Wall clock time and date at job start Wed Apr 1 2020 02:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99608 * 2 1 4 4 C 1.38760 * 120.05856 * 0.21644 * 3 2 1 5 5 C 1.38121 * 119.93939 * 180.22964 * 4 3 2 6 6 C 1.38278 * 120.06191 * 359.80889 * 5 4 3 7 7 C 1.50701 * 119.94629 * 179.97438 * 6 5 4 8 8 C 1.38248 * 120.11171 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.05413 * 359.97438 * 8 6 5 10 10 C 1.50699 * 120.02902 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.47068 * 264.99947 * 10 9 8 12 12 O 1.21280 * 119.99930 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00195 * 179.97438 * 11 10 9 14 14 C 1.47414 * 125.58612 * 0.02562 * 13 11 10 15 15 C 1.53762 * 105.10260 * 203.82789 * 14 13 11 16 16 C 1.55171 * 102.23937 * 323.64956 * 15 14 13 17 17 H 1.09001 * 113.90349 * 157.57001 * 16 15 14 18 18 C 1.53754 * 108.31119 * 284.48393 * 16 15 14 19 19 N 1.46587 * 108.10917 * 124.37812 * 18 16 15 20 20 C 1.36935 * 125.31116 * 181.24510 * 19 18 16 21 21 H 1.08002 * 119.99932 * 9.48344 * 20 19 18 22 22 C 1.38817 * 119.99893 * 189.75601 * 20 19 18 23 23 N 1.31611 * 119.99693 * 8.54342 * 22 20 19 24 24 Si 1.86801 * 119.99791 * 188.53911 * 22 20 19 25 25 H 1.48501 * 109.47041 * 94.40746 * 24 22 20 26 26 H 1.48503 * 109.46860 * 214.40783 * 24 22 20 27 27 H 1.48497 * 109.47241 * 334.40481 * 24 22 20 28 28 C 1.46714 * 109.37811 * 1.50798 * 19 18 16 29 29 C 1.46703 * 125.58991 * 179.97438 * 13 11 10 30 30 H 1.09006 * 111.52986 * 56.12649 * 29 13 11 31 31 H 1.09001 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47520 * 299.99635 * 1 2 3 33 33 H 1.08996 * 109.47449 * 59.99743 * 1 2 3 34 34 H 1.07999 * 120.02635 * 0.02562 * 4 3 2 35 35 H 1.08005 * 119.96609 * 179.79130 * 5 4 3 36 36 H 1.09003 * 109.47136 * 270.02095 * 7 6 5 37 37 H 1.09001 * 109.47383 * 30.01902 * 7 6 5 38 38 H 1.08996 * 109.47457 * 150.02104 * 7 6 5 39 39 H 1.08003 * 119.97209 * 180.02562 * 8 6 5 40 40 H 1.09000 * 109.47436 * 145.00050 * 10 9 8 41 41 H 1.09003 * 109.46947 * 25.00003 * 10 9 8 42 42 H 1.08996 * 110.36662 * 323.21236 * 14 13 11 43 43 H 1.08995 * 110.36639 * 85.43124 * 14 13 11 44 44 H 1.09001 * 111.50593 * 205.01606 * 15 14 13 45 45 H 1.09002 * 109.95985 * 81.58643 * 15 14 13 46 46 H 1.08996 * 109.74314 * 4.70160 * 18 16 15 47 47 H 1.09002 * 109.74053 * 244.04477 * 18 16 15 48 48 H 0.97006 * 119.99880 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.98913 * 101.17745 * 28 19 18 50 50 H 1.09000 * 109.98634 * 222.48733 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0045 5 6 1.9208 3.6048 -0.0003 6 6 3.3017 3.6759 -0.0056 7 6 3.9858 5.0186 -0.0114 8 6 4.0559 2.5172 -0.0056 9 6 3.4311 1.2849 0.0003 10 6 4.2537 0.0223 0.0008 11 6 4.4189 -0.4703 -1.4138 12 8 3.9183 0.1438 -2.3321 13 7 5.1237 -1.5927 -1.6586 14 6 5.7822 -2.4313 -0.6407 15 6 6.9006 -3.1708 -1.3933 16 6 6.2462 -3.4390 -2.7744 17 1 6.9635 -3.6019 -3.5789 18 6 5.2406 -4.5914 -2.6169 19 7 3.9339 -4.1235 -3.0885 20 6 2.7799 -4.8607 -3.0828 21 1 2.7495 -5.8122 -2.5726 22 6 1.6509 -4.3878 -3.7375 23 7 1.7327 -3.3196 -4.5019 24 14 0.0158 -5.2676 -3.5335 25 1 -0.7623 -4.6206 -2.4467 26 1 -0.7496 -5.1905 -4.8038 27 1 0.2593 -6.6912 -3.1881 28 6 4.0567 -2.7443 -3.5735 29 6 5.3605 -2.1806 -2.9817 30 1 5.8291 -1.4663 -3.6588 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 -0.3634 0.5138 -0.8899 34 1 0.2127 2.3204 0.0085 35 1 1.3338 4.5114 -0.0002 36 1 4.1466 5.3400 -1.0405 37 1 3.3599 5.7476 0.5033 38 1 4.9458 4.9395 0.4987 39 1 5.1343 2.5753 -0.0094 40 1 3.7489 -0.7400 0.5943 41 1 5.2340 0.2275 0.4309 42 1 6.1974 -1.8095 0.1524 43 1 5.0756 -3.1508 -0.2271 44 1 7.1649 -4.1055 -0.8986 45 1 7.7723 -2.5241 -1.4935 46 1 5.1720 -4.8794 -1.5679 47 1 5.5629 -5.4454 -3.2127 48 1 0.9437 -2.9888 -4.9592 49 1 4.1042 -2.7351 -4.6624 50 1 3.2074 -2.1524 -3.2322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076005742.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:55 Heat of formation + Delta-G solvation = -38.234312 kcal Electronic energy + Delta-G solvation = -31634.277070 eV Core-core repulsion = 27626.509715 eV Total energy + Delta-G solvation = -4007.767355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.72613 -41.09193 -39.25377 -38.54340 -36.47923 -34.34862 -33.82425 -32.53222 -32.40764 -30.76461 -28.98490 -28.77055 -27.72835 -26.72214 -26.53227 -23.97058 -23.07587 -22.61504 -21.73391 -20.86550 -19.84254 -18.92813 -18.88516 -18.09894 -17.52822 -17.14207 -16.88302 -16.60957 -16.14142 -15.88335 -15.68280 -15.40098 -15.24060 -14.79195 -14.67798 -14.51918 -14.36714 -14.25698 -13.93643 -13.81471 -13.43828 -13.22407 -13.04572 -12.97514 -12.96119 -12.88432 -12.82419 -12.66132 -12.43978 -12.23907 -12.09319 -11.90620 -11.85501 -11.78654 -11.70549 -11.58721 -11.43483 -10.84931 -10.67545 -9.79896 -9.53026 -8.92646 -8.85665 -7.87774 -5.24675 0.34023 0.48217 1.37963 1.41144 1.50397 1.75299 2.16005 2.38085 2.45734 2.80876 3.29736 3.45111 3.64494 3.67038 3.80611 3.82885 3.95742 3.99602 4.05716 4.11832 4.25407 4.25838 4.31811 4.37943 4.43063 4.52442 4.53474 4.57000 4.58612 4.64963 4.74558 4.76701 4.78725 4.89364 4.91196 4.96780 5.11190 5.13935 5.19618 5.22391 5.32781 5.36578 5.40746 5.44754 5.45626 5.63989 5.67745 5.76096 5.91817 6.19077 6.45229 6.71191 7.05820 7.33112 7.77926 8.41389 9.22186 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.004205 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.261765 B = 6657.646317 C = 8530.822714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.341 6.341 3 C 0.110 3.890 4 C -0.217 4.217 5 C -0.087 4.087 6 C -0.132 4.132 7 C -0.103 4.103 8 C -0.077 4.077 9 C -0.115 4.115 10 C -0.075 4.075 11 C 0.522 3.478 12 O -0.585 6.585 13 N -0.604 5.604 14 C 0.095 3.905 15 C -0.105 4.105 16 C -0.096 4.096 17 H 0.119 0.881 18 C 0.135 3.865 19 N -0.618 5.618 20 C -0.242 4.242 21 H 0.084 0.916 22 C -0.067 4.067 23 N -0.948 5.948 24 Si 0.975 3.025 25 H -0.289 1.289 26 H -0.296 1.296 27 H -0.259 1.259 28 C 0.189 3.811 29 C 0.117 3.883 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.148 0.852 40 H 0.099 0.901 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.053 0.947 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.040 0.960 47 H 0.023 0.977 48 H 0.242 0.758 49 H -0.012 1.012 50 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.589 11.704 15.846 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.255 6.255 3 C 0.065 3.935 4 C -0.235 4.235 5 C -0.105 4.105 6 C -0.132 4.132 7 C -0.159 4.159 8 C -0.095 4.095 9 C -0.116 4.116 10 C -0.114 4.114 11 C 0.313 3.687 12 O -0.464 6.464 13 N -0.337 5.337 14 C -0.027 4.027 15 C -0.142 4.142 16 C -0.116 4.116 17 H 0.137 0.863 18 C 0.010 3.990 19 N -0.344 5.344 20 C -0.371 4.371 21 H 0.102 0.898 22 C -0.261 4.261 23 N -0.597 5.597 24 Si 0.803 3.197 25 H -0.217 1.217 26 H -0.223 1.223 27 H -0.184 1.184 28 C 0.063 3.937 29 C 0.012 3.988 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.165 0.835 40 H 0.117 0.883 41 H 0.156 0.844 42 H 0.131 0.869 43 H 0.071 0.929 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.058 0.942 47 H 0.041 0.959 48 H 0.051 0.949 49 H 0.006 0.994 50 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 9.182 11.876 15.325 21.452 hybrid contribution -2.065 -0.579 -0.924 2.335 sum 7.117 11.297 14.401 19.638 Atomic orbital electron populations 1.23162 0.77266 1.04420 1.01962 1.86071 1.22884 1.27861 1.88636 1.19224 0.92647 0.84706 0.96962 1.21428 1.00680 0.92358 1.09067 1.21142 0.94557 0.97168 0.97643 1.20164 0.93784 0.96557 1.02722 1.20734 1.00810 0.91768 1.02629 1.21001 1.00682 0.90125 0.97709 1.18931 0.90396 0.95606 1.06698 1.20422 1.02672 0.95843 0.92450 1.20835 0.76616 0.79279 0.92007 1.90685 1.48959 1.58447 1.48345 1.48417 1.52508 1.24374 1.08424 1.22399 0.94717 0.93942 0.91618 1.22627 0.96970 1.02139 0.92483 1.23076 0.96192 0.91665 1.00632 0.86276 1.21462 0.84644 0.95468 0.97411 1.44442 1.05244 1.10984 1.73697 1.19419 0.88628 1.02184 1.26916 0.89784 1.25737 1.02179 0.99360 0.98781 1.70259 1.28312 1.26978 1.34125 0.85113 0.79518 0.78621 0.76463 1.21653 1.22290 1.18351 1.20855 0.94011 0.85295 0.93558 1.22359 0.96171 0.94725 0.85556 0.90853 0.88470 0.89916 0.93296 0.84334 0.83313 0.91371 0.90203 0.90313 0.83477 0.88309 0.84415 0.86884 0.92903 0.86997 0.88114 0.94184 0.95887 0.94882 0.99441 0.96710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 9.81 113.37 1.11 1.89 16 2 O -0.34 -12.88 9.64 -92.40 -0.89 -13.77 16 3 C 0.11 3.78 6.66 22.51 0.15 3.93 16 4 C -0.22 -6.20 9.04 22.37 0.20 -6.00 16 5 C -0.09 -2.10 9.69 22.25 0.22 -1.88 16 6 C -0.13 -3.08 5.88 -19.85 -0.12 -3.19 16 7 C -0.10 -1.59 10.01 71.24 0.71 -0.88 16 8 C -0.08 -2.02 9.33 22.25 0.21 -1.81 16 9 C -0.12 -3.67 4.39 -19.77 -0.09 -3.76 16 10 C -0.07 -2.23 4.55 29.10 0.13 -2.10 16 11 C 0.52 21.02 7.50 87.66 0.66 21.68 16 12 O -0.58 -29.96 15.78 -3.03 -0.05 -30.01 16 13 N -0.60 -22.16 3.04 -787.60 -2.40 -24.56 16 14 C 0.09 2.41 6.22 86.46 0.54 2.94 16 15 C -0.10 -2.16 6.22 31.60 0.20 -1.96 16 16 C -0.10 -3.02 4.25 -9.01 -0.04 -3.06 16 17 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 18 C 0.13 5.40 6.44 86.62 0.56 5.95 16 19 N -0.62 -33.43 3.38 -698.04 -2.36 -35.79 16 20 C -0.24 -14.30 10.21 84.04 0.86 -13.44 16 21 H 0.08 4.67 7.84 -2.91 -0.02 4.65 16 22 C -0.07 -4.11 5.42 84.86 0.46 -3.65 16 23 N -0.95 -62.88 10.56 21.65 0.23 -62.65 16 24 Si 0.97 48.49 29.56 68.60 2.03 50.52 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 27 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 28 C 0.19 10.56 4.95 86.64 0.43 10.98 16 29 C 0.12 4.82 3.62 46.03 0.17 4.99 16 30 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 31 H 0.10 2.81 8.14 -2.39 -0.02 2.80 16 32 H 0.08 1.82 7.65 -2.39 -0.02 1.80 16 33 H 0.05 1.45 7.67 -2.39 -0.02 1.43 16 34 H 0.14 3.39 6.30 -2.91 -0.02 3.37 16 35 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 38 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 39 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.10 3.00 7.70 -2.39 -0.02 2.98 16 41 H 0.14 2.76 7.75 -2.39 -0.02 2.74 16 42 H 0.11 1.91 7.46 -2.39 -0.02 1.89 16 43 H 0.05 1.54 7.55 -2.39 -0.02 1.52 16 44 H 0.11 1.77 7.96 -2.39 -0.02 1.75 16 45 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.04 1.49 6.84 -2.39 -0.02 1.47 16 47 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.24 15.75 8.31 -92.70 -0.77 14.98 16 49 H -0.01 -0.78 7.80 -2.39 -0.02 -0.80 16 50 H 0.01 0.97 6.34 -2.39 -0.02 0.95 16 Total: -1.00 -89.57 395.78 3.85 -85.72 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.93 Total: 19.90 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 6.35 Total: 10.64 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -4.52 Total: -123.00 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.94 Total: -43.78 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -89.57 3.85 -85.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076005742.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.491 kcal (2) G-P(sol) polarization free energy of solvation -89.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds