Wall clock time and date at job start Wed Apr 1 2020 02:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35900 * 117.00061 * 2 1 4 4 C 1.38751 * 120.05378 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94023 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05889 * 0.02797 * 5 4 3 7 7 C 1.50698 * 119.94343 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47173 * 264.99813 * 7 6 5 9 9 O 1.21283 * 120.00346 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99987 * 180.02562 * 8 7 6 11 11 C 1.47399 * 125.58618 * 0.02562 * 10 8 7 12 12 C 1.54866 * 104.81972 * 204.40251 * 11 10 8 13 13 C 1.55174 * 101.73017 * 322.77511 * 12 11 10 14 14 H 1.09001 * 113.25785 * 158.11663 * 13 12 11 15 15 C 1.53752 * 108.30916 * 285.38135 * 13 12 11 16 16 N 1.46384 * 108.45442 * 123.93974 * 15 13 12 17 17 C 1.36928 * 125.49695 * 181.42195 * 16 15 13 18 18 H 1.07995 * 120.00450 * 0.31559 * 17 16 15 19 19 C 1.38822 * 120.00193 * 180.31680 * 17 16 15 20 20 N 1.31613 * 119.99620 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00035 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47241 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46916 * 120.00169 * 21 19 17 24 24 H 1.48501 * 109.47043 * 239.99835 * 21 19 17 25 25 C 1.46720 * 109.18848 * 1.71901 * 16 15 13 26 26 C 1.46702 * 125.58703 * 179.71948 * 10 8 7 27 27 H 1.09009 * 111.53348 * 56.10325 * 26 10 8 28 28 C 1.38251 * 120.10814 * 0.25004 * 6 5 4 29 29 C 1.50700 * 119.96678 * 179.70820 * 28 6 5 30 30 C 1.38167 * 120.05548 * 359.44778 * 28 6 5 31 31 H 1.09001 * 109.47124 * 60.00503 * 1 2 3 32 32 H 1.09001 * 109.47293 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47630 * 300.00301 * 1 2 3 34 34 H 1.07992 * 120.03171 * 0.04956 * 4 3 2 35 35 H 1.08003 * 119.96573 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.46533 * 145.00163 * 7 6 5 37 37 H 1.09003 * 109.47243 * 25.00444 * 7 6 5 38 38 H 1.09000 * 110.37385 * 323.23516 * 11 10 8 39 39 H 1.09003 * 110.37026 * 85.45937 * 11 10 8 40 40 H 1.08994 * 110.97301 * 80.88265 * 12 11 10 41 41 H 1.08994 * 110.97566 * 204.66711 * 12 11 10 42 42 H 1.09002 * 109.74416 * 244.04700 * 15 13 12 43 43 H 1.08996 * 109.75123 * 4.70443 * 15 13 12 44 44 H 0.97000 * 119.99965 * 179.97438 * 20 19 17 45 45 H 1.09005 * 109.98142 * 222.44020 * 25 16 15 46 46 H 1.09000 * 109.98852 * 101.13408 * 25 16 15 47 47 H 1.08994 * 109.47536 * 89.99602 * 29 28 6 48 48 H 1.09006 * 109.46555 * 209.99738 * 29 28 6 49 49 H 1.09006 * 109.47374 * 329.99076 * 29 28 6 50 50 H 1.08001 * 120.02278 * 180.25220 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0017 7 6 3.9860 5.0185 -0.0028 8 6 4.3239 5.4089 -1.4185 9 8 4.0370 4.6699 -2.3364 10 7 4.9450 6.5795 -1.6649 11 6 5.3493 7.5667 -0.6477 12 6 5.4139 8.9146 -1.4075 13 6 5.9806 8.4743 -2.7833 14 1 5.7597 9.1788 -3.5852 15 6 7.4792 8.1747 -2.6149 16 7 7.7317 6.8055 -3.0670 17 6 8.9451 6.1714 -3.0434 18 1 9.8156 6.6851 -2.6631 19 6 9.0564 4.8681 -3.5085 20 7 7.9954 4.2419 -3.9716 21 14 10.7115 4.0029 -3.4756 22 1 11.7369 4.9170 -2.9117 23 1 10.6163 2.7843 -2.6322 24 1 11.0971 3.6194 -4.8575 25 6 6.4785 6.2207 -3.5572 26 6 5.3350 7.0770 -2.9887 27 1 4.4816 7.1260 -3.6651 28 6 4.0559 2.5170 -0.0069 29 6 5.5607 2.5982 -0.0142 30 6 3.4310 1.2848 -0.0001 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.2128 2.3204 -0.0001 35 1 1.3339 4.5114 -0.0019 36 1 4.9013 4.9604 0.5863 37 1 3.3213 5.7654 0.4313 38 1 4.6074 7.6158 0.1494 39 1 6.3274 7.3121 -0.2395 40 1 4.4203 9.3494 -1.5159 41 1 6.0906 9.6101 -0.9113 42 1 8.0642 8.8763 -3.2097 43 1 7.7566 8.2624 -1.5645 44 1 8.0732 3.3314 -4.2969 45 1 6.3845 5.1931 -3.2059 46 1 6.4567 6.2458 -4.6467 47 1 5.9286 2.6164 1.0116 48 1 5.9688 1.7296 -0.5312 49 1 5.8732 3.5071 -0.5285 50 1 4.0206 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075827438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:51 Heat of formation + Delta-G solvation = -33.931234 kcal Electronic energy + Delta-G solvation = -31360.059389 eV Core-core repulsion = 27352.478630 eV Total energy + Delta-G solvation = -4007.580759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.68905 -41.07010 -39.56530 -38.37470 -36.43592 -34.04694 -33.58207 -33.08968 -32.33381 -30.69570 -29.47144 -28.05187 -27.49404 -27.12052 -26.50428 -23.89772 -23.19599 -22.58398 -21.67936 -20.84465 -19.77174 -18.89833 -18.67347 -18.07694 -17.53873 -17.10483 -16.84601 -16.62855 -16.44668 -15.91263 -15.66088 -15.44965 -15.04839 -14.81214 -14.64029 -14.47715 -14.28647 -14.20828 -13.99690 -13.75832 -13.34659 -13.21619 -13.07459 -13.02658 -12.98608 -12.86720 -12.84612 -12.66872 -12.41257 -12.30058 -12.04619 -11.84127 -11.82020 -11.78673 -11.70210 -11.52700 -11.36556 -10.80985 -10.64978 -9.73681 -9.48421 -9.02924 -8.84537 -7.77249 -5.20672 0.36881 0.42187 1.41808 1.43092 1.53627 1.79755 2.18835 2.36928 2.47612 2.78348 3.33882 3.47954 3.66887 3.72819 3.80262 3.82216 3.93757 4.03068 4.09172 4.16667 4.28929 4.31302 4.34005 4.39880 4.42413 4.53090 4.53431 4.56164 4.62311 4.68731 4.69720 4.73461 4.80351 4.83442 4.92384 4.97910 5.00083 5.16934 5.18371 5.20842 5.31772 5.35784 5.38963 5.39455 5.49493 5.64008 5.69948 5.82301 5.91451 6.31564 6.46385 6.75970 7.10018 7.38206 7.81972 8.43485 9.24899 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.003628 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.785345 B = 7716.946771 C = 9507.463806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.118 3.882 4 C -0.214 4.214 5 C -0.066 4.066 6 C -0.115 4.115 7 C -0.081 4.081 8 C 0.519 3.481 9 O -0.580 6.580 10 N -0.604 5.604 11 C 0.094 3.906 12 C -0.105 4.105 13 C -0.099 4.099 14 H 0.117 0.883 15 C 0.136 3.864 16 N -0.618 5.618 17 C -0.235 4.235 18 H 0.086 0.914 19 C -0.068 4.068 20 N -0.945 5.945 21 Si 0.974 3.026 22 H -0.259 1.259 23 H -0.295 1.295 24 H -0.296 1.296 25 C 0.166 3.834 26 C 0.117 3.883 27 H 0.072 0.928 28 C -0.040 4.040 29 C -0.111 4.111 30 C -0.175 4.175 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.022 0.978 43 H 0.039 0.961 44 H 0.240 0.760 45 H 0.061 0.939 46 H -0.030 1.030 47 H 0.096 0.904 48 H 0.056 0.944 49 H 0.044 0.956 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.928 4.914 14.664 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.073 3.927 4 C -0.232 4.232 5 C -0.084 4.084 6 C -0.116 4.116 7 C -0.121 4.121 8 C 0.309 3.691 9 O -0.460 6.460 10 N -0.337 5.337 11 C -0.028 4.028 12 C -0.143 4.143 13 C -0.118 4.118 14 H 0.135 0.865 15 C 0.011 3.989 16 N -0.344 5.344 17 C -0.364 4.364 18 H 0.103 0.897 19 C -0.260 4.260 20 N -0.595 5.595 21 Si 0.802 3.198 22 H -0.183 1.183 23 H -0.222 1.222 24 H -0.224 1.224 25 C 0.039 3.961 26 C 0.012 3.988 27 H 0.090 0.910 28 C -0.041 4.041 29 C -0.168 4.168 30 C -0.194 4.194 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.089 0.911 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.125 0.875 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.079 0.921 46 H -0.012 1.012 47 H 0.114 0.886 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.935 4.100 14.175 21.718 hybrid contribution 1.120 -1.098 -1.037 1.880 sum -14.815 3.002 13.138 20.028 Atomic orbital electron populations 1.23346 0.76372 1.05546 1.02318 1.86029 1.23622 1.26820 1.88783 1.19083 0.92071 0.85033 0.96497 1.21410 1.01081 0.91552 1.09172 1.21066 0.93149 0.98317 0.95862 1.19287 0.94077 0.93469 1.04718 1.20601 1.03262 0.95792 0.92406 1.20849 0.76824 0.79291 0.92088 1.90718 1.55437 1.51485 1.48356 1.48425 1.57373 1.19560 1.08330 1.22602 1.00775 0.87760 0.91615 1.22827 1.03155 0.95760 0.92553 1.23079 0.93750 0.94303 1.00661 0.86473 1.21393 0.94472 0.85550 0.97466 1.44403 1.05179 1.11164 1.73618 1.19446 0.86740 0.95565 1.34698 0.89651 1.25665 1.00634 0.98169 1.01581 1.70250 1.28723 1.11829 1.48648 0.85070 0.79604 0.78369 0.76708 1.18341 1.22203 1.22374 1.21296 0.84122 0.97897 0.92751 1.22347 0.95793 0.94983 0.85673 0.90992 1.19638 0.95909 0.92478 0.96039 1.20757 0.91278 1.01968 1.02756 1.20337 0.92313 0.97920 1.08789 0.92180 0.86314 0.91106 0.82756 0.83179 0.87527 0.84485 0.86946 0.92612 0.88145 0.87299 0.95987 0.94299 0.95042 0.92084 1.01246 0.88583 0.92536 0.93712 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.71 10.50 -92.43 -0.97 -9.68 16 3 C 0.12 3.40 6.69 22.51 0.15 3.55 16 4 C -0.21 -5.22 9.04 22.37 0.20 -5.02 16 5 C -0.07 -1.67 9.67 22.26 0.22 -1.46 16 6 C -0.11 -3.44 4.37 -19.85 -0.09 -3.52 16 7 C -0.08 -2.19 4.14 29.10 0.12 -2.07 16 8 C 0.52 19.55 6.66 87.65 0.58 20.14 16 9 O -0.58 -28.41 15.76 -3.04 -0.05 -28.45 16 10 N -0.60 -20.92 3.01 -785.67 -2.36 -23.28 16 11 C 0.09 2.24 6.23 86.84 0.54 2.78 16 12 C -0.11 -2.06 6.31 31.98 0.20 -1.86 16 13 C -0.10 -2.97 4.27 -9.01 -0.04 -3.01 16 14 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 15 C 0.14 5.24 6.39 86.65 0.55 5.79 16 16 N -0.62 -32.26 3.37 -698.80 -2.36 -34.61 16 17 C -0.24 -13.45 10.25 84.04 0.86 -12.59 16 18 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 19 C -0.07 -4.02 5.48 84.87 0.47 -3.55 16 20 N -0.95 -61.03 10.17 21.65 0.22 -60.81 16 21 Si 0.97 47.69 29.55 68.60 2.03 49.72 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 25 C 0.17 8.92 5.17 86.59 0.45 9.37 16 26 C 0.12 4.64 3.65 45.99 0.17 4.81 16 27 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 28 C -0.04 -1.35 5.88 -19.88 -0.12 -1.46 16 29 C -0.11 -3.83 9.21 71.24 0.66 -3.17 16 30 C -0.17 -5.63 9.64 22.37 0.22 -5.41 16 31 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 34 H 0.15 2.69 6.30 -2.91 -0.02 2.67 16 35 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.11 2.71 7.00 -2.39 -0.02 2.69 16 37 H 0.14 2.40 7.75 -2.39 -0.02 2.38 16 38 H 0.11 1.71 7.46 -2.39 -0.02 1.69 16 39 H 0.06 1.53 7.49 -2.39 -0.02 1.51 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.11 1.64 7.96 -2.39 -0.02 1.62 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.04 1.40 6.78 -2.39 -0.02 1.38 16 44 H 0.24 15.35 8.31 -92.71 -0.77 14.57 16 45 H 0.06 3.87 5.31 -2.38 -0.01 3.86 16 46 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 47 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 48 H 0.06 2.03 8.09 -2.38 -0.02 2.01 16 49 H 0.04 1.82 6.14 -2.38 -0.01 1.81 16 50 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -85.62 391.41 3.70 -81.92 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.94 Total: 20.50 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 6.25 Total: 4.70 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -4.50 Total: -118.71 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.02 Total: -38.13 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -85.62 3.70 -81.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075827438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.989 kcal (2) G-P(sol) polarization free energy of solvation -85.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds