Wall clock time and date at job start Wed Apr 1 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38249 * 120.00251 * 2 1 4 4 C 1.38216 * 119.99934 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00156 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00190 * 179.97438 * 5 4 3 7 7 C 1.38213 * 119.99715 * 359.94953 * 5 4 3 8 8 C 1.50696 * 119.99746 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.47172 * 85.00104 * 8 7 5 10 10 O 1.21278 * 119.99824 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00299 * 179.97438 * 9 8 7 12 12 C 1.44963 * 117.33609 * 357.48992 * 11 9 8 13 13 C 1.51963 * 111.93560 * 203.73043 * 12 11 9 14 14 O 1.41328 * 111.60674 * 319.69156 * 13 12 11 15 15 C 1.40847 * 118.30292 * 56.89649 * 14 13 12 16 16 H 1.09002 * 109.53865 * 187.73810 * 15 14 13 17 17 C 1.53931 * 110.46137 * 68.19229 * 15 14 13 18 18 N 1.46771 * 107.62313 * 221.67145 * 17 15 14 19 19 C 1.36932 * 125.36524 * 178.66179 * 18 17 15 20 20 H 1.07994 * 119.99894 * 185.51000 * 19 18 17 21 21 C 1.38811 * 119.99895 * 5.78950 * 19 18 17 22 22 N 1.31625 * 120.00033 * 352.76663 * 21 19 18 23 23 Si 1.86800 * 120.00343 * 172.76795 * 21 19 18 24 24 H 1.48499 * 109.47071 * 94.98410 * 23 21 19 25 25 H 1.48490 * 109.47320 * 214.98246 * 23 21 19 26 26 H 1.48501 * 109.46870 * 334.98561 * 23 21 19 27 27 C 1.46878 * 109.27287 * 358.39477 * 18 17 15 28 28 C 1.44544 * 117.33973 * 177.46238 * 11 9 8 29 29 H 1.08996 * 109.64361 * 285.99429 * 28 11 9 30 30 C 1.38215 * 119.99452 * 180.21508 * 2 1 3 31 31 H 1.09002 * 109.47305 * 89.99415 * 1 2 3 32 32 H 1.08999 * 109.47618 * 209.99741 * 1 2 3 33 33 H 1.09001 * 109.46648 * 330.00008 * 1 2 3 34 34 H 1.08002 * 120.00358 * 0.02562 * 3 2 1 35 35 H 1.08008 * 119.99880 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.47675 * 269.97817 * 6 5 4 37 37 H 1.09008 * 109.46784 * 29.97893 * 6 5 4 38 38 H 1.09000 * 109.47233 * 149.97603 * 6 5 4 39 39 H 1.09002 * 109.47821 * 325.00323 * 8 7 5 40 40 H 1.09003 * 109.47319 * 204.99675 * 8 7 5 41 41 H 1.08997 * 108.98806 * 324.35755 * 12 11 9 42 42 H 1.08996 * 108.99043 * 83.09200 * 12 11 9 43 43 H 1.08991 * 109.05575 * 80.24322 * 13 12 11 44 44 H 1.09004 * 109.04719 * 199.22112 * 13 12 11 45 45 H 1.09004 * 109.95364 * 102.07581 * 17 15 14 46 46 H 1.09004 * 109.70021 * 341.12770 * 17 15 14 47 47 H 0.96993 * 120.00408 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.06355 * 137.29613 * 27 18 17 49 49 H 1.08998 * 110.06989 * 258.76401 * 27 18 17 50 50 H 1.08000 * 120.00625 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0016 6 6 5.7787 -0.0003 -0.0028 7 6 3.5806 -1.1971 -0.0011 8 6 4.3340 -2.5022 -0.0017 9 6 4.6935 -2.8754 1.4135 10 8 4.3701 -2.1524 2.3320 11 7 5.3743 -4.0125 1.6584 12 6 5.6828 -4.8610 0.5243 13 6 5.9060 -6.3055 0.9402 14 8 6.6401 -6.3927 2.1448 15 6 6.1330 -5.7391 3.2847 16 1 6.8696 -5.7815 4.0870 17 6 4.8418 -6.4240 3.7678 18 7 3.8926 -5.3690 4.1422 19 6 2.6176 -5.5750 4.5971 20 1 1.9612 -4.7338 4.7637 21 6 2.1708 -6.8647 4.8497 22 7 2.9179 -7.8967 4.5191 23 14 0.5091 -7.1359 5.6588 24 1 -0.5196 -7.3642 4.6125 25 1 0.5801 -8.3215 6.5501 26 1 0.1458 -5.9375 6.4570 27 6 4.5279 -4.0576 3.9580 28 6 5.7378 -4.2861 3.0304 29 1 6.5573 -3.6327 3.3296 30 6 2.1980 -1.1970 -0.0045 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6584 2.1326 0.0004 35 1 4.1205 2.1325 -0.0010 36 1 6.1413 -0.0002 -1.0307 37 1 6.1425 0.8897 0.5109 38 1 6.1424 -0.8903 0.5107 39 1 5.2443 -2.3961 -0.5917 40 1 3.7087 -3.2826 -0.4355 41 1 4.8560 -4.8199 -0.1847 42 1 6.5842 -4.4887 0.0376 43 1 4.9393 -6.7899 1.0768 44 1 6.4545 -6.8219 0.1523 45 1 5.0554 -7.0528 4.6322 46 1 4.4237 -7.0291 2.9634 47 1 2.6056 -8.7979 4.6952 48 1 3.8265 -3.3642 3.4939 49 1 4.8609 -3.6650 4.9187 50 1 1.6580 -2.1323 -0.0084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083182989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:22 Heat of formation + Delta-G solvation = -9.208146 kcal Electronic energy + Delta-G solvation = -31776.522035 eV Core-core repulsion = 27770.013350 eV Total energy + Delta-G solvation = -4006.508686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.89515 -39.63613 -38.17811 -35.89477 -34.77500 -34.21572 -32.63758 -32.05770 -29.98248 -29.31670 -28.55907 -27.85273 -26.71136 -24.82972 -24.50417 -23.27919 -22.34211 -21.24013 -20.24908 -19.56005 -18.40827 -17.46885 -16.85455 -16.48585 -16.16192 -15.88692 -15.42241 -15.22617 -14.87288 -14.65925 -14.60996 -14.12512 -13.94795 -13.67962 -13.49879 -13.29169 -13.10826 -12.90688 -12.76444 -12.61797 -12.47535 -12.09542 -12.07573 -11.94191 -11.69772 -11.52232 -11.31852 -11.05986 -10.97336 -10.89553 -10.89392 -10.63076 -10.58857 -10.37340 -10.08938 -9.71679 -9.32725 -8.93079 -8.66887 -8.53313 -8.33832 -8.17640 -6.76420 -5.70575 -3.02112 1.35305 1.44045 2.83940 3.12911 3.40836 3.46973 3.49724 3.75082 4.11068 4.51944 4.60881 4.71102 4.74934 4.86868 4.89569 4.98227 5.11248 5.15915 5.19236 5.24229 5.33037 5.42021 5.44320 5.47925 5.51261 5.53419 5.55269 5.56882 5.69072 5.72499 5.75884 5.76416 5.89099 5.90390 6.00631 6.09328 6.13303 6.22417 6.31850 6.45934 6.56510 6.61824 6.68026 6.87876 7.06196 7.21622 7.40292 7.53294 7.59478 7.75231 7.90659 8.27483 8.45901 9.24540 9.85230 10.49325 11.41357 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010252 B = 0.004020 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.426480 B = 6962.840833 C = 8870.338342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.075 4.075 6 C -0.114 4.114 7 C -0.058 4.058 8 C -0.103 4.103 9 C 0.509 3.491 10 O -0.514 6.514 11 N -0.586 5.586 12 C 0.078 3.922 13 C 0.058 3.942 14 O -0.370 6.370 15 C 0.067 3.933 16 H 0.109 0.891 17 C 0.152 3.848 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.909 3.091 24 H -0.291 1.291 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.110 3.890 28 C 0.113 3.887 29 H 0.069 0.931 30 C -0.101 4.101 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.251 0.749 48 H 0.087 0.913 49 H 0.024 0.976 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 12.807 -14.640 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.136 4.136 5 C -0.075 4.075 6 C -0.171 4.171 7 C -0.058 4.058 8 C -0.143 4.143 9 C 0.297 3.703 10 O -0.390 6.390 11 N -0.320 5.320 12 C -0.045 4.045 13 C -0.020 4.020 14 O -0.287 6.287 15 C 0.008 3.992 16 H 0.127 0.873 17 C 0.027 3.973 18 N -0.329 5.329 19 C -0.350 4.350 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.571 5.571 23 Si 0.739 3.261 24 H -0.218 1.218 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.016 4.016 28 C 0.008 3.992 29 H 0.087 0.913 30 C -0.119 4.119 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.042 0.958 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.242 12.863 -14.055 19.760 hybrid contribution -1.122 -0.243 0.453 1.235 sum 4.120 12.620 -13.601 19.006 Atomic orbital electron populations 1.20775 0.91330 1.02913 1.01986 1.19821 0.95964 0.93047 1.00289 1.20946 0.94133 0.97310 1.01390 1.20908 0.94125 0.97176 1.01417 1.19634 0.95757 0.92558 0.99590 1.20793 0.91571 1.03005 1.01685 1.19110 0.93306 0.93097 1.00296 1.20773 1.01713 0.96286 0.95540 1.20435 0.77899 0.81091 0.90886 1.90636 1.52214 1.50880 1.45244 1.46614 1.56793 1.21518 1.07097 1.21646 1.01135 0.93089 0.88663 1.22217 0.98475 0.93925 0.87338 1.86869 1.50468 1.73847 1.17561 1.22950 0.99524 0.89573 0.87123 0.87286 1.21690 0.85494 0.90538 0.99623 1.44235 1.11614 0.99480 1.77595 1.19047 0.87556 0.92543 1.35822 0.90490 1.24788 0.98655 0.95430 1.01538 1.69963 1.37361 0.97525 1.52245 0.86140 0.83356 0.77411 0.79181 1.21795 1.21624 1.20612 1.22092 0.93886 0.90543 0.95048 1.21656 0.98670 0.97643 0.81226 0.91274 1.20891 0.93314 0.97768 0.99924 0.91435 0.91385 0.91711 0.86407 0.86326 0.91391 0.91579 0.91652 0.88138 0.88176 0.90093 0.91819 0.92027 0.87999 0.92921 0.93033 0.93819 0.89566 0.95849 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.09 -1.14 5.88 -104.63 -0.62 -1.75 16 3 C -0.12 -1.40 9.70 -39.59 -0.38 -1.78 16 4 C -0.12 -1.39 9.70 -39.58 -0.38 -1.78 16 5 C -0.08 -0.95 5.88 -104.62 -0.62 -1.57 16 6 C -0.11 -1.19 9.22 36.01 0.33 -0.86 16 7 C -0.06 -0.78 4.37 -104.63 -0.46 -1.24 16 8 C -0.10 -1.28 3.70 -29.03 -0.11 -1.39 16 9 C 0.51 8.40 6.36 -10.98 -0.07 8.33 16 10 O -0.51 -10.35 12.92 5.56 0.07 -10.27 16 11 N -0.59 -9.63 3.09 -168.83 -0.52 -10.15 16 12 C 0.08 1.00 5.87 -5.39 -0.03 0.97 16 13 C 0.06 0.84 6.72 36.63 0.25 1.08 16 14 O -0.37 -6.54 10.25 -34.45 -0.35 -6.89 16 15 C 0.07 1.30 3.81 -26.39 -0.10 1.20 16 16 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 17 C 0.15 3.72 5.04 -3.41 -0.02 3.70 16 18 N -0.60 -15.85 3.39 -171.43 -0.58 -16.43 16 19 C -0.22 -6.37 10.24 -15.06 -0.15 -6.53 16 20 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 21 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 22 N -0.92 -27.27 10.31 55.49 0.57 -26.70 16 23 Si 0.91 22.57 29.56 -169.99 -5.02 17.55 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.11 2.52 6.29 -3.23 -0.02 2.50 16 28 C 0.11 2.13 3.41 -68.51 -0.23 1.89 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 C -0.10 -1.38 9.34 -39.58 -0.37 -1.75 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.64 8.09 -51.92 -0.42 0.22 16 38 H 0.06 0.75 6.16 -51.93 -0.32 0.43 16 39 H 0.10 0.97 6.92 -51.93 -0.36 0.61 16 40 H 0.10 1.10 7.05 -51.93 -0.37 0.74 16 41 H 0.08 0.87 6.31 -51.93 -0.33 0.54 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.05 6.84 -51.93 -0.35 0.70 16 44 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 1.44 7.38 -51.93 -0.38 1.05 16 46 H 0.05 1.39 5.90 -51.93 -0.31 1.08 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.09 2.12 4.81 -52.39 -0.25 1.87 16 49 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -34.17 384.82 -10.46 -44.62 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.70 Total: 2.53 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.72 Total: -0.06 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.53 Total: -53.28 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.28 Total: -17.16 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.17 -10.46 -44.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083182989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.416 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds