Wall clock time and date at job start Wed Apr 1 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38263 * 120.00452 * 2 1 4 4 C 1.38205 * 120.00167 * 180.23023 * 3 2 1 5 5 C 1.38252 * 120.00269 * 359.81671 * 4 3 2 6 6 C 1.38210 * 120.00194 * 359.97404 * 5 4 3 7 7 C 1.38212 * 120.00090 * 179.79216 * 2 1 3 8 8 C 1.50703 * 120.00144 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.46947 * 84.72324 * 8 7 2 10 10 O 1.21286 * 120.00312 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99895 * 179.97438 * 9 8 7 12 12 C 1.46982 * 120.71731 * 0.02562 * 11 9 8 13 13 C 1.53159 * 108.44821 * 125.43919 * 12 11 9 14 14 C 1.52507 * 109.79069 * 54.51920 * 13 12 11 15 15 H 1.09007 * 108.93255 * 180.32854 * 14 13 12 16 16 O 1.42692 * 110.62429 * 60.62725 * 14 13 12 17 17 C 1.43212 * 113.79110 * 173.94661 * 16 14 13 18 18 C 1.53231 * 108.92181 * 62.68772 * 17 16 14 19 19 N 1.47180 * 108.69275 * 308.09177 * 18 17 16 20 20 C 1.36932 * 121.22414 * 230.93008 * 19 18 17 21 21 H 1.08003 * 119.99856 * 153.53472 * 20 19 18 22 22 C 1.38809 * 120.00394 * 333.54115 * 20 19 18 23 23 N 1.31622 * 119.99737 * 343.46377 * 22 20 19 24 24 Si 1.86800 * 120.00200 * 163.47471 * 22 20 19 25 25 H 1.48489 * 109.47313 * 59.99360 * 24 22 20 26 26 H 1.48499 * 109.47005 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46793 * 299.99506 * 24 22 20 28 28 C 1.47597 * 117.54820 * 50.95147 * 19 18 17 29 29 H 1.08995 * 110.31690 * 187.68310 * 28 19 18 30 30 C 1.46788 * 120.71880 * 179.72015 * 11 9 8 31 31 H 1.08999 * 109.47323 * 270.20885 * 1 2 3 32 32 H 1.08993 * 109.47218 * 30.20878 * 1 2 3 33 33 H 1.08998 * 109.46920 * 150.20769 * 1 2 3 34 34 H 1.08008 * 119.99569 * 0.06568 * 3 2 1 35 35 H 1.08002 * 119.99617 * 179.83151 * 4 3 2 36 36 H 1.08003 * 120.00210 * 179.97438 * 5 4 3 37 37 H 1.08000 * 120.00751 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47012 * 204.72618 * 8 7 2 39 39 H 1.08996 * 109.46671 * 324.72677 * 8 7 2 40 40 H 1.09007 * 109.63826 * 245.12403 * 12 11 9 41 41 H 1.08998 * 109.64410 * 5.53550 * 12 11 9 42 42 H 1.08994 * 109.41378 * 174.61863 * 13 12 11 43 43 H 1.08999 * 109.41223 * 294.42301 * 13 12 11 44 44 H 1.09001 * 110.00461 * 302.69382 * 17 16 14 45 45 H 1.09000 * 109.47335 * 182.35825 * 17 16 14 46 46 H 1.08996 * 109.60056 * 188.33297 * 18 17 16 47 47 H 1.08991 * 109.73001 * 67.92772 * 18 17 16 48 48 H 0.97001 * 119.99886 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.52085 * 354.21974 * 30 11 9 50 50 H 1.08998 * 109.51959 * 114.40213 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 0.0000 -0.0058 6 6 3.5807 -1.1970 -0.0014 7 6 2.1980 -1.1969 0.0043 8 6 1.4446 -2.5021 0.0097 9 6 1.0797 -2.8772 -1.4036 10 8 1.4004 -2.1560 -2.3245 11 7 0.3980 -4.0146 -1.6442 12 6 0.0019 -4.9005 -0.5402 13 6 -1.5105 -5.1285 -0.6205 14 6 -1.8815 -5.6486 -2.0052 15 1 -2.9600 -5.8003 -2.0488 16 8 -1.2285 -6.8900 -2.2674 17 6 -1.6347 -7.5088 -3.4935 18 6 -1.2548 -6.5931 -4.6619 19 7 -1.7825 -5.2452 -4.3956 20 6 -2.5282 -4.5775 -5.3300 21 1 -3.2445 -3.8322 -5.0171 22 6 -2.3638 -4.8585 -6.6793 23 7 -1.2945 -5.5062 -7.0911 24 14 -3.6599 -4.3173 -7.9109 25 1 -3.7984 -2.8396 -7.8665 26 1 -3.2505 -4.7350 -9.2759 27 1 -4.9607 -4.9470 -7.5693 28 6 -1.4777 -4.6395 -3.0846 29 1 -2.0322 -3.7095 -2.9593 30 6 0.0291 -4.3923 -3.0139 31 1 -0.3634 0.0037 1.0276 32 1 -0.3633 0.8880 -0.5170 33 1 -0.3633 -0.8918 -0.5106 34 1 1.6583 2.1327 0.0011 35 1 4.1204 2.1326 -0.0076 36 1 5.3517 -0.0001 -0.0100 37 1 4.1206 -2.1323 -0.0026 38 1 2.0715 -3.2818 0.4423 39 1 0.5366 -2.3949 0.6030 40 1 0.5216 -5.8543 -0.6314 41 1 0.2554 -4.4348 0.4122 42 1 -1.8072 -5.8586 0.1324 43 1 -2.0290 -4.1877 -0.4358 44 1 -2.7131 -7.6674 -3.4917 45 1 -1.1267 -8.4670 -3.6027 46 1 -1.6874 -6.9793 -5.5847 47 1 -0.1700 -6.5488 -4.7570 48 1 -1.1797 -5.7030 -8.0340 49 1 0.2971 -3.5874 -3.6983 50 1 0.5583 -5.3026 -3.2957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074403178.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:28 Heat of formation + Delta-G solvation = -45.069057 kcal Electronic energy + Delta-G solvation = -31469.220043 eV Core-core repulsion = 27461.156312 eV Total energy + Delta-G solvation = -4008.063731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.65441 -40.60464 -39.53819 -37.09617 -36.44163 -34.33787 -33.53062 -33.12943 -32.90218 -31.12499 -29.61489 -28.69472 -27.55330 -25.93566 -25.61383 -24.39724 -23.05879 -22.88904 -21.99293 -20.68651 -19.60227 -18.90454 -18.21960 -17.40330 -17.16344 -17.02743 -16.83303 -16.67609 -16.24528 -16.14931 -15.79619 -15.51702 -15.24402 -14.94881 -14.80596 -14.36178 -14.29252 -14.04920 -13.94638 -13.82582 -13.67537 -13.36836 -13.19705 -13.08584 -12.90806 -12.82722 -12.82036 -12.61024 -12.42289 -12.23615 -12.16081 -11.87153 -11.82006 -11.78008 -11.64739 -11.22340 -10.85909 -10.75235 -10.51808 -9.66609 -9.66153 -9.43258 -8.71797 -7.94260 -5.41932 0.44312 0.53348 1.42933 1.44194 1.51598 1.67404 2.03390 2.45159 2.87210 2.91914 3.20311 3.45484 3.63900 3.76176 3.92157 3.95831 4.02373 4.10992 4.17458 4.19995 4.22344 4.28971 4.37415 4.43727 4.45889 4.52793 4.55844 4.60102 4.65285 4.72044 4.81094 4.82923 4.85316 4.87184 4.92905 4.96018 4.99990 5.07088 5.20080 5.25028 5.31756 5.32434 5.48593 5.57152 5.58609 5.60724 5.64216 5.75534 6.17253 6.24846 6.35329 6.53705 7.02662 7.24804 7.70043 8.24260 9.10366 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.003171 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.744467 B = 8826.887882 C = 9952.666095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.126 4.126 5 C -0.138 4.138 6 C -0.120 4.120 7 C -0.085 4.085 8 C -0.090 4.090 9 C 0.507 3.493 10 O -0.589 6.589 11 N -0.606 5.606 12 C 0.107 3.893 13 C -0.116 4.116 14 C 0.085 3.915 15 H 0.050 0.950 16 O -0.382 6.382 17 C 0.053 3.947 18 C 0.144 3.856 19 N -0.603 5.603 20 C -0.268 4.268 21 H 0.066 0.934 22 C -0.046 4.046 23 N -0.932 5.932 24 Si 0.970 3.030 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.272 1.272 28 C 0.132 3.868 29 H 0.060 0.940 30 C 0.127 3.873 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.075 0.925 41 H 0.127 0.873 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.048 0.952 45 H 0.108 0.892 46 H 0.065 0.935 47 H -0.001 1.001 48 H 0.252 0.748 49 H 0.037 0.963 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 4.273 22.418 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.154 4.154 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.138 4.138 7 C -0.085 4.085 8 C -0.129 4.129 9 C 0.297 3.703 10 O -0.470 6.470 11 N -0.339 5.339 12 C -0.014 4.014 13 C -0.154 4.154 14 C 0.025 3.975 15 H 0.068 0.932 16 O -0.301 6.301 17 C -0.025 4.025 18 C 0.019 3.981 19 N -0.326 5.326 20 C -0.398 4.398 21 H 0.084 0.916 22 C -0.242 4.242 23 N -0.577 5.577 24 Si 0.797 3.203 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.198 1.198 28 C 0.024 3.976 29 H 0.079 0.921 30 C 0.002 3.998 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.145 0.855 42 H 0.132 0.868 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.126 0.874 46 H 0.084 0.916 47 H 0.017 0.983 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.705 4.508 21.871 22.821 hybrid contribution -0.491 0.356 -2.152 2.236 sum 4.214 4.864 19.719 20.742 Atomic orbital electron populations 1.20830 0.90617 1.02430 1.03207 1.20027 0.96839 0.93067 0.98742 1.21283 0.94910 0.97822 1.01398 1.21432 0.94382 0.98948 0.99629 1.21381 1.00884 0.92421 1.00888 1.21269 0.93632 0.99172 0.99733 1.19426 0.93967 0.93894 1.01244 1.20772 1.03413 0.96452 0.92306 1.21320 0.76908 0.79753 0.92289 1.90713 1.55628 1.52413 1.48204 1.48345 1.55104 1.22638 1.07835 1.22018 0.95203 0.94603 0.89577 1.21861 0.96471 1.02900 0.94185 1.22306 0.95722 0.84296 0.95155 0.93194 1.87762 1.66918 1.35432 1.39990 1.23168 0.99194 0.96063 0.84065 1.21297 0.95063 0.84760 0.96989 1.44537 1.60762 1.13882 1.13454 1.19431 1.13502 1.20001 0.86885 0.91611 1.25813 0.98586 1.00972 0.98785 1.70175 1.26988 1.45804 1.14734 0.85314 0.79147 0.78055 0.77762 1.20590 1.21834 1.19782 1.21669 0.92773 0.95892 0.87266 0.92146 1.21546 0.97138 0.98135 0.83001 0.88538 0.91586 0.93084 0.84709 0.84087 0.84279 0.85165 0.85229 0.85100 0.90617 0.85497 0.86827 0.88872 0.93377 0.87417 0.91626 0.98288 0.93926 0.94471 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 9.22 71.23 0.66 -1.72 16 2 C -0.09 -2.10 5.88 -19.87 -0.12 -2.21 16 3 C -0.14 -3.02 9.70 22.27 0.22 -2.80 16 4 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 5 C -0.14 -2.91 10.05 22.27 0.22 -2.69 16 6 C -0.12 -2.78 9.68 22.27 0.22 -2.56 16 7 C -0.08 -2.06 4.37 -19.86 -0.09 -2.15 16 8 C -0.09 -1.84 3.50 29.10 0.10 -1.74 16 9 C 0.51 16.26 6.90 87.66 0.60 16.86 16 10 O -0.59 -25.78 15.45 -3.05 -0.05 -25.83 16 11 N -0.61 -19.02 2.97 -819.80 -2.43 -21.45 16 12 C 0.11 2.21 6.17 86.34 0.53 2.75 16 13 C -0.12 -2.44 5.82 30.48 0.18 -2.26 16 14 C 0.08 2.75 2.76 30.49 0.08 2.83 16 15 H 0.05 1.67 8.11 -2.38 -0.02 1.65 16 16 O -0.38 -13.15 9.50 -148.98 -1.42 -14.57 16 17 C 0.05 1.96 6.99 72.06 0.50 2.46 16 18 C 0.14 6.97 4.92 86.33 0.42 7.40 16 19 N -0.60 -30.61 2.71 -673.20 -1.83 -32.44 16 20 C -0.27 -15.03 9.69 84.03 0.81 -14.22 16 21 H 0.07 3.62 7.88 -2.91 -0.02 3.59 16 22 C -0.05 -2.58 4.96 84.86 0.42 -2.16 16 23 N -0.93 -55.79 11.14 21.65 0.24 -55.55 16 24 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 C 0.13 5.54 3.01 44.80 0.13 5.67 16 29 H 0.06 2.64 7.99 -2.39 -0.02 2.63 16 30 C 0.13 5.44 5.60 86.28 0.48 5.92 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 33 H 0.05 1.22 6.15 -2.39 -0.01 1.21 16 34 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.13 1.85 7.84 -2.39 -0.02 1.83 16 39 H 0.13 1.88 6.58 -2.39 -0.02 1.86 16 40 H 0.08 1.64 7.93 -2.38 -0.02 1.62 16 41 H 0.13 1.46 5.94 -2.39 -0.01 1.44 16 42 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 45 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 46 H 0.07 3.53 6.14 -2.39 -0.01 3.52 16 47 H 0.00 -0.05 7.17 -2.39 -0.02 -0.07 16 48 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 49 H 0.04 1.94 7.00 -2.39 -0.02 1.92 16 50 H 0.05 2.14 6.52 -2.39 -0.02 2.12 16 Total: -1.00 -77.48 386.52 3.10 -74.38 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.93 Total: 20.90 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.61 Total: 7.00 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -4.02 Total: -109.44 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -1.46 Total: -40.39 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -77.48 3.10 -74.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074403178.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.311 kcal (2) G-P(sol) polarization free energy of solvation -77.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds