Wall clock time and date at job start Wed Apr 1 2020 02:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38249 * 120.00251 * 2 1 4 4 C 1.38216 * 119.99934 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00156 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00190 * 179.97438 * 5 4 3 7 7 C 1.38213 * 119.99715 * 359.94953 * 5 4 3 8 8 C 1.50696 * 119.99746 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.47172 * 85.00104 * 8 7 5 10 10 O 1.21278 * 119.99824 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00299 * 179.97438 * 9 8 7 12 12 C 1.44963 * 117.33609 * 357.48992 * 11 9 8 13 13 C 1.51963 * 111.93560 * 203.73043 * 12 11 9 14 14 O 1.41328 * 111.60674 * 319.69156 * 13 12 11 15 15 C 1.40847 * 118.30292 * 56.89649 * 14 13 12 16 16 H 1.09002 * 109.53865 * 187.73810 * 15 14 13 17 17 C 1.53931 * 110.46137 * 68.19229 * 15 14 13 18 18 N 1.46771 * 107.62313 * 221.67145 * 17 15 14 19 19 C 1.36932 * 125.36524 * 178.66179 * 18 17 15 20 20 H 1.07994 * 119.99894 * 185.51000 * 19 18 17 21 21 C 1.38811 * 119.99895 * 5.78950 * 19 18 17 22 22 N 1.31625 * 120.00033 * 352.76663 * 21 19 18 23 23 Si 1.86800 * 120.00343 * 172.76795 * 21 19 18 24 24 H 1.48499 * 109.47071 * 94.98410 * 23 21 19 25 25 H 1.48490 * 109.47320 * 214.98246 * 23 21 19 26 26 H 1.48501 * 109.46870 * 334.98561 * 23 21 19 27 27 C 1.46878 * 109.27287 * 358.39477 * 18 17 15 28 28 C 1.44544 * 117.33973 * 177.46238 * 11 9 8 29 29 H 1.08996 * 109.64361 * 285.99429 * 28 11 9 30 30 C 1.38215 * 119.99452 * 180.21508 * 2 1 3 31 31 H 1.09002 * 109.47305 * 89.99415 * 1 2 3 32 32 H 1.08999 * 109.47618 * 209.99741 * 1 2 3 33 33 H 1.09001 * 109.46648 * 330.00008 * 1 2 3 34 34 H 1.08002 * 120.00358 * 0.02562 * 3 2 1 35 35 H 1.08008 * 119.99880 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.47675 * 269.97817 * 6 5 4 37 37 H 1.09008 * 109.46784 * 29.97893 * 6 5 4 38 38 H 1.09000 * 109.47233 * 149.97603 * 6 5 4 39 39 H 1.09002 * 109.47821 * 325.00323 * 8 7 5 40 40 H 1.09003 * 109.47319 * 204.99675 * 8 7 5 41 41 H 1.08997 * 108.98806 * 324.35755 * 12 11 9 42 42 H 1.08996 * 108.99043 * 83.09200 * 12 11 9 43 43 H 1.08991 * 109.05575 * 80.24322 * 13 12 11 44 44 H 1.09004 * 109.04719 * 199.22112 * 13 12 11 45 45 H 1.09004 * 109.95364 * 102.07581 * 17 15 14 46 46 H 1.09004 * 109.70021 * 341.12770 * 17 15 14 47 47 H 0.96993 * 120.00408 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.06355 * 137.29613 * 27 18 17 49 49 H 1.08998 * 110.06989 * 258.76401 * 27 18 17 50 50 H 1.08000 * 120.00625 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0016 6 6 5.7787 -0.0003 -0.0028 7 6 3.5806 -1.1971 -0.0011 8 6 4.3340 -2.5022 -0.0017 9 6 4.6935 -2.8754 1.4135 10 8 4.3701 -2.1524 2.3320 11 7 5.3743 -4.0125 1.6584 12 6 5.6828 -4.8610 0.5243 13 6 5.9060 -6.3055 0.9402 14 8 6.6401 -6.3927 2.1448 15 6 6.1330 -5.7391 3.2847 16 1 6.8696 -5.7815 4.0870 17 6 4.8418 -6.4240 3.7678 18 7 3.8926 -5.3690 4.1422 19 6 2.6176 -5.5750 4.5971 20 1 1.9612 -4.7338 4.7637 21 6 2.1708 -6.8647 4.8497 22 7 2.9179 -7.8967 4.5191 23 14 0.5091 -7.1359 5.6588 24 1 -0.5196 -7.3642 4.6125 25 1 0.5801 -8.3215 6.5501 26 1 0.1458 -5.9375 6.4570 27 6 4.5279 -4.0576 3.9580 28 6 5.7378 -4.2861 3.0304 29 1 6.5573 -3.6327 3.3296 30 6 2.1980 -1.1970 -0.0045 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6584 2.1326 0.0004 35 1 4.1205 2.1325 -0.0010 36 1 6.1413 -0.0002 -1.0307 37 1 6.1425 0.8897 0.5109 38 1 6.1424 -0.8903 0.5107 39 1 5.2443 -2.3961 -0.5917 40 1 3.7087 -3.2826 -0.4355 41 1 4.8560 -4.8199 -0.1847 42 1 6.5842 -4.4887 0.0376 43 1 4.9393 -6.7899 1.0768 44 1 6.4545 -6.8219 0.1523 45 1 5.0554 -7.0528 4.6322 46 1 4.4237 -7.0291 2.9634 47 1 2.6056 -8.7979 4.6952 48 1 3.8265 -3.3642 3.4939 49 1 4.8609 -3.6650 4.9187 50 1 1.6580 -2.1323 -0.0084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083182989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:21 Heat of formation + Delta-G solvation = -30.175939 kcal Electronic energy + Delta-G solvation = -31777.431267 eV Core-core repulsion = 27770.013350 eV Total energy + Delta-G solvation = -4007.417917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.22879 -40.68651 -39.47724 -37.63862 -36.10761 -35.17110 -34.35895 -33.21980 -31.68315 -30.12271 -29.79434 -29.53303 -28.15159 -26.45091 -25.62079 -24.65045 -23.45444 -22.61483 -21.70984 -20.81964 -19.76666 -19.14466 -18.22827 -18.16261 -17.27186 -16.94255 -16.86261 -16.54382 -16.27646 -16.09227 -15.71492 -15.57949 -15.30726 -15.18174 -14.66941 -14.28589 -14.25123 -14.06249 -13.91475 -13.83155 -13.65634 -13.60326 -13.43005 -13.01887 -12.96056 -12.86883 -12.79004 -12.73556 -12.41835 -12.33470 -12.16863 -12.13336 -11.86191 -11.80511 -11.77895 -11.68833 -10.84325 -10.73845 -10.32626 -9.65843 -9.51953 -9.23749 -8.90289 -7.91631 -5.26230 0.42764 0.50799 1.39893 1.41862 1.51929 1.59733 1.89768 2.43711 2.74225 2.84346 3.26050 3.41335 3.61213 3.70958 3.72085 3.83557 3.88534 3.99076 4.03913 4.11181 4.15229 4.22326 4.32190 4.34217 4.39703 4.44488 4.53104 4.56078 4.60224 4.71311 4.74770 4.80343 4.84423 4.86711 4.88557 4.91868 5.01872 5.10347 5.12685 5.23988 5.36702 5.39181 5.46492 5.55590 5.61556 5.66670 5.71434 5.75731 6.14009 6.16605 6.29036 6.43694 7.04915 7.19711 7.71643 8.34036 9.18122 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010252 B = 0.004020 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.426480 B = 6962.840833 C = 8870.338342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.088 4.088 6 C -0.111 4.111 7 C -0.076 4.076 8 C -0.093 4.093 9 C 0.505 3.495 10 O -0.558 6.558 11 N -0.592 5.592 12 C 0.073 3.927 13 C 0.050 3.950 14 O -0.372 6.372 15 C 0.084 3.916 16 H 0.124 0.876 17 C 0.163 3.837 18 N -0.618 5.618 19 C -0.244 4.244 20 H 0.069 0.931 21 C -0.056 4.056 22 N -0.945 5.945 23 Si 0.975 3.025 24 H -0.284 1.284 25 H -0.288 1.288 26 H -0.274 1.274 27 C 0.109 3.891 28 C 0.125 3.875 29 H 0.089 0.911 30 C -0.126 4.126 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.135 0.865 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.026 0.974 44 H 0.147 0.853 45 H 0.015 0.985 46 H 0.022 0.978 47 H 0.249 0.751 48 H 0.071 0.929 49 H 0.015 0.985 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.331 14.105 -16.754 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.106 4.106 3 C -0.144 4.144 4 C -0.144 4.144 5 C -0.088 4.088 6 C -0.167 4.167 7 C -0.076 4.076 8 C -0.132 4.132 9 C 0.295 3.705 10 O -0.437 6.437 11 N -0.326 5.326 12 C -0.049 4.049 13 C -0.026 4.026 14 O -0.289 6.289 15 C 0.025 3.975 16 H 0.142 0.858 17 C 0.038 3.962 18 N -0.346 5.346 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.250 4.250 22 N -0.594 5.594 23 Si 0.802 3.198 24 H -0.211 1.211 25 H -0.214 1.214 26 H -0.199 1.199 27 C -0.017 4.017 28 C 0.020 3.980 29 H 0.106 0.894 30 C -0.144 4.144 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.153 0.847 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.045 0.955 44 H 0.165 0.835 45 H 0.033 0.967 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.089 0.911 49 H 0.033 0.967 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.252 14.163 -16.209 22.415 hybrid contribution -1.467 -0.627 1.084 1.929 sum 4.785 13.536 -15.126 20.855 Atomic orbital electron populations 1.20797 0.90053 1.02933 1.03027 1.20144 0.97181 0.93115 1.00171 1.21279 0.94523 0.97917 1.00705 1.21273 0.94436 0.97990 1.00695 1.19983 0.97082 0.92541 0.99237 1.20810 0.90020 1.02731 1.03150 1.19310 0.93360 0.94007 1.00941 1.20789 1.03305 0.96191 0.92920 1.21160 0.76757 0.80381 0.92198 1.90609 1.53771 1.52312 1.46973 1.46778 1.56789 1.22168 1.06835 1.21978 1.04026 0.91212 0.87701 1.22547 0.97353 0.95645 0.87084 1.86877 1.50347 1.73739 1.17923 1.22653 0.97007 0.89335 0.88504 0.85808 1.21442 0.87557 0.90095 0.97114 1.44463 1.11367 1.01294 1.77434 1.19287 0.88890 0.92645 1.36476 0.91308 1.25578 1.02340 0.95052 1.02006 1.70172 1.38898 0.97571 1.52733 0.85129 0.79180 0.77277 0.78170 1.21108 1.21395 1.19907 1.22137 0.95190 0.88701 0.95644 1.21370 0.97000 0.97333 0.82323 0.89361 1.21062 0.93978 0.98111 1.01295 0.89844 0.92430 0.90575 0.84183 0.84085 0.88925 0.91014 0.92743 0.84722 0.86881 0.87815 0.87618 0.95536 0.83518 0.96692 0.96023 0.94188 0.91115 0.96738 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 10.01 71.24 0.71 -1.47 16 2 C -0.11 -2.60 5.88 -19.87 -0.12 -2.71 16 3 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 4 C -0.13 -2.74 9.70 22.27 0.22 -2.53 16 5 C -0.09 -2.08 5.88 -19.87 -0.12 -2.20 16 6 C -0.11 -2.02 9.22 71.24 0.66 -1.36 16 7 C -0.08 -1.97 4.37 -19.87 -0.09 -2.05 16 8 C -0.09 -2.10 3.70 29.10 0.11 -2.00 16 9 C 0.51 16.14 6.36 87.66 0.56 16.70 16 10 O -0.56 -22.68 12.92 -3.02 -0.04 -22.72 16 11 N -0.59 -18.50 3.09 -806.46 -2.49 -20.99 16 12 C 0.07 1.62 5.87 86.33 0.51 2.13 16 13 C 0.05 1.35 6.72 71.64 0.48 1.83 16 14 O -0.37 -12.57 10.25 -146.17 -1.50 -14.07 16 15 C 0.08 3.26 3.81 30.81 0.12 3.38 16 16 H 0.12 4.38 8.14 -2.39 -0.02 4.36 16 17 C 0.16 8.34 5.04 86.64 0.44 8.78 16 18 N -0.62 -33.92 3.39 -696.27 -2.36 -36.27 16 19 C -0.24 -14.61 10.24 84.03 0.86 -13.75 16 20 H 0.07 4.11 7.84 -2.91 -0.02 4.09 16 21 C -0.06 -3.32 5.48 84.86 0.46 -2.85 16 22 N -0.95 -57.80 10.31 21.65 0.22 -57.58 16 23 Si 0.97 47.44 29.56 68.60 2.03 49.47 16 24 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 27 C 0.11 5.13 6.29 86.70 0.55 5.67 16 28 C 0.13 4.66 3.41 45.65 0.16 4.82 16 29 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 30 C -0.13 -3.46 9.34 22.27 0.21 -3.25 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 33 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 34 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 38 H 0.05 1.12 6.16 -2.39 -0.01 1.10 16 39 H 0.13 2.08 6.92 -2.39 -0.02 2.06 16 40 H 0.11 2.25 7.05 -2.39 -0.02 2.23 16 41 H 0.10 1.86 6.31 -2.39 -0.02 1.85 16 42 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.03 0.90 6.84 -2.39 -0.02 0.88 16 44 H 0.15 2.62 8.14 -2.39 -0.02 2.61 16 45 H 0.01 0.86 7.38 -2.39 -0.02 0.84 16 46 H 0.02 1.22 5.90 -2.39 -0.01 1.21 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.07 3.62 4.81 -9.65 -0.05 3.58 16 49 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.11 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -78.63 384.82 2.70 -75.93 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.91 Total: 19.65 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.92 Total: 6.58 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -4.62 Total: -114.84 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.54 Total: -36.78 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -78.63 2.70 -75.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083182989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.756 kcal (2) G-P(sol) polarization free energy of solvation -78.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds