Wall clock time and date at job start Wed Apr 1 2020 02:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38257 * 119.99936 * 2 1 4 4 C 1.38214 * 119.99998 * 180.02562 * 3 2 1 5 5 C 1.38247 * 120.00058 * 359.95931 * 4 3 2 6 6 C 1.38219 * 119.99986 * 359.97438 * 5 4 3 7 7 C 1.38204 * 120.00265 * 180.02562 * 2 1 3 8 8 C 1.50703 * 119.99978 * 359.97438 * 7 2 1 9 9 C 1.50703 * 109.47136 * 84.99900 * 8 7 2 10 10 O 1.21281 * 120.00098 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00221 * 180.02562 * 9 8 7 12 12 C 1.46841 * 120.40422 * 359.72544 * 11 9 8 13 13 C 1.52911 * 109.49278 * 232.18176 * 12 11 9 14 14 C 1.52787 * 108.89253 * 306.41994 * 13 12 11 15 15 H 1.09001 * 108.94610 * 302.94882 * 14 13 12 16 16 O 1.42604 * 111.11586 * 182.42145 * 14 13 12 17 17 C 1.43149 * 113.62711 * 176.37220 * 16 14 13 18 18 C 1.53195 * 109.73535 * 61.69340 * 17 16 14 19 19 N 1.47362 * 108.80139 * 308.78207 * 18 17 16 20 20 C 1.36933 * 121.29961 * 230.25944 * 19 18 17 21 21 H 1.08007 * 119.99794 * 152.50107 * 20 19 18 22 22 C 1.38811 * 120.00463 * 332.50457 * 20 19 18 23 23 N 1.31614 * 119.99743 * 344.73655 * 22 20 19 24 24 Si 1.86800 * 119.99886 * 164.72854 * 22 20 19 25 25 H 1.48492 * 109.47285 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46558 * 120.00399 * 24 22 20 27 27 H 1.48506 * 109.47087 * 239.99772 * 24 22 20 28 28 C 1.46876 * 117.39227 * 50.24129 * 19 18 17 29 29 H 1.08994 * 109.65853 * 68.36122 * 28 19 18 30 30 C 1.47130 * 120.40775 * 180.02562 * 11 9 8 31 31 H 1.09007 * 109.47531 * 89.99566 * 1 2 3 32 32 H 1.09000 * 109.47278 * 209.99305 * 1 2 3 33 33 H 1.09000 * 109.47565 * 329.99903 * 1 2 3 34 34 H 1.08007 * 120.00116 * 0.02562 * 3 2 1 35 35 H 1.08006 * 119.99803 * 179.97438 * 4 3 2 36 36 H 1.08001 * 119.99940 * 179.72198 * 5 4 3 37 37 H 1.07996 * 119.99926 * 180.02562 * 6 5 4 38 38 H 1.08995 * 109.47567 * 205.00126 * 8 7 2 39 39 H 1.09002 * 109.47043 * 325.00679 * 8 7 2 40 40 H 1.08995 * 109.50845 * 352.17142 * 12 11 9 41 41 H 1.08994 * 109.50736 * 112.31496 * 12 11 9 42 42 H 1.08997 * 109.65324 * 186.52249 * 13 12 11 43 43 H 1.09004 * 109.54070 * 66.24034 * 13 12 11 44 44 H 1.09000 * 109.43039 * 301.61477 * 17 16 14 45 45 H 1.09001 * 109.42617 * 181.77267 * 17 16 14 46 46 H 1.08998 * 109.58563 * 188.98784 * 18 17 16 47 47 H 1.09000 * 109.58479 * 68.57159 * 18 17 16 48 48 H 0.97003 * 119.99757 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.72630 * 246.44000 * 30 11 9 50 50 H 1.09005 * 109.72379 * 7.06710 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0002 6 6 3.5806 -1.1969 0.0012 7 6 2.1981 -1.1968 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 6 1.0856 -2.8748 -1.4159 10 8 1.4101 -2.1521 -2.3343 11 7 0.4040 -4.0114 -1.6612 12 6 0.0119 -4.8959 -0.5567 13 6 0.4781 -6.3215 -0.8545 14 6 -0.0454 -6.7363 -2.2286 15 1 -1.1315 -6.6437 -2.2363 16 8 0.3160 -8.0821 -2.5313 17 6 -0.2179 -8.5542 -3.7727 18 6 0.3257 -7.7048 -4.9260 19 7 0.1093 -6.2817 -4.6107 20 6 -0.4811 -5.4354 -5.5109 21 1 -1.0267 -4.5711 -5.1619 22 6 -0.3783 -5.6883 -6.8719 23 7 0.5163 -6.5453 -7.3163 24 14 -1.5100 -4.8124 -8.0726 25 1 -2.4187 -3.9064 -7.3254 26 1 -0.6975 -4.0190 -9.0295 27 1 -2.3128 -5.8153 -8.8176 28 6 0.5513 -5.8067 -3.2930 29 1 1.6399 -5.8256 -3.2426 30 6 0.0494 -4.3843 -3.0396 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1327 0.0004 35 1 4.1204 2.1327 -0.0010 36 1 5.3517 0.0002 -0.0052 37 1 4.1206 -2.1321 0.0018 38 1 2.0696 -3.2824 0.4333 39 1 0.5341 -2.3959 0.5892 40 1 0.4728 -4.5494 0.3683 41 1 -1.0727 -4.8859 -0.4498 42 1 0.0897 -7.0003 -0.0953 43 1 1.5676 -6.3566 -0.8528 44 1 -1.3052 -8.4821 -3.7507 45 1 0.0728 -9.5944 -3.9202 46 1 -0.1999 -7.9591 -5.8464 47 1 1.3923 -7.8938 -5.0478 48 1 0.5883 -6.7217 -8.2674 49 1 -1.0329 -4.3487 -3.1635 50 1 0.5227 -3.6962 -3.7402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074403177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:24 Heat of formation + Delta-G solvation = -45.148923 kcal Electronic energy + Delta-G solvation = -31279.908029 eV Core-core repulsion = 27271.840834 eV Total energy + Delta-G solvation = -4008.067195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.64042 -40.56905 -39.59961 -37.39434 -36.55937 -34.37630 -33.53152 -33.09761 -32.86471 -31.46278 -29.47742 -28.56963 -27.56846 -26.40484 -25.46254 -23.79600 -23.12523 -22.75640 -21.85259 -21.35950 -19.92833 -18.71345 -18.39838 -17.34286 -17.18389 -17.08724 -16.91665 -16.58762 -16.28356 -16.03868 -15.74032 -15.56010 -15.36826 -14.99652 -14.72644 -14.64686 -14.36430 -14.05910 -13.98465 -13.89277 -13.69393 -13.33770 -13.27666 -13.00933 -12.89297 -12.86596 -12.74086 -12.66976 -12.37413 -12.33789 -12.04678 -11.93063 -11.82407 -11.76175 -11.70548 -11.25137 -10.88546 -10.77192 -10.54202 -9.68632 -9.65360 -9.44946 -8.76597 -7.94320 -5.42976 0.44081 0.52869 1.41026 1.43273 1.53230 1.64396 1.95434 2.44348 2.81588 2.89620 3.21178 3.43358 3.62643 3.73149 3.90269 3.94126 3.98936 4.09525 4.11571 4.16439 4.18101 4.27347 4.32095 4.40316 4.44096 4.50237 4.54084 4.56051 4.60035 4.69755 4.76088 4.83049 4.84275 4.84806 4.87173 4.96023 5.01290 5.10747 5.12306 5.19994 5.31304 5.33269 5.44939 5.52249 5.59132 5.60701 5.64174 5.75560 6.16970 6.23870 6.32818 6.45310 7.02180 7.20955 7.69890 8.25028 9.12079 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.003258 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.129680 B = 8591.785809 C = 9929.333848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.126 4.126 5 C -0.139 4.139 6 C -0.121 4.121 7 C -0.085 4.085 8 C -0.093 4.093 9 C 0.510 3.490 10 O -0.584 6.584 11 N -0.612 5.612 12 C 0.107 3.893 13 C -0.118 4.118 14 C 0.081 3.919 15 H 0.057 0.943 16 O -0.392 6.392 17 C 0.053 3.947 18 C 0.147 3.853 19 N -0.607 5.607 20 C -0.261 4.261 21 H 0.074 0.926 22 C -0.048 4.048 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.266 1.266 26 H -0.296 1.296 27 H -0.283 1.283 28 C 0.134 3.866 29 H 0.002 0.998 30 C 0.140 3.860 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.109 0.891 46 H 0.069 0.931 47 H -0.006 1.006 48 H 0.251 0.749 49 H 0.070 0.930 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 7.271 22.948 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.144 4.144 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.085 4.085 8 C -0.132 4.132 9 C 0.300 3.700 10 O -0.463 6.463 11 N -0.345 5.345 12 C -0.014 4.014 13 C -0.156 4.156 14 C 0.022 3.978 15 H 0.075 0.925 16 O -0.311 6.311 17 C -0.025 4.025 18 C 0.021 3.979 19 N -0.332 5.332 20 C -0.390 4.390 21 H 0.091 0.909 22 C -0.243 4.243 23 N -0.581 5.581 24 Si 0.793 3.207 25 H -0.190 1.190 26 H -0.224 1.224 27 H -0.209 1.209 28 C 0.027 3.973 29 H 0.019 0.981 30 C 0.017 3.983 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.127 0.873 46 H 0.088 0.912 47 H 0.013 0.987 48 H 0.060 0.940 49 H 0.088 0.912 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.396 7.507 22.433 23.659 hybrid contribution -0.062 0.322 -2.149 2.174 sum -0.457 7.829 20.284 21.747 Atomic orbital electron populations 1.20870 0.90388 1.04154 1.01804 1.20024 0.96975 0.92928 0.98697 1.21299 0.94813 0.97934 1.01280 1.21432 0.94502 0.98846 0.99645 1.21375 1.00835 0.92523 1.00937 1.21265 0.93806 0.99074 0.99791 1.19402 0.93841 0.94022 1.01236 1.20815 1.03682 0.96417 0.92310 1.21313 0.76336 0.79981 0.92352 1.90720 1.54862 1.52400 1.48358 1.48373 1.56048 1.22622 1.07477 1.22029 1.02311 0.87552 0.89481 1.21838 1.01976 0.97262 0.94566 1.22510 0.98099 0.82030 0.95182 0.92479 1.87749 1.75886 1.28458 1.38986 1.23163 0.97422 0.98298 0.83627 1.21300 0.96561 0.83207 0.96834 1.44352 1.70117 1.05465 1.13250 1.19474 1.25207 1.07484 0.86849 0.90867 1.25830 0.99201 1.00438 0.98862 1.70179 1.35087 1.39527 1.13343 0.85236 0.78529 0.77999 0.78904 1.18983 1.22359 1.20930 1.21450 0.94841 0.93725 0.87314 0.98073 1.21204 0.99428 0.94708 0.82994 0.92987 0.89921 0.89790 0.84567 0.84150 0.84514 0.85415 0.85243 0.84547 0.84913 0.88832 0.86573 0.91515 0.93110 0.87328 0.91226 0.98746 0.93984 0.91192 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.60 71.24 0.68 -1.48 16 2 C -0.09 -1.97 5.88 -19.87 -0.12 -2.09 16 3 C -0.14 -2.88 9.70 22.27 0.22 -2.66 16 4 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 5 C -0.14 -2.96 10.05 22.27 0.22 -2.73 16 6 C -0.12 -2.81 9.68 22.27 0.22 -2.60 16 7 C -0.08 -1.98 4.37 -19.87 -0.09 -2.07 16 8 C -0.09 -1.77 3.67 29.10 0.11 -1.66 16 9 C 0.51 15.43 7.69 87.66 0.67 16.10 16 10 O -0.58 -24.44 15.43 -3.03 -0.05 -24.49 16 11 N -0.61 -17.78 2.99 -819.61 -2.45 -20.23 16 12 C 0.11 1.92 6.29 86.28 0.54 2.46 16 13 C -0.12 -2.63 5.81 30.49 0.18 -2.46 16 14 C 0.08 2.73 2.47 30.66 0.08 2.81 16 15 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 16 O -0.39 -14.54 10.49 -148.98 -1.56 -16.10 16 17 C 0.05 2.01 6.96 72.05 0.50 2.51 16 18 C 0.15 7.26 5.42 86.28 0.47 7.73 16 19 N -0.61 -31.29 3.04 -673.95 -2.05 -33.34 16 20 C -0.26 -14.48 8.87 84.03 0.75 -13.73 16 21 H 0.07 3.97 6.27 -2.91 -0.02 3.95 16 22 C -0.05 -2.71 4.99 84.86 0.42 -2.29 16 23 N -0.94 -56.36 11.16 21.65 0.24 -56.12 16 24 Si 0.97 45.81 29.58 68.60 2.03 47.84 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 28 C 0.13 5.80 3.03 45.04 0.14 5.94 16 29 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 30 C 0.14 5.59 4.49 86.24 0.39 5.98 16 31 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.08 1.20 6.03 -2.39 -0.01 1.18 16 33 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 34 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.13 1.72 7.56 -2.39 -0.02 1.70 16 39 H 0.14 1.65 5.99 -2.39 -0.01 1.63 16 40 H 0.13 1.22 5.91 -2.39 -0.01 1.21 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 46 H 0.07 3.78 6.23 -2.39 -0.01 3.76 16 47 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.07 2.77 7.37 -2.39 -0.02 2.75 16 50 H 0.05 2.70 6.80 -2.38 -0.02 2.68 16 Total: -1.00 -79.03 387.07 2.69 -76.33 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.93 Total: 18.69 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.60 Total: 7.43 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -4.26 Total: -109.69 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.61 Total: -40.59 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -79.03 2.69 -76.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074403177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.182 kcal (2) G-P(sol) polarization free energy of solvation -79.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds