Wall clock time and date at job start Wed Apr 1 2020 02:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99608 * 2 1 4 4 C 1.38760 * 120.05856 * 0.21644 * 3 2 1 5 5 C 1.38121 * 119.93939 * 180.22964 * 4 3 2 6 6 C 1.38278 * 120.06191 * 359.80889 * 5 4 3 7 7 C 1.50701 * 119.94629 * 179.97438 * 6 5 4 8 8 C 1.38248 * 120.11171 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.05413 * 359.97438 * 8 6 5 10 10 C 1.50699 * 120.02902 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.47068 * 264.99947 * 10 9 8 12 12 O 1.21280 * 119.99930 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00195 * 179.97438 * 11 10 9 14 14 C 1.47414 * 125.58612 * 0.02562 * 13 11 10 15 15 C 1.53762 * 105.10260 * 203.82789 * 14 13 11 16 16 C 1.55171 * 102.23937 * 323.64956 * 15 14 13 17 17 H 1.09001 * 113.90349 * 157.57001 * 16 15 14 18 18 C 1.53754 * 108.31119 * 284.48393 * 16 15 14 19 19 N 1.46587 * 108.10917 * 124.37812 * 18 16 15 20 20 C 1.36935 * 125.31116 * 181.24510 * 19 18 16 21 21 H 1.08002 * 119.99932 * 9.48344 * 20 19 18 22 22 C 1.38817 * 119.99893 * 189.75601 * 20 19 18 23 23 N 1.31611 * 119.99693 * 8.54342 * 22 20 19 24 24 Si 1.86801 * 119.99791 * 188.53911 * 22 20 19 25 25 H 1.48501 * 109.47041 * 94.40746 * 24 22 20 26 26 H 1.48503 * 109.46860 * 214.40783 * 24 22 20 27 27 H 1.48497 * 109.47241 * 334.40481 * 24 22 20 28 28 C 1.46714 * 109.37811 * 1.50798 * 19 18 16 29 29 C 1.46703 * 125.58991 * 179.97438 * 13 11 10 30 30 H 1.09006 * 111.52986 * 56.12649 * 29 13 11 31 31 H 1.09001 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47520 * 299.99635 * 1 2 3 33 33 H 1.08996 * 109.47449 * 59.99743 * 1 2 3 34 34 H 1.07999 * 120.02635 * 0.02562 * 4 3 2 35 35 H 1.08005 * 119.96609 * 179.79130 * 5 4 3 36 36 H 1.09003 * 109.47136 * 270.02095 * 7 6 5 37 37 H 1.09001 * 109.47383 * 30.01902 * 7 6 5 38 38 H 1.08996 * 109.47457 * 150.02104 * 7 6 5 39 39 H 1.08003 * 119.97209 * 180.02562 * 8 6 5 40 40 H 1.09000 * 109.47436 * 145.00050 * 10 9 8 41 41 H 1.09003 * 109.46947 * 25.00003 * 10 9 8 42 42 H 1.08996 * 110.36662 * 323.21236 * 14 13 11 43 43 H 1.08995 * 110.36639 * 85.43124 * 14 13 11 44 44 H 1.09001 * 111.50593 * 205.01606 * 15 14 13 45 45 H 1.09002 * 109.95985 * 81.58643 * 15 14 13 46 46 H 1.08996 * 109.74314 * 4.70160 * 18 16 15 47 47 H 1.09002 * 109.74053 * 244.04477 * 18 16 15 48 48 H 0.97006 * 119.99880 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.98913 * 101.17745 * 28 19 18 50 50 H 1.09000 * 109.98634 * 222.48733 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0045 5 6 1.9208 3.6048 -0.0003 6 6 3.3017 3.6759 -0.0056 7 6 3.9858 5.0186 -0.0114 8 6 4.0559 2.5172 -0.0056 9 6 3.4311 1.2849 0.0003 10 6 4.2537 0.0223 0.0008 11 6 4.4189 -0.4703 -1.4138 12 8 3.9183 0.1438 -2.3321 13 7 5.1237 -1.5927 -1.6586 14 6 5.7822 -2.4313 -0.6407 15 6 6.9006 -3.1708 -1.3933 16 6 6.2462 -3.4390 -2.7744 17 1 6.9635 -3.6019 -3.5789 18 6 5.2406 -4.5914 -2.6169 19 7 3.9339 -4.1235 -3.0885 20 6 2.7799 -4.8607 -3.0828 21 1 2.7495 -5.8122 -2.5726 22 6 1.6509 -4.3878 -3.7375 23 7 1.7327 -3.3196 -4.5019 24 14 0.0158 -5.2676 -3.5335 25 1 -0.7623 -4.6206 -2.4467 26 1 -0.7496 -5.1905 -4.8038 27 1 0.2593 -6.6912 -3.1881 28 6 4.0567 -2.7443 -3.5735 29 6 5.3605 -2.1806 -2.9817 30 1 5.8291 -1.4663 -3.6588 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 -0.3634 0.5138 -0.8899 34 1 0.2127 2.3204 0.0085 35 1 1.3338 4.5114 -0.0002 36 1 4.1466 5.3400 -1.0405 37 1 3.3599 5.7476 0.5033 38 1 4.9458 4.9395 0.4987 39 1 5.1343 2.5753 -0.0094 40 1 3.7489 -0.7400 0.5943 41 1 5.2340 0.2275 0.4309 42 1 6.1974 -1.8095 0.1524 43 1 5.0756 -3.1508 -0.2271 44 1 7.1649 -4.1055 -0.8986 45 1 7.7723 -2.5241 -1.4935 46 1 5.1720 -4.8794 -1.5679 47 1 5.5629 -5.4454 -3.2127 48 1 0.9437 -2.9888 -4.9592 49 1 4.1042 -2.7351 -4.6624 50 1 3.2074 -2.1524 -3.2322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076005742.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:56 Heat of formation + Delta-G solvation = -14.592573 kcal Electronic energy + Delta-G solvation = -31633.251887 eV Core-core repulsion = 27626.509715 eV Total energy + Delta-G solvation = -4006.742172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.41705 -39.78521 -37.76176 -37.36361 -34.65944 -33.12486 -32.07284 -31.50965 -30.79679 -29.05337 -27.75020 -27.60839 -26.17001 -25.71779 -24.58181 -22.65852 -21.89593 -21.08992 -20.33662 -19.44235 -18.36131 -17.76929 -16.98369 -16.52792 -16.34357 -15.76905 -15.38065 -15.06643 -14.81808 -14.38517 -14.23215 -14.04721 -13.75910 -13.68939 -13.63245 -13.27803 -12.97634 -12.78277 -12.59620 -12.28814 -12.09016 -11.99547 -11.84055 -11.78019 -11.63320 -11.45263 -11.19040 -11.11957 -10.90156 -10.73758 -10.72043 -10.66448 -10.43566 -10.22192 -10.04877 -9.80889 -9.65308 -9.26840 -8.72041 -8.48291 -7.98497 -7.84115 -6.69362 -5.63638 -2.97945 1.40103 1.54435 3.24355 3.42798 3.47395 3.47700 3.50287 3.51066 3.90404 4.54641 4.73655 4.80354 4.83505 4.91543 4.92637 5.12930 5.16622 5.28444 5.28990 5.31491 5.37389 5.43687 5.54717 5.57667 5.58424 5.62904 5.65421 5.70589 5.72389 5.76388 5.84598 5.86888 5.90961 5.94342 6.09392 6.15336 6.31929 6.39591 6.42304 6.49848 6.59369 6.65954 6.67681 6.74485 6.90145 6.96079 7.57121 7.66064 7.68962 7.95149 8.15085 8.38732 8.81623 9.29337 9.91869 10.57175 11.47665 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.004205 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.261765 B = 6657.646317 C = 8530.822714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.306 6.306 3 C 0.145 3.855 4 C -0.207 4.207 5 C -0.082 4.082 6 C -0.130 4.130 7 C -0.105 4.105 8 C -0.070 4.070 9 C -0.090 4.090 10 C -0.088 4.088 11 C 0.533 3.467 12 O -0.526 6.526 13 N -0.602 5.602 14 C 0.103 3.897 15 C -0.123 4.123 16 C -0.109 4.109 17 H 0.095 0.905 18 C 0.142 3.858 19 N -0.598 5.598 20 C -0.233 4.233 21 H 0.075 0.925 22 C -0.003 4.003 23 N -0.910 5.910 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.173 3.827 29 C 0.114 3.886 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.024 0.976 47 H 0.020 0.980 48 H 0.252 0.748 49 H 0.035 0.965 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.068 11.320 13.038 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.218 6.218 3 C 0.099 3.901 4 C -0.226 4.226 5 C -0.101 4.101 6 C -0.131 4.131 7 C -0.162 4.162 8 C -0.088 4.088 9 C -0.091 4.091 10 C -0.128 4.128 11 C 0.321 3.679 12 O -0.402 6.402 13 N -0.337 5.337 14 C -0.020 4.020 15 C -0.161 4.161 16 C -0.128 4.128 17 H 0.114 0.886 18 C 0.016 3.984 19 N -0.324 5.324 20 C -0.362 4.362 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.556 5.556 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.047 3.953 29 C 0.010 3.990 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.038 0.962 48 H 0.062 0.938 49 H 0.053 0.947 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.606 11.541 12.459 18.222 hybrid contribution -1.274 -0.474 -0.028 1.359 sum 5.332 11.067 12.431 17.477 Atomic orbital electron populations 1.23039 0.78416 1.04228 1.00760 1.86148 1.21314 1.26399 1.87962 1.18818 0.91745 0.84482 0.95028 1.21155 0.99874 0.92298 1.09226 1.20724 0.93887 0.96772 0.98681 1.19681 0.93608 0.95240 1.04539 1.20672 0.99989 0.93493 1.02037 1.20649 0.99347 0.90536 0.98270 1.18629 0.90340 0.94529 1.05628 1.20441 1.00458 0.96129 0.95726 1.19923 0.77786 0.79490 0.90704 1.90723 1.46774 1.56477 1.46220 1.48270 1.52706 1.24470 1.08205 1.22052 0.94694 0.93871 0.91392 1.22583 0.97126 1.00325 0.96101 1.23045 0.97090 0.95913 0.96802 0.88631 1.21165 0.86335 0.93861 0.96999 1.44158 1.03486 1.10881 1.73869 1.18952 0.87406 1.01901 1.27896 0.90754 1.24821 0.98355 0.98333 0.98540 1.69983 1.28124 1.24914 1.32608 0.86179 0.84248 0.78785 0.77003 1.21757 1.21800 1.20639 1.21302 0.92743 0.85208 0.96057 1.22615 0.98861 0.93164 0.84338 0.90648 0.88109 0.93085 0.92620 0.85606 0.86175 0.91566 0.92003 0.91887 0.85759 0.87988 0.88782 0.91376 0.91240 0.89976 0.91354 0.95866 0.96233 0.93759 0.94661 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.31 -5.44 9.64 -19.42 -0.19 -5.62 16 3 C 0.15 2.41 6.66 -39.21 -0.26 2.15 16 4 C -0.21 -2.93 9.04 -39.43 -0.36 -3.29 16 5 C -0.08 -1.04 9.69 -39.61 -0.38 -1.43 16 6 C -0.13 -1.64 5.88 -104.60 -0.62 -2.25 16 7 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 8 C -0.07 -0.96 9.33 -39.60 -0.37 -1.33 16 9 C -0.09 -1.43 4.39 -104.47 -0.46 -1.89 16 10 C -0.09 -1.34 4.55 -29.03 -0.13 -1.47 16 11 C 0.53 10.50 7.50 -10.99 -0.08 10.42 16 12 O -0.53 -12.70 15.78 5.56 0.09 -12.61 16 13 N -0.60 -11.17 3.04 -162.87 -0.50 -11.67 16 14 C 0.10 1.48 6.22 -3.15 -0.02 1.46 16 15 C -0.12 -1.58 6.22 -25.19 -0.16 -1.74 16 16 C -0.11 -1.84 4.25 -87.87 -0.37 -2.21 16 17 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 18 C 0.14 2.94 6.44 -3.60 -0.02 2.91 16 19 N -0.60 -15.68 3.38 -171.99 -0.58 -16.26 16 20 C -0.23 -6.69 10.21 -15.06 -0.15 -6.84 16 21 H 0.07 2.06 7.84 -52.49 -0.41 1.65 16 22 C 0.00 -0.09 5.42 -17.43 -0.09 -0.19 16 23 N -0.91 -28.18 10.56 55.49 0.59 -27.60 16 24 Si 0.91 22.75 29.56 -169.99 -5.03 17.72 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 28 C 0.17 4.51 4.95 -3.46 -0.02 4.49 16 29 C 0.11 2.32 3.62 -66.15 -0.24 2.08 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 33 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 34 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 35 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 39 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.10 1.55 7.70 -51.93 -0.40 1.15 16 41 H 0.09 1.09 7.75 -51.93 -0.40 0.69 16 42 H 0.07 0.75 7.46 -51.93 -0.39 0.37 16 43 H 0.07 1.10 7.55 -51.93 -0.39 0.70 16 44 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.02 0.46 6.84 -51.93 -0.36 0.11 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.04 1.02 7.80 -51.93 -0.41 0.62 16 50 H 0.07 2.20 6.34 -51.93 -0.33 1.87 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -36.48 395.78 -10.01 -46.49 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.98 Total: 1.89 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.38 Total: 1.69 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.49 Total: -55.52 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.10 Total: -18.23 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.48 -10.01 -46.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076005742.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.900 kcal (2) G-P(sol) polarization free energy of solvation -36.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds