Wall clock time and date at job start Wed Apr 1 2020 04:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00153 * 2 1 4 4 H 1.08996 * 110.78121 * 26.76040 * 3 2 1 5 5 C 1.54327 * 110.71937 * 263.52165 * 3 2 1 6 6 N 1.47022 * 107.26874 * 219.44554 * 5 3 2 7 7 C 1.36945 * 125.64784 * 178.89078 * 6 5 3 8 8 H 1.07997 * 119.99949 * 180.02562 * 7 6 5 9 9 C 1.38813 * 119.99471 * 0.02562 * 7 6 5 10 10 N 1.31614 * 120.00433 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99513 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46847 * 90.00315 * 11 9 7 13 13 H 1.48493 * 109.47014 * 210.00033 * 11 9 7 14 14 H 1.48499 * 109.47028 * 330.00454 * 11 9 7 15 15 C 1.47423 * 108.70473 * 358.93959 * 6 5 3 16 16 C 1.54902 * 104.83453 * 24.12725 * 15 6 5 17 17 H 1.09002 * 111.03814 * 81.08155 * 16 15 6 18 18 N 1.46501 * 111.00807 * 204.91629 * 16 15 6 19 19 C 1.34771 * 120.00033 * 267.19933 * 18 16 15 20 20 O 1.21277 * 120.00188 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99860 * 179.97438 * 19 18 16 22 22 H 1.08998 * 115.56280 * 34.31052 * 21 19 18 23 23 C 1.53077 * 117.49312 * 248.59910 * 21 19 18 24 24 C 1.52995 * 59.98321 * 252.51611 * 23 21 19 25 25 H 1.09003 * 117.49958 * 107.50307 * 24 23 21 26 26 C 1.50707 * 117.49567 * 252.49773 * 24 23 21 27 27 C 1.38258 * 119.99972 * 8.92241 * 26 24 23 28 28 C 1.38211 * 119.99774 * 180.23526 * 27 26 24 29 29 C 1.38256 * 120.00062 * 359.52161 * 28 27 26 30 30 C 1.38215 * 120.00141 * 0.28711 * 29 28 27 31 31 C 1.50700 * 120.00262 * 179.97438 * 30 29 28 32 32 C 1.38211 * 119.99804 * 188.74616 * 26 24 23 33 33 H 1.08994 * 109.47162 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46925 * 300.00847 * 1 2 3 35 35 H 1.09001 * 109.46776 * 59.99811 * 1 2 3 36 36 H 1.09003 * 109.87691 * 338.85973 * 5 3 2 37 37 H 1.08994 * 109.88696 * 99.87334 * 5 3 2 38 38 H 0.97007 * 120.00096 * 179.97438 * 10 9 7 39 39 H 1.09001 * 110.36469 * 265.28882 * 15 6 5 40 40 H 1.09003 * 110.36907 * 142.97098 * 15 6 5 41 41 H 0.97000 * 119.99514 * 87.19634 * 18 16 15 42 42 H 1.08994 * 117.51395 * 145.03074 * 23 21 19 43 43 H 1.09003 * 117.51103 * 359.97438 * 23 21 19 44 44 H 1.07998 * 119.99848 * 0.03483 * 27 26 24 45 45 H 1.08002 * 120.00200 * 179.80765 * 28 27 26 46 46 H 1.07999 * 120.00077 * 180.25932 * 29 28 27 47 47 H 1.08995 * 109.47498 * 89.99596 * 31 30 29 48 48 H 1.08999 * 109.46948 * 210.00258 * 31 30 29 49 49 H 1.09002 * 109.46468 * 329.99093 * 31 30 29 50 50 H 1.08002 * 120.00383 * 0.02562 * 32 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3364 2.0288 0.4588 5 6 2.3811 1.7379 -1.4342 6 7 3.6686 2.4437 -1.3581 7 6 4.3551 2.9688 -2.4204 8 1 5.2976 3.4708 -2.2594 9 6 3.8393 2.8556 -3.7042 10 7 2.6908 2.2434 -3.9005 11 14 4.7752 3.5724 -5.1532 12 1 5.6991 2.5472 -5.7017 13 1 3.8144 3.9872 -6.2067 14 1 5.5563 4.7525 -4.7031 15 6 4.0989 2.4916 0.0512 16 6 3.3817 1.2958 0.7257 17 1 3.9155 0.3638 0.5396 18 7 3.2168 1.5252 2.1632 19 6 4.1462 1.0739 3.0285 20 8 5.1189 0.4776 2.6173 21 6 3.9769 1.3104 4.5073 22 1 2.9498 1.2926 4.8718 23 6 4.9508 2.2781 5.1843 24 6 5.0663 0.7737 5.4378 25 1 5.9053 0.2491 4.9806 26 6 4.6372 0.2608 6.7884 27 6 3.9917 1.1031 7.6746 28 6 3.6026 0.6341 8.9151 29 6 3.8498 -0.6802 9.2659 30 6 4.4915 -1.5234 8.3784 31 6 4.7615 -2.9558 8.7610 32 6 4.8856 -1.0527 7.1396 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5140 0.8899 35 1 -0.3633 0.5139 -0.8900 36 1 2.4769 0.8599 -2.0731 37 1 1.6141 2.4030 -1.8309 38 1 2.3302 2.1647 -4.7976 39 1 3.7873 3.4294 0.5112 40 1 5.1803 2.3744 0.1219 41 1 2.4387 2.0018 2.4921 42 1 4.5645 2.8969 5.9941 43 1 5.7141 2.7430 4.5602 44 1 3.7946 2.1285 7.3988 45 1 3.1012 1.2929 9.6086 46 1 3.5420 -1.0479 10.2336 47 1 3.9187 -3.5776 8.4594 48 1 5.6657 -3.3014 8.2599 49 1 4.8958 -3.0243 9.8406 50 1 5.3876 -1.7114 6.4464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082224551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:42 Heat of formation + Delta-G solvation = -24.861002 kcal Electronic energy + Delta-G solvation = -29463.480391 eV Core-core repulsion = 25456.292947 eV Total energy + Delta-G solvation = -4007.187444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.44267 -40.48465 -39.66331 -37.66642 -37.31335 -35.61262 -33.70572 -33.35038 -31.75492 -30.60995 -29.04555 -27.74243 -27.54306 -26.45254 -25.09471 -24.39822 -22.96732 -22.30399 -22.01782 -21.26955 -20.49720 -19.16272 -18.59183 -17.85729 -17.59363 -17.21747 -16.59373 -16.31433 -16.05563 -15.86278 -15.80771 -15.69589 -15.31388 -15.05063 -14.87522 -14.61994 -14.44276 -14.10756 -14.01186 -13.64862 -13.56307 -13.24672 -13.16531 -13.02012 -12.99521 -12.77786 -12.76071 -12.61155 -12.33863 -12.19299 -12.08405 -11.88287 -11.84131 -11.66574 -11.57903 -11.41129 -11.01683 -10.79061 -10.60827 -10.11194 -9.63307 -9.39174 -8.98670 -7.88878 -5.27309 0.38788 0.50987 1.44303 1.46905 1.47467 1.55830 1.98346 2.45318 2.67206 2.75953 3.08777 3.30320 3.48307 3.51192 3.66497 3.79294 3.89827 3.90722 3.97215 4.03824 4.09480 4.15739 4.23328 4.27821 4.36451 4.43629 4.52764 4.56383 4.58345 4.63433 4.76011 4.79828 4.82516 4.85837 4.86119 4.96978 4.97815 5.03256 5.10306 5.19583 5.31390 5.33467 5.36413 5.44849 5.61526 5.64219 5.71286 5.75051 6.11802 6.15614 6.30165 6.52762 7.02955 7.22968 7.67994 8.30536 9.20601 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.002077 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.780810 B =13476.996120 C =14167.313376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.076 3.924 4 H 0.099 0.901 5 C 0.175 3.825 6 N -0.622 5.622 7 C -0.247 4.247 8 H 0.083 0.917 9 C -0.064 4.064 10 N -0.949 5.949 11 Si 0.982 3.018 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.267 1.267 15 C 0.132 3.868 16 C 0.149 3.851 17 H 0.071 0.929 18 N -0.696 5.696 19 C 0.539 3.461 20 O -0.586 6.586 21 C -0.172 4.172 22 H 0.152 0.848 23 C -0.124 4.124 24 C -0.092 4.092 25 H 0.100 0.900 26 C -0.058 4.058 27 C -0.129 4.129 28 C -0.116 4.116 29 C -0.132 4.132 30 C -0.095 4.095 31 C -0.115 4.115 32 C -0.133 4.133 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.016 0.984 37 H 0.024 0.976 38 H 0.249 0.751 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.417 0.583 42 H 0.141 0.859 43 H 0.097 0.903 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 -2.555 29.434 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.017 3.983 4 H 0.117 0.883 5 C 0.049 3.951 6 N -0.350 5.350 7 C -0.375 4.375 8 H 0.101 0.899 9 C -0.257 4.257 10 N -0.598 5.598 11 Si 0.810 3.190 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.191 1.191 15 C 0.006 3.994 16 C 0.042 3.958 17 H 0.090 0.910 18 N -0.347 5.347 19 C 0.327 3.673 20 O -0.466 6.466 21 C -0.193 4.193 22 H 0.170 0.830 23 C -0.161 4.161 24 C -0.111 4.111 25 H 0.118 0.882 26 C -0.058 4.058 27 C -0.147 4.147 28 C -0.134 4.134 29 C -0.150 4.150 30 C -0.095 4.095 31 C -0.172 4.172 32 C -0.151 4.151 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.255 0.745 42 H 0.159 0.841 43 H 0.115 0.885 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.158 0.842 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.141 -3.130 28.927 29.265 hybrid contribution 0.021 0.351 -1.604 1.642 sum -3.120 -2.778 27.323 27.641 Atomic orbital electron populations 1.22995 0.79270 1.03879 1.00827 1.87899 1.21841 1.27091 1.94931 1.23514 0.93647 0.85266 0.95885 0.88323 1.21283 0.87208 0.94674 0.91930 1.44533 1.21970 1.66437 1.02047 1.19451 1.02679 1.29551 0.85831 0.89872 1.25705 0.98480 1.01478 1.00054 1.70162 1.20534 1.48358 1.20705 0.85026 0.77279 0.78090 0.78599 1.21537 1.21641 1.19118 1.21922 0.97152 0.95772 0.84595 1.21835 0.95671 0.98327 0.79953 0.91043 1.45600 1.25899 1.58237 1.04940 1.20299 0.81538 0.77033 0.88395 1.90699 1.32227 1.43239 1.80446 1.22315 0.99629 1.09092 0.88236 0.83020 1.23282 0.99460 0.91367 1.01975 1.20974 0.99205 0.97958 0.92951 0.88162 1.19130 0.98926 0.94030 0.93668 1.21287 0.98920 1.00523 0.93950 1.21447 0.99302 0.96025 0.96589 1.21359 0.99410 0.94057 1.00179 1.20184 0.98063 0.97446 0.93816 1.20838 1.02296 0.91321 1.02716 1.21031 1.01797 0.95421 0.96876 0.88236 0.91612 0.94542 0.96615 0.95823 0.94185 0.93647 0.94779 0.74496 0.84127 0.88459 0.83803 0.83541 0.84212 0.90703 0.91613 0.90129 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.85 113.37 1.23 1.93 16 2 O -0.40 -14.72 10.43 -148.98 -1.55 -16.28 16 3 C 0.08 2.87 3.09 31.78 0.10 2.97 16 4 H 0.10 3.02 7.69 -2.39 -0.02 3.00 16 5 C 0.17 8.85 5.15 86.73 0.45 9.30 16 6 N -0.62 -33.15 3.39 -691.99 -2.35 -35.50 16 7 C -0.25 -14.23 10.28 84.03 0.86 -13.37 16 8 H 0.08 4.61 7.83 -2.91 -0.02 4.58 16 9 C -0.06 -3.71 5.49 84.86 0.47 -3.25 16 10 N -0.95 -57.78 10.31 21.65 0.22 -57.56 16 11 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 12 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 C 0.13 5.73 6.93 86.85 0.60 6.34 16 16 C 0.15 5.69 3.15 46.38 0.15 5.83 16 17 H 0.07 3.27 7.54 -2.39 -0.02 3.25 16 18 N -0.70 -19.53 5.20 -435.97 -2.27 -21.79 16 19 C 0.54 16.02 7.61 87.66 0.67 16.69 16 20 O -0.59 -23.40 15.90 -3.02 -0.05 -23.45 16 21 C -0.17 -3.41 5.82 -11.51 -0.07 -3.48 16 22 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 23 C -0.12 -2.00 9.57 30.62 0.29 -1.71 16 24 C -0.09 -1.91 5.55 -11.54 -0.06 -1.98 16 25 H 0.10 2.62 7.67 -2.39 -0.02 2.60 16 26 C -0.06 -1.07 5.61 -19.86 -0.11 -1.18 16 27 C -0.13 -1.83 9.29 22.27 0.21 -1.62 16 28 C -0.12 -1.45 10.05 22.27 0.22 -1.22 16 29 C -0.13 -1.79 9.70 22.27 0.22 -1.57 16 30 C -0.10 -1.55 5.88 -19.86 -0.12 -1.66 16 31 C -0.12 -1.38 10.01 71.24 0.71 -0.66 16 32 C -0.13 -2.62 9.39 22.27 0.21 -2.41 16 33 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 1.34 8.11 -2.39 -0.02 1.32 16 35 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.02 0.92 7.29 -2.39 -0.02 0.91 16 37 H 0.02 1.29 7.51 -2.39 -0.02 1.27 16 38 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.42 8.33 8.57 -92.71 -0.79 7.53 16 42 H 0.14 1.34 6.18 -2.39 -0.01 1.33 16 43 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.14 1.34 6.03 -2.91 -0.02 1.32 16 45 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 46 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.79 8.09 -2.39 -0.02 0.77 16 49 H 0.08 0.70 8.09 -2.39 -0.02 0.69 16 50 H 0.11 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -77.97 409.59 2.20 -75.77 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.15 Total: 21.28 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.02 Total: 8.93 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -4.39 Total: -114.85 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.60 Total: -39.73 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -77.97 2.20 -75.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082224551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.905 kcal (2) G-P(sol) polarization free energy of solvation -77.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds