Wall clock time and date at job start Wed Apr 1 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38234 * 119.99469 * 2 1 4 4 C 1.38235 * 119.99691 * 180.02562 * 3 2 1 5 5 C 1.38235 * 119.99853 * 359.97438 * 4 3 2 6 6 C 1.38235 * 120.00225 * 359.95567 * 5 4 3 7 7 C 1.50702 * 119.99989 * 180.02562 * 6 5 4 8 8 C 1.38227 * 119.99997 * 179.73258 * 2 1 3 9 9 C 1.50705 * 120.00338 * 359.97438 * 8 2 1 10 10 C 1.50697 * 109.47218 * 89.99788 * 9 8 2 11 11 O 1.21278 * 119.99903 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00168 * 180.02562 * 10 9 8 13 13 C 1.44966 * 117.33613 * 357.45968 * 12 10 9 14 14 C 1.51958 * 111.93846 * 203.73317 * 13 12 10 15 15 O 1.41329 * 111.60647 * 319.69227 * 14 13 12 16 16 C 1.40852 * 118.30331 * 56.90005 * 15 14 13 17 17 H 1.09007 * 109.53719 * 188.63236 * 16 15 14 18 18 C 1.53903 * 110.30430 * 68.00770 * 16 15 14 19 19 N 1.46777 * 107.62793 * 221.40519 * 18 16 15 20 20 C 1.36935 * 125.36628 * 178.78726 * 19 18 16 21 21 H 1.08000 * 120.00484 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99895 * 0.02642 * 20 19 18 23 23 N 1.31616 * 119.99908 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00069 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47125 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47180 * 119.99678 * 24 22 20 27 27 H 1.48502 * 109.47175 * 239.99874 * 24 22 20 28 28 C 1.46869 * 109.27339 * 358.80890 * 19 18 16 29 29 C 1.44541 * 117.34237 * 177.20084 * 12 10 9 30 30 H 1.08996 * 109.64085 * 286.47117 * 29 12 10 31 31 H 1.08993 * 109.46955 * 89.99699 * 1 2 3 32 32 H 1.08993 * 109.46957 * 329.99667 * 1 2 3 33 33 H 1.08998 * 109.46900 * 209.99542 * 1 2 3 34 34 H 1.07993 * 120.00213 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.00527 * 179.97438 * 4 3 2 36 36 H 1.08005 * 119.99871 * 179.97438 * 5 4 3 37 37 H 1.08992 * 109.46979 * 90.00487 * 7 6 5 38 38 H 1.09004 * 109.46795 * 210.00587 * 7 6 5 39 39 H 1.09001 * 109.47179 * 329.99815 * 7 6 5 40 40 H 1.08997 * 109.47199 * 210.00513 * 9 8 2 41 41 H 1.09004 * 109.46460 * 329.99831 * 9 8 2 42 42 H 1.09002 * 108.98779 * 324.36232 * 13 12 10 43 43 H 1.08995 * 108.98709 * 83.18219 * 13 12 10 44 44 H 1.09005 * 109.05599 * 80.24265 * 14 13 12 45 45 H 1.09003 * 109.05305 * 199.21962 * 14 13 12 46 46 H 1.09000 * 109.83003 * 340.92936 * 18 16 15 47 47 H 1.09002 * 109.82956 * 101.88142 * 18 16 15 48 48 H 0.97002 * 120.00404 * 180.02562 * 23 22 20 49 49 H 1.08993 * 110.07102 * 137.03445 * 28 19 18 50 50 H 1.09006 * 110.06677 * 258.50707 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5806 -1.1971 0.0009 7 6 4.3342 -2.5021 0.0015 8 6 2.1982 -1.1971 0.0056 9 6 1.4448 -2.5022 0.0123 10 6 1.1930 -2.9442 -1.4063 11 8 1.5871 -2.2664 -2.3316 12 7 0.5300 -4.0927 -1.6467 13 6 0.1347 -4.8858 -0.4994 14 6 -0.0598 -6.3490 -0.8606 15 8 -0.7009 -6.4955 -2.1116 16 6 -0.1075 -5.8972 -3.2402 17 1 -0.7880 -5.9653 -4.0891 18 6 1.2164 -6.6025 -3.5845 19 7 2.1921 -5.5662 -3.9427 20 6 3.4975 -5.7924 -4.2890 21 1 4.1421 -4.9621 -4.5372 22 6 3.9924 -7.0889 -4.3211 23 7 3.2068 -8.1008 -4.0192 24 14 5.7729 -7.3976 -4.7941 25 1 6.4391 -6.1029 -5.0863 26 1 6.4735 -8.0719 -3.6718 27 1 5.8218 -8.2632 -5.9998 28 6 1.5480 -4.2482 -3.8707 29 6 0.2660 -4.4304 -3.0271 30 1 -0.5229 -3.7874 -3.4171 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 0.8899 0.5139 33 1 -0.3633 -0.8900 0.5138 34 1 1.6581 2.1324 -0.0004 35 1 4.1205 2.1325 -0.0010 36 1 5.3517 0.0001 -0.0014 37 1 4.5164 -2.8159 1.0292 38 1 3.7448 -3.2622 -0.5114 39 1 5.2862 -2.3722 -0.5131 40 1 2.0340 -3.2593 0.5296 41 1 0.4926 -2.3693 0.5259 42 1 0.9057 -4.8093 0.2673 43 1 -0.8008 -4.4925 -0.1018 44 1 0.9135 -6.8382 -0.9001 45 1 -0.6674 -6.8274 -0.0924 46 1 1.5727 -7.1626 -2.7200 47 1 1.0675 -7.2772 -4.4276 48 1 3.5526 -9.0068 -4.0412 49 1 2.2138 -3.5323 -3.3890 50 1 1.2893 -3.9031 -4.8718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083096083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:18 Heat of formation + Delta-G solvation = -5.453178 kcal Electronic energy + Delta-G solvation = -32251.796567 eV Core-core repulsion = 28245.450709 eV Total energy + Delta-G solvation = -4006.345858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.92700 -39.68084 -38.12716 -35.87596 -34.76380 -33.56723 -33.38010 -32.28342 -29.98448 -29.17526 -27.90892 -27.38313 -26.62508 -26.22533 -24.51753 -23.26070 -21.77316 -20.67022 -20.54518 -19.69316 -18.43783 -17.47721 -16.89403 -16.49227 -16.32964 -16.10733 -15.30084 -15.23751 -14.83275 -14.65422 -14.47528 -14.13205 -13.93818 -13.58318 -13.44341 -13.16474 -12.94296 -12.89109 -12.80898 -12.67911 -12.57772 -12.15335 -12.09046 -11.85672 -11.60381 -11.47918 -11.33974 -11.06938 -10.93444 -10.84912 -10.80743 -10.62753 -10.60462 -10.37221 -10.05007 -9.70742 -9.32987 -8.89386 -8.59125 -8.49260 -8.46392 -8.17442 -6.77305 -5.69795 -3.02451 1.38362 1.44002 2.85001 3.13828 3.40000 3.46422 3.48824 3.77557 4.11125 4.51161 4.60702 4.72401 4.78170 4.88939 4.92229 4.95698 5.05152 5.15481 5.18344 5.29634 5.34101 5.41258 5.43560 5.45977 5.54604 5.61760 5.65520 5.66984 5.70523 5.72706 5.75083 5.84148 5.88239 5.97208 6.00161 6.09046 6.18253 6.30451 6.32009 6.52345 6.56204 6.58276 6.72461 6.87409 7.07666 7.21696 7.42327 7.52645 7.58429 7.75104 7.91057 8.26986 8.46872 9.24421 9.84842 10.48499 11.41702 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.004236 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.065007 B = 6607.832843 C = 8244.576632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.068 4.068 3 C -0.130 4.130 4 C -0.115 4.115 5 C -0.127 4.127 6 C -0.061 4.061 7 C -0.120 4.120 8 C -0.064 4.064 9 C -0.107 4.107 10 C 0.510 3.490 11 O -0.514 6.514 12 N -0.586 5.586 13 C 0.078 3.922 14 C 0.058 3.942 15 O -0.371 6.371 16 C 0.068 3.932 17 H 0.109 0.891 18 C 0.153 3.847 19 N -0.601 5.601 20 C -0.219 4.219 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.924 5.924 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.110 3.890 29 C 0.111 3.889 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.251 0.749 49 H 0.087 0.913 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 12.646 13.319 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.069 4.069 3 C -0.148 4.148 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.061 4.061 7 C -0.176 4.176 8 C -0.064 4.064 9 C -0.147 4.147 10 C 0.298 3.702 11 O -0.390 6.390 12 N -0.320 5.320 13 C -0.045 4.045 14 C -0.019 4.019 15 O -0.288 6.288 16 C 0.009 3.991 17 H 0.126 0.874 18 C 0.028 3.972 19 N -0.329 5.329 20 C -0.347 4.347 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.573 5.573 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.016 4.016 29 C 0.006 3.994 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.120 0.880 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.105 0.895 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.685 12.680 12.757 19.189 hybrid contribution 1.205 -0.183 -0.274 1.249 sum -5.480 12.497 12.484 18.494 Atomic orbital electron populations 1.20849 0.91583 1.02288 1.02589 1.19636 0.95721 0.92557 0.98941 1.20882 0.94236 0.97097 1.02555 1.21042 0.94272 0.97757 1.00212 1.20953 0.99605 0.91941 1.02002 1.19736 0.92963 0.95549 0.97853 1.20860 1.00449 0.94430 1.01899 1.18962 0.92769 0.93080 1.01614 1.20830 1.01945 0.96269 0.95641 1.20412 0.77870 0.80927 0.90976 1.90629 1.49369 1.53872 1.45106 1.46610 1.57426 1.21855 1.06151 1.21644 1.00438 0.93934 0.88520 1.22219 0.99737 0.93623 0.86371 1.86868 1.51667 1.75268 1.14985 1.22990 0.98436 0.90018 0.87608 0.87381 1.21655 0.84423 0.90572 1.00549 1.44236 1.08075 0.99886 1.80710 1.19100 0.84948 0.92454 1.38226 0.90425 1.24767 0.98159 0.95503 1.02112 1.69958 1.33944 0.98110 1.55272 0.86065 0.84433 0.77759 0.77709 1.20512 1.21854 1.21754 1.22163 0.92979 0.90565 0.95886 1.21801 0.99284 0.97265 0.81028 0.91219 0.90928 0.91709 0.91590 0.86422 0.86384 0.86264 0.91237 0.91098 0.91226 0.88069 0.88068 0.90121 0.91861 0.91994 0.88018 0.92653 0.93144 0.93882 0.89532 0.95961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.61 36.01 0.35 -0.84 16 2 C -0.07 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.13 -1.52 9.70 -39.58 -0.38 -1.91 16 4 C -0.11 -1.34 10.05 -39.58 -0.40 -1.73 16 5 C -0.13 -1.61 9.70 -39.58 -0.38 -1.99 16 6 C -0.06 -0.85 5.88 -104.62 -0.62 -1.46 16 7 C -0.12 -1.60 9.19 36.01 0.33 -1.27 16 8 C -0.06 -0.87 4.37 -104.62 -0.46 -1.33 16 9 C -0.11 -1.34 3.29 -29.03 -0.10 -1.44 16 10 C 0.51 8.39 6.71 -10.99 -0.07 8.32 16 11 O -0.51 -10.31 12.92 5.56 0.07 -10.24 16 12 N -0.59 -9.59 3.08 -168.52 -0.52 -10.11 16 13 C 0.08 1.00 5.87 -5.39 -0.03 0.97 16 14 C 0.06 0.84 6.72 36.63 0.25 1.08 16 15 O -0.37 -6.52 10.24 -34.45 -0.35 -6.88 16 16 C 0.07 1.32 3.82 -26.33 -0.10 1.22 16 17 H 0.11 1.94 8.14 -51.92 -0.42 1.51 16 18 C 0.15 3.73 5.02 -3.42 -0.02 3.71 16 19 N -0.60 -15.70 3.39 -171.21 -0.58 -16.28 16 20 C -0.22 -6.24 10.25 -15.06 -0.15 -6.40 16 21 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 23 N -0.92 -27.13 10.26 55.49 0.57 -26.56 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 C 0.11 2.50 6.29 -3.03 -0.02 2.48 16 29 C 0.11 2.08 3.45 -68.24 -0.24 1.85 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 0.59 5.94 -51.93 -0.31 0.29 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.10 6.37 -51.93 -0.33 0.77 16 39 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 40 H 0.10 1.15 5.72 -51.93 -0.30 0.85 16 41 H 0.10 1.00 5.87 -51.93 -0.31 0.69 16 42 H 0.08 0.87 6.31 -51.93 -0.33 0.54 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.05 6.81 -51.93 -0.35 0.70 16 45 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.48 5.74 -51.93 -0.30 1.18 16 47 H 0.05 1.37 7.49 -51.93 -0.39 0.98 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.09 2.11 4.81 -52.39 -0.25 1.86 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -33.77 380.61 -10.33 -44.10 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.48 Total: 3.37 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.75 Total: -0.59 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.53 Total: -52.95 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.28 Total: -17.12 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.77 -10.33 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083096083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.647 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds