Wall clock time and date at job start Wed Apr 1 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38380 * 119.85380 * 2 1 4 4 C 1.37929 * 120.14565 * 179.97438 * 3 2 1 5 5 C 1.39594 * 119.85398 * 0.02562 * 4 3 2 6 6 C 1.47843 * 120.14484 * 179.97438 * 5 4 3 7 7 O 1.21553 * 120.00300 * 326.45541 * 6 5 4 8 8 N 1.34781 * 120.00252 * 146.45448 * 6 5 4 9 9 C 1.46840 * 120.40207 * 354.67267 * 8 6 5 10 10 C 1.53370 * 109.25046 * 232.22169 * 9 8 6 11 11 C 1.52793 * 108.80691 * 306.17059 * 10 9 8 12 12 H 1.09000 * 109.33886 * 303.34188 * 11 10 9 13 13 O 1.42600 * 111.11514 * 182.55824 * 11 10 9 14 14 C 1.43147 * 113.63502 * 176.38639 * 13 11 10 15 15 C 1.53196 * 109.69195 * 61.71527 * 14 13 11 16 16 N 1.47328 * 108.81102 * 308.70166 * 15 14 13 17 17 C 1.36937 * 121.34501 * 230.30654 * 16 15 14 18 18 H 1.08001 * 119.99671 * 155.64848 * 17 16 15 19 19 C 1.38807 * 119.99810 * 335.64607 * 17 16 15 20 20 N 1.31617 * 120.00179 * 343.15898 * 19 17 16 21 21 Si 1.86801 * 119.99835 * 163.16157 * 19 17 16 22 22 H 1.48502 * 109.47165 * 89.99969 * 21 19 17 23 23 H 1.48499 * 109.47283 * 209.99693 * 21 19 17 24 24 H 1.48500 * 109.47118 * 329.99928 * 21 19 17 25 25 C 1.46873 * 117.35247 * 50.33090 * 16 15 14 26 26 H 1.08998 * 110.21748 * 67.94977 * 25 16 15 27 27 C 1.47121 * 120.41214 * 174.65355 * 8 6 5 28 28 C 1.39553 * 119.71249 * 0.25914 * 5 4 3 29 29 C 1.37980 * 119.85145 * 359.46079 * 28 5 4 30 30 C 1.50696 * 119.93092 * 180.28133 * 29 28 5 31 31 H 1.08995 * 109.46674 * 90.00277 * 1 2 3 32 32 H 1.09001 * 109.46624 * 209.99618 * 1 2 3 33 33 H 1.08993 * 109.46825 * 329.99540 * 1 2 3 34 34 H 1.08002 * 119.92453 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.07267 * 180.02562 * 4 3 2 36 36 H 1.08999 * 109.50750 * 112.28528 * 9 8 6 37 37 H 1.09003 * 109.50769 * 352.15239 * 9 8 6 38 38 H 1.08998 * 109.58325 * 186.37476 * 10 9 8 39 39 H 1.09000 * 109.58209 * 65.96652 * 10 9 8 40 40 H 1.08997 * 109.43073 * 181.76902 * 14 13 11 41 41 H 1.09002 * 109.42654 * 301.66186 * 14 13 11 42 42 H 1.08991 * 109.58062 * 68.55230 * 15 14 13 43 43 H 1.08995 * 109.58197 * 188.96406 * 15 14 13 44 44 H 0.97006 * 119.99783 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.73055 * 246.46528 * 27 8 6 46 46 H 1.09009 * 109.72708 * 7.08827 * 27 8 6 47 47 H 1.08001 * 120.07737 * 179.75228 * 28 5 4 48 48 H 1.09003 * 109.47164 * 270.25716 * 30 29 28 49 49 H 1.09001 * 109.47304 * 30.25850 * 30 29 28 50 50 H 1.08999 * 109.47484 * 150.25973 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 0.0001 0.0005 7 8 6.3625 0.8774 -0.5811 8 7 6.4286 -0.9727 0.6455 9 6 5.7082 -1.9696 1.4476 10 6 6.3217 -2.0279 2.8520 11 6 7.8249 -2.2700 2.7232 12 1 7.9959 -3.1832 2.1533 13 8 8.4373 -2.3916 4.0053 14 6 9.8337 -2.7013 3.9472 15 6 10.5830 -1.5739 3.2299 16 7 9.9130 -1.2994 1.9468 17 6 10.6170 -1.2408 0.7738 18 1 10.1188 -1.4320 -0.1651 19 6 11.9710 -0.9355 0.7915 20 7 12.5076 -0.3850 1.8599 21 14 13.0315 -1.3059 -0.7010 22 1 13.0326 -0.1324 -1.6110 23 1 14.4208 -1.5931 -0.2621 24 1 12.4843 -2.4865 -1.4164 25 6 8.4595 -1.0903 1.9757 26 1 8.2230 -0.1596 2.4913 27 6 7.8950 -1.0491 0.5543 28 6 3.5755 -1.2068 -0.0055 29 6 2.1957 -1.1998 -0.0001 30 6 1.4373 -2.5020 -0.0002 31 1 -0.3632 0.0000 -1.0276 32 1 -0.3632 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6523 2.1334 -0.0004 35 1 4.1116 2.1446 0.0010 36 1 5.7912 -2.9475 0.9732 37 1 4.6578 -1.6878 1.5207 38 1 5.8675 -2.8428 3.4156 39 1 6.1466 -1.0831 3.3666 40 1 10.2236 -2.8091 4.9593 41 1 9.9756 -3.6348 3.4026 42 1 10.5715 -0.6765 3.8483 43 1 11.6128 -1.8796 3.0451 44 1 13.4539 -0.1721 1.8723 45 1 8.1838 -1.9527 0.0174 46 1 8.2773 -0.1724 0.0312 47 1 4.1119 -2.1441 -0.0096 48 1 1.2544 -2.8159 -1.0279 49 1 2.0234 -3.2640 0.5136 50 1 0.4853 -2.3681 0.5136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074398362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:08 Heat of formation + Delta-G solvation = -35.125326 kcal Electronic energy + Delta-G solvation = -31307.951251 eV Core-core repulsion = 27300.318713 eV Total energy + Delta-G solvation = -4007.632539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.91860 -40.58925 -39.59974 -37.56360 -36.59388 -34.52284 -33.69816 -33.14919 -32.82577 -31.42046 -29.31593 -28.44738 -27.70397 -26.57752 -25.62609 -23.96649 -23.50414 -22.85289 -22.13150 -21.39908 -20.20188 -18.75803 -18.49758 -17.48961 -17.16294 -17.00109 -16.70018 -16.50072 -16.33543 -16.03921 -15.71752 -15.34820 -15.28073 -15.03822 -14.81015 -14.71486 -14.50405 -14.18755 -13.95370 -13.92295 -13.50021 -13.41914 -13.32225 -13.03606 -12.87284 -12.84952 -12.72378 -12.58840 -12.44159 -12.32274 -12.14274 -12.08079 -11.93452 -11.86764 -11.71492 -11.29146 -10.98842 -10.80506 -10.53916 -9.85172 -9.72534 -9.50099 -8.81253 -7.94032 -5.40358 -0.10403 0.36731 1.42960 1.44031 1.53525 1.62319 1.82579 2.44679 2.70167 2.82544 3.20244 3.38238 3.39635 3.75409 3.83354 3.86921 3.95498 3.97391 4.04644 4.14384 4.18068 4.28901 4.32123 4.37612 4.46201 4.50147 4.53257 4.58977 4.66464 4.75275 4.77565 4.81949 4.82538 4.88017 4.94137 4.99128 5.02027 5.03208 5.09915 5.23280 5.25799 5.34584 5.35689 5.40832 5.43513 5.52265 5.58684 5.67141 5.99300 6.21376 6.28525 6.31449 7.00004 7.01149 7.69212 8.23226 9.12182 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.003034 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.174748 B = 9226.400606 C =10197.412806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.124 4.124 4 C -0.087 4.087 5 C -0.148 4.148 6 C 0.550 3.450 7 O -0.590 6.590 8 N -0.602 5.602 9 C 0.095 3.905 10 C -0.116 4.116 11 C 0.082 3.918 12 H 0.062 0.938 13 O -0.392 6.392 14 C 0.052 3.948 15 C 0.143 3.857 16 N -0.605 5.605 17 C -0.261 4.261 18 H 0.077 0.923 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.291 1.291 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.133 3.867 26 H -0.001 1.001 27 C 0.138 3.862 28 C -0.090 4.090 29 C -0.094 4.094 30 C -0.117 4.117 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.052 0.948 42 H -0.007 1.007 43 H 0.077 0.923 44 H 0.252 0.748 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.152 0.848 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.405 -7.981 -0.336 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.151 4.151 6 C 0.341 3.659 7 O -0.471 6.471 8 N -0.334 5.334 9 C -0.025 4.025 10 C -0.155 4.155 11 C 0.023 3.977 12 H 0.080 0.920 13 O -0.311 6.311 14 C -0.025 4.025 15 C 0.018 3.982 16 N -0.330 5.330 17 C -0.391 4.391 18 H 0.094 0.906 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.218 1.218 23 H -0.214 1.214 24 H -0.189 1.189 25 C 0.026 3.974 26 H 0.017 0.983 27 C 0.015 3.985 28 C -0.108 4.108 29 C -0.094 4.094 30 C -0.173 4.173 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.166 0.834 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.071 0.929 42 H 0.011 0.989 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.170 0.830 48 H 0.098 0.902 49 H 0.099 0.901 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.008 -7.486 -0.451 28.030 hybrid contribution 2.153 0.954 -0.814 2.491 sum -24.855 -6.532 -1.265 25.730 Atomic orbital electron populations 1.21005 0.88517 1.04441 1.03595 1.20391 0.97986 0.92034 0.96004 1.21219 0.92521 0.99437 1.01035 1.21218 0.95245 0.96639 0.97480 1.19700 0.90426 0.96222 1.08731 1.19078 0.88637 0.80203 0.78012 1.90755 1.71087 1.38155 1.47098 1.48200 1.06627 1.29728 1.48850 1.22645 0.97900 0.92468 0.89510 1.21910 0.91670 1.04073 0.97809 1.22498 0.93793 0.96763 0.84643 0.92018 1.87749 1.22991 1.91845 1.28525 1.23185 0.80799 0.97024 1.01508 1.21380 0.97421 0.94229 0.85205 1.44366 1.01686 1.82462 1.04470 1.19486 0.92047 1.40765 0.86752 0.90583 1.25789 0.99621 0.99030 1.00175 1.70186 1.12105 1.45040 1.30934 0.85271 0.78017 0.78164 0.79006 1.21818 1.21382 1.18919 1.21429 0.85408 0.95774 0.94809 0.98295 1.21345 0.78453 1.02211 0.96502 1.21591 0.94593 0.96828 0.97826 1.20073 0.92658 0.96790 0.99859 1.20964 1.00615 0.92207 1.03534 0.89813 0.89227 0.90492 0.83415 0.86916 0.87939 0.85457 0.86299 0.92144 0.87254 0.92926 0.98899 0.90509 0.93932 0.90231 0.92255 0.83023 0.90164 0.90122 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.60 71.24 0.68 -0.19 16 2 C -0.06 -0.91 5.89 -19.80 -0.12 -1.03 16 3 C -0.12 -2.24 9.68 22.23 0.22 -2.02 16 4 C -0.09 -2.20 9.61 22.52 0.22 -1.98 16 5 C -0.15 -3.99 5.33 -20.09 -0.11 -4.09 16 6 C 0.55 19.80 7.40 86.79 0.64 20.45 16 7 O -0.59 -27.22 16.20 -3.88 -0.06 -27.28 16 8 N -0.60 -19.95 2.98 -822.05 -2.45 -22.40 16 9 C 0.10 2.12 4.72 86.44 0.41 2.53 16 10 C -0.12 -2.97 5.82 30.65 0.18 -2.79 16 11 C 0.08 2.91 2.48 30.66 0.08 2.98 16 12 H 0.06 2.11 8.13 -2.39 -0.02 2.09 16 13 O -0.39 -15.00 10.49 -148.98 -1.56 -16.57 16 14 C 0.05 2.04 6.96 72.05 0.50 2.54 16 15 C 0.14 7.18 5.46 86.29 0.47 7.65 16 16 N -0.60 -31.63 3.05 -673.98 -2.06 -33.69 16 17 C -0.26 -14.60 8.94 84.03 0.75 -13.85 16 18 H 0.08 4.12 6.20 -2.91 -0.02 4.10 16 19 C -0.05 -2.91 4.98 84.86 0.42 -2.48 16 20 N -0.94 -56.57 11.02 21.65 0.24 -56.33 16 21 Si 0.97 45.86 29.59 68.60 2.03 47.89 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.13 5.98 3.03 45.05 0.14 6.11 16 26 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 27 C 0.14 5.75 4.47 86.26 0.39 6.13 16 28 C -0.09 -1.71 7.01 22.53 0.16 -1.55 16 29 C -0.09 -1.35 5.87 -19.90 -0.12 -1.46 16 30 C -0.12 -0.86 9.59 71.23 0.68 -0.18 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 0.39 5.93 -2.39 -0.01 0.38 16 33 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 34 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.11 3.16 7.98 -2.91 -0.02 3.14 16 36 H 0.10 1.72 7.98 -2.39 -0.02 1.70 16 37 H 0.13 2.24 4.38 -2.39 -0.01 2.23 16 38 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.08 4.20 6.03 -2.39 -0.01 4.18 16 44 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 45 H 0.08 3.19 7.40 -2.39 -0.02 3.17 16 46 H 0.06 2.97 6.76 -2.38 -0.02 2.96 16 47 H 0.15 2.30 5.81 -2.91 -0.02 2.28 16 48 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.08 0.45 8.09 -2.39 -0.02 0.43 16 50 H 0.09 0.38 5.93 -2.39 -0.01 0.37 16 Total: -1.00 -78.16 381.69 2.67 -75.49 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.95 Total: 16.13 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 5.59 Total: 16.77 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.27 Total: -112.43 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -1.63 Total: -43.85 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -78.16 2.67 -75.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074398362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.364 kcal (2) G-P(sol) polarization free energy of solvation -78.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds