Wall clock time and date at job start Wed Apr 1 2020 02:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 119.99807 * 2 1 4 4 C 1.38220 * 119.99972 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99874 * 0.02562 * 4 3 2 6 6 C 1.38218 * 119.99805 * 359.70542 * 5 4 3 7 7 C 1.38211 * 120.00450 * 179.97438 * 2 1 3 8 8 C 1.50702 * 119.99290 * 0.02562 * 7 2 1 9 9 C 1.50694 * 109.47452 * 85.00257 * 8 7 2 10 10 O 1.21285 * 120.00012 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00237 * 180.02562 * 9 8 7 12 12 C 1.46989 * 120.71916 * 359.97438 * 11 9 8 13 13 C 1.53165 * 108.43683 * 234.53572 * 12 11 9 14 14 C 1.52510 * 109.79207 * 305.46298 * 13 12 11 15 15 H 1.09000 * 108.93091 * 179.01160 * 14 13 12 16 16 O 1.42687 * 110.61605 * 298.71125 * 14 13 12 17 17 C 1.43073 * 113.87731 * 185.33964 * 16 14 13 18 18 C 1.53234 * 109.44792 * 298.35381 * 17 16 14 19 19 N 1.47177 * 108.68726 * 51.59568 * 18 17 16 20 20 C 1.36933 * 121.22581 * 129.04039 * 19 18 17 21 21 H 1.08000 * 119.99768 * 224.28667 * 20 19 18 22 22 C 1.38811 * 119.99753 * 44.56778 * 20 19 18 23 23 N 1.31624 * 119.99681 * 212.01668 * 22 20 19 24 24 Si 1.86802 * 120.00508 * 32.01324 * 22 20 19 25 25 H 1.48496 * 109.46788 * 84.69711 * 24 22 20 26 26 H 1.48497 * 109.46964 * 204.70044 * 24 22 20 27 27 H 1.48505 * 109.46640 * 324.69905 * 24 22 20 28 28 C 1.47596 * 117.54672 * 309.30896 * 19 18 17 29 29 H 1.08999 * 110.31425 * 172.03983 * 28 19 18 30 30 C 1.46784 * 120.72551 * 179.97438 * 11 9 8 31 31 H 1.08999 * 109.46878 * 270.02723 * 1 2 3 32 32 H 1.09004 * 109.47306 * 30.02387 * 1 2 3 33 33 H 1.08993 * 109.46964 * 150.02578 * 1 2 3 34 34 H 1.08000 * 120.00173 * 359.97438 * 3 2 1 35 35 H 1.08003 * 120.00076 * 180.02562 * 4 3 2 36 36 H 1.08000 * 119.99883 * 179.97438 * 5 4 3 37 37 H 1.07997 * 119.99638 * 180.29978 * 6 5 4 38 38 H 1.08996 * 109.47457 * 324.99393 * 8 7 2 39 39 H 1.09009 * 109.46841 * 204.99865 * 8 7 2 40 40 H 1.08999 * 109.64084 * 114.85429 * 12 11 9 41 41 H 1.08993 * 109.64445 * 354.22190 * 12 11 9 42 42 H 1.08999 * 109.41429 * 185.36606 * 13 12 11 43 43 H 1.08994 * 109.41565 * 65.56445 * 13 12 11 44 44 H 1.09007 * 109.47191 * 178.36731 * 17 16 14 45 45 H 1.08991 * 109.47893 * 58.35406 * 17 16 14 46 46 H 1.08995 * 109.60538 * 291.83396 * 18 17 16 47 47 H 1.08998 * 109.72930 * 171.43010 * 18 17 16 48 48 H 0.97007 * 119.99898 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.51957 * 245.64089 * 30 11 9 50 50 H 1.09003 * 109.51919 * 5.81632 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0867 -2.8755 -1.4148 10 8 1.4112 -2.1528 -2.3333 11 7 0.4052 -4.0121 -1.6601 12 6 0.0035 -4.8992 -0.5591 13 6 0.5330 -6.3061 -0.8529 14 6 0.0569 -6.7601 -2.2288 15 1 0.4556 -7.7543 -2.4307 16 8 -1.3682 -6.8149 -2.2746 17 6 -1.8883 -7.3485 -3.4959 18 6 -1.4636 -6.4540 -4.6653 19 7 -0.0071 -6.2532 -4.6006 20 6 0.7890 -6.4726 -5.6930 21 1 1.7196 -7.0097 -5.5838 22 6 0.4026 -5.9997 -6.9395 23 7 0.7335 -6.6637 -8.0268 24 14 -0.5868 -4.4210 -7.0741 25 1 0.3353 -3.2570 -7.0691 26 1 -1.3649 -4.4308 -8.3389 27 1 -1.5174 -4.3204 -5.9212 28 6 0.5647 -5.8123 -3.3133 29 1 1.6536 -5.8363 -3.3549 30 6 0.0479 -4.3910 -3.0325 31 1 -0.3633 0.0005 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6582 2.1327 -0.0004 35 1 4.1204 2.1328 0.0010 36 1 5.3517 0.0001 0.0005 37 1 4.1206 -2.1321 0.0110 38 1 0.5337 -2.3956 0.5897 39 1 2.0694 -3.2823 0.4353 40 1 -1.0838 -4.9246 -0.4871 41 1 0.4274 -4.5363 0.3771 42 1 0.1640 -6.9976 -0.0954 43 1 1.6226 -6.2949 -0.8319 44 1 -2.9765 -7.3845 -3.4424 45 1 -1.4985 -8.3549 -3.6479 46 1 -1.9691 -5.4912 -4.5916 47 1 -1.7251 -6.9330 -5.6088 48 1 0.4632 -6.3334 -8.8979 49 1 -1.0360 -4.3692 -3.1458 50 1 0.5024 -3.6910 -3.7336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074403175.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:16 Heat of formation + Delta-G solvation = -44.470833 kcal Electronic energy + Delta-G solvation = -31587.729258 eV Core-core repulsion = 27579.691468 eV Total energy + Delta-G solvation = -4008.037791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.69171 -40.65653 -39.57816 -37.12804 -36.49478 -34.35674 -33.87281 -33.27404 -32.94638 -31.33823 -29.70792 -28.79729 -27.57889 -25.96540 -25.49580 -24.58401 -23.08847 -22.89331 -22.03001 -20.77234 -19.66272 -19.02789 -18.25020 -17.43223 -17.26274 -17.11986 -16.92336 -16.74798 -16.35535 -16.12088 -15.88961 -15.61518 -15.39434 -14.97164 -14.78448 -14.55743 -14.38626 -14.06805 -14.02602 -13.94042 -13.82600 -13.65002 -13.33844 -13.22978 -12.99882 -12.85858 -12.84214 -12.78877 -12.55253 -12.32964 -12.04005 -11.98921 -11.82622 -11.79098 -11.60069 -11.21208 -10.91499 -10.87927 -10.43729 -9.70663 -9.66724 -9.44666 -8.64052 -8.40080 -5.74317 0.43172 0.52131 1.24275 1.35167 1.41812 1.64980 2.00757 2.32433 2.78380 2.87747 2.91245 3.23681 3.61717 3.73427 3.90786 3.92406 4.00844 4.08002 4.10806 4.18017 4.18620 4.23880 4.36347 4.37253 4.40439 4.43247 4.49011 4.56270 4.63018 4.70971 4.74624 4.79314 4.80773 4.84009 4.86646 4.91327 4.93918 4.98359 5.06946 5.17068 5.20177 5.29500 5.30263 5.49411 5.59160 5.63377 5.73864 5.81121 6.09911 6.16057 6.28380 6.50060 6.84995 7.22193 7.45349 7.99354 8.79905 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.003475 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.407688 B = 8055.769849 C = 9127.001503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.127 4.127 5 C -0.138 4.138 6 C -0.120 4.120 7 C -0.084 4.084 8 C -0.091 4.091 9 C 0.508 3.492 10 O -0.589 6.589 11 N -0.607 5.607 12 C 0.108 3.892 13 C -0.117 4.117 14 C 0.086 3.914 15 H 0.047 0.953 16 O -0.376 6.376 17 C 0.057 3.943 18 C 0.101 3.899 19 N -0.606 5.606 20 C -0.272 4.272 21 H 0.039 0.961 22 C 0.015 3.985 23 N -0.921 5.921 24 Si 0.901 3.099 25 H -0.303 1.303 26 H -0.291 1.291 27 H -0.241 1.241 28 C 0.127 3.873 29 H 0.062 0.938 30 C 0.118 3.882 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.048 0.952 46 H 0.031 0.969 47 H 0.058 0.942 48 H 0.267 0.733 49 H 0.058 0.942 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 7.893 25.332 26.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.154 4.154 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.138 4.138 7 C -0.085 4.085 8 C -0.130 4.130 9 C 0.298 3.702 10 O -0.469 6.469 11 N -0.340 5.340 12 C -0.013 4.013 13 C -0.155 4.155 14 C 0.027 3.973 15 H 0.065 0.935 16 O -0.295 6.295 17 C -0.021 4.021 18 C -0.024 4.024 19 N -0.331 5.331 20 C -0.401 4.401 21 H 0.057 0.943 22 C -0.186 4.186 23 N -0.561 5.561 24 Si 0.728 3.272 25 H -0.232 1.232 26 H -0.217 1.217 27 H -0.165 1.165 28 C 0.021 3.979 29 H 0.080 0.920 30 C -0.008 4.008 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.144 0.856 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.137 0.863 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.695 8.274 24.797 26.196 hybrid contribution 0.131 0.702 -1.905 2.035 sum -1.564 8.976 22.892 24.638 Atomic orbital electron populations 1.20826 0.90544 1.02425 1.03201 1.20029 0.96875 0.93039 0.98840 1.21282 0.94854 0.97860 1.01398 1.21435 0.94443 0.98907 0.99676 1.21388 1.00871 0.92503 1.00870 1.21273 0.93688 0.99146 0.99676 1.19421 0.93917 0.93961 1.01178 1.20776 1.03465 0.96457 0.92282 1.21312 0.76658 0.79948 0.92294 1.90720 1.55366 1.52406 1.48414 1.48318 1.55445 1.22562 1.07700 1.22042 1.01439 0.88606 0.89236 1.21861 1.01769 0.97444 0.94431 1.22141 0.81808 0.97488 0.95887 0.93517 1.87752 1.20123 1.84888 1.36741 1.23033 0.99712 0.95602 0.83730 1.22068 0.84024 0.97625 0.98667 1.44541 1.03023 1.77657 1.07868 1.18441 1.05355 1.30389 0.85930 0.94332 1.26085 0.98539 0.98875 0.95095 1.70087 1.49165 1.37948 0.98940 0.86480 0.79504 0.83200 0.77966 1.23153 1.21725 1.16536 1.21910 0.97118 0.92024 0.86884 0.91978 1.21825 0.99164 0.96654 0.83121 0.88628 0.91498 0.93041 0.84683 0.84169 0.84412 0.85140 0.85170 0.85000 0.90001 0.85567 0.86751 0.89212 0.86281 0.93404 0.95110 0.92363 0.92378 0.92362 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.22 71.23 0.66 -1.53 16 2 C -0.09 -2.03 5.88 -19.87 -0.12 -2.15 16 3 C -0.14 -2.92 9.70 22.27 0.22 -2.70 16 4 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 5 C -0.14 -2.90 10.05 22.27 0.22 -2.68 16 6 C -0.12 -2.72 9.68 22.27 0.22 -2.50 16 7 C -0.08 -1.97 4.37 -19.87 -0.09 -2.06 16 8 C -0.09 -1.73 3.50 29.10 0.10 -1.63 16 9 C 0.51 15.36 6.92 87.66 0.61 15.96 16 10 O -0.59 -24.74 15.45 -3.05 -0.05 -24.78 16 11 N -0.61 -17.56 2.96 -817.93 -2.42 -19.99 16 12 C 0.11 1.97 6.18 86.34 0.53 2.50 16 13 C -0.12 -2.27 5.82 30.49 0.18 -2.10 16 14 C 0.09 2.61 2.71 30.34 0.08 2.69 16 15 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 16 O -0.38 -11.45 9.59 -148.98 -1.43 -12.87 16 17 C 0.06 1.82 6.97 72.06 0.50 2.32 16 18 C 0.10 4.18 4.31 86.33 0.37 4.55 16 19 N -0.61 -28.63 2.10 -672.26 -1.41 -30.04 16 20 C -0.27 -15.54 9.76 84.03 0.82 -14.72 16 21 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 22 C 0.01 0.86 4.97 84.86 0.42 1.28 16 23 N -0.92 -57.04 13.97 21.65 0.30 -56.74 16 24 Si 0.90 46.78 27.53 68.60 1.89 48.67 16 25 H -0.30 -16.69 7.11 99.48 0.71 -15.98 16 26 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 27 H -0.24 -11.68 5.11 99.48 0.51 -11.17 16 28 C 0.13 5.06 3.03 44.97 0.14 5.20 16 29 H 0.06 2.68 7.99 -2.39 -0.02 2.66 16 30 C 0.12 4.58 5.64 86.60 0.49 5.07 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.25 8.09 -2.38 -0.02 1.24 16 33 H 0.05 1.14 6.16 -2.39 -0.01 1.12 16 34 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.13 1.71 6.78 -2.39 -0.02 1.70 16 39 H 0.13 1.68 7.62 -2.38 -0.02 1.66 16 40 H 0.08 1.50 7.94 -2.39 -0.02 1.48 16 41 H 0.13 1.22 5.95 -2.39 -0.01 1.20 16 42 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.03 1.30 5.53 -2.39 -0.01 1.29 16 47 H 0.06 2.59 7.40 -2.39 -0.02 2.58 16 48 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 49 H 0.06 2.33 6.56 -2.39 -0.02 2.31 16 50 H 0.04 1.99 7.00 -2.39 -0.02 1.97 16 Total: -1.00 -78.95 384.12 3.19 -75.76 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.73 Total: 14.82 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.57 Total: 5.17 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -3.53 Total: -106.77 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.48 Total: -37.66 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.89 Total: 48.67 kcal Total: -78.95 3.19 -75.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074403175.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.291 kcal (2) G-P(sol) polarization free energy of solvation -78.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds