 -35.23 -0.37 -8.10 16 14 C 0.04 0.78 6.96 37.26 0.26 1.04 16 15 C 0.14 3.37 5.46 -3.49 -0.02 3.35 16 16 N -0.59 -14.73 3.05 -164.38 -0.50 -15.23 16 17 C -0.26 -6.89 8.94 -15.06 -0.13 -7.02 16 18 H 0.07 1.91 6.20 -52.49 -0.33 1.59 16 19 C 0.00 0.10 4.98 -17.43 -0.09 0.01 16 20 N -0.90 -26.02 11.02 55.49 0.61 -25.40 16 21 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.14 2.95 3.03 -67.52 -0.20 2.75 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 C 0.12 2.45 4.47 -3.71 -0.02 2.43 16 28 C -0.09 -0.98 7.01 -39.19 -0.27 -1.26 16 29 C -0.10 -0.88 5.87 -104.68 -0.61 -1.50 16 30 C -0.12 -0.73 9.59 36.00 0.35 -0.39 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.35 5.93 -51.93 -0.31 0.04 16 33 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 1.67 7.98 -52.49 -0.42 1.26 16 36 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 37 H 0.10 1.06 4.38 -51.93 -0.23 0.83 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 2.62 6.03 -51.93 -0.31 2.30 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.07 1.46 7.40 -51.93 -0.38 1.07 16 46 H 0.10 2.37 6.76 -51.92 -0.35 2.02 16 47 H 0.14 1.29 5.81 -52.49 -0.31 0.98 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 50 H 0.07 0.36 5.93 -51.93 -0.31 0.05 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -32.65 381.69 -10.19 -42.84 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.56 Total: 2.26 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.67 Total: 2.87 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.41 Total: -51.05 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.28 Total: -19.31 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.65 -10.19 -42.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074398362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.980 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds