Wall clock time and date at job start Wed Apr 1 2020 02:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38233 * 120.00577 * 2 1 4 4 C 1.38234 * 120.00363 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00157 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99532 * 0.02562 * 4 3 2 7 7 C 1.38227 * 120.00439 * 359.95714 * 6 4 3 8 8 C 1.50700 * 120.00379 * 179.97438 * 7 6 4 9 9 C 1.50707 * 109.46706 * 89.99711 * 8 7 6 10 10 O 1.21276 * 120.00060 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99791 * 180.02562 * 9 8 7 12 12 C 1.44970 * 117.32350 * 356.30952 * 11 9 8 13 13 C 1.51769 * 111.99415 * 203.53768 * 12 11 9 14 14 O 1.41316 * 111.64052 * 319.67116 * 13 12 11 15 15 C 1.40785 * 118.40261 * 56.76884 * 14 13 12 16 16 H 1.08996 * 109.35623 * 188.31333 * 15 14 13 17 17 C 1.54200 * 110.23062 * 67.70090 * 15 14 13 18 18 N 1.46870 * 106.39766 * 210.34464 * 17 15 14 19 19 C 1.36942 * 125.36403 * 197.86741 * 18 17 15 20 20 H 1.08001 * 119.99704 * 179.97438 * 19 18 17 21 21 C 1.38802 * 120.00172 * 359.96965 * 19 18 17 22 22 N 1.31618 * 119.99840 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00190 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47041 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47416 * 119.99627 * 23 21 19 26 26 H 1.48500 * 109.47221 * 239.99897 * 23 21 19 27 27 C 1.46786 * 109.27174 * 17.84024 * 18 17 15 28 28 C 1.44535 * 117.32298 * 176.56574 * 11 9 8 29 29 H 1.08996 * 109.49331 * 285.85486 * 28 11 9 30 30 C 1.38240 * 119.99518 * 180.20790 * 2 1 3 31 31 H 1.09003 * 109.47217 * 90.00008 * 1 2 3 32 32 H 1.09000 * 109.47818 * 209.99998 * 1 2 3 33 33 H 1.09001 * 109.47224 * 329.99973 * 1 2 3 34 34 H 1.08003 * 119.99416 * 0.02562 * 3 2 1 35 35 H 1.09005 * 109.46783 * 270.02507 * 5 4 3 36 36 H 1.09001 * 109.47375 * 30.02007 * 5 4 3 37 37 H 1.08998 * 109.47249 * 150.02325 * 5 4 3 38 38 H 1.08001 * 119.99126 * 179.97438 * 6 4 3 39 39 H 1.08998 * 109.46670 * 330.00318 * 8 7 6 40 40 H 1.08995 * 109.47740 * 209.99867 * 8 7 6 41 41 H 1.08998 * 108.99455 * 324.33232 * 12 11 9 42 42 H 1.09004 * 108.99651 * 83.08761 * 12 11 9 43 43 H 1.09005 * 109.15385 * 199.01742 * 13 12 11 44 44 H 1.09006 * 108.82099 * 80.10835 * 13 12 11 45 45 H 1.08998 * 110.07237 * 91.10746 * 17 15 14 46 46 H 1.09012 * 110.06934 * 329.57552 * 17 15 14 47 47 H 0.97006 * 119.99985 * 179.97438 * 22 21 19 48 48 H 1.09006 * 109.82597 * 239.36200 * 27 18 17 49 49 H 1.08999 * 109.90257 * 118.43927 * 27 18 17 50 50 H 1.07996 * 120.00214 * 0.04762 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.3341 2.5020 0.0011 6 6 4.2716 -0.0003 0.0005 7 6 3.5804 -1.1973 0.0009 8 6 4.3338 -2.5025 0.0003 9 6 4.5859 -2.9376 1.4210 10 8 4.1921 -2.2552 2.3431 11 7 5.2489 -4.0849 1.6668 12 6 5.6213 -4.8961 0.5245 13 6 5.8216 -6.3523 0.9025 14 8 6.4872 -6.4820 2.1423 15 6 5.9206 -5.8660 3.2743 16 1 6.6189 -5.9312 4.1087 17 6 4.5959 -6.5593 3.6517 18 7 3.7476 -5.5279 4.2630 19 6 2.6469 -5.7664 5.0421 20 1 2.0843 -4.9393 5.4494 21 6 2.2544 -7.0708 5.3082 22 7 2.9397 -8.0787 4.8113 23 14 0.7525 -7.3961 6.3702 24 1 0.1623 -6.1036 6.8019 25 1 -0.2506 -8.1621 5.5879 26 1 1.1523 -8.1810 7.5658 27 6 4.2659 -4.2013 3.9080 28 6 5.5254 -4.4085 3.0481 29 1 6.3269 -3.7692 3.4180 30 6 2.1980 -1.1972 -0.0043 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3635 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1324 0.0004 35 1 4.5158 2.8171 -1.0265 36 1 3.7451 3.2615 0.5152 37 1 5.2865 2.3714 0.5149 38 1 5.3516 -0.0002 0.0005 39 1 5.2859 -2.3721 -0.5141 40 1 3.7444 -3.2621 -0.5131 41 1 4.8371 -4.8283 -0.2295 42 1 6.5503 -4.5113 0.1038 43 1 6.4106 -6.8449 0.1288 44 1 4.8468 -6.8355 0.9694 45 1 4.7835 -7.3611 4.3658 46 1 4.1148 -6.9582 2.7585 47 1 2.6656 -8.9904 4.9975 48 1 4.5226 -3.6503 4.8129 49 1 3.5167 -3.6501 3.3397 50 1 1.6580 -2.1325 -0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083183000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:26 Heat of formation + Delta-G solvation = -12.087281 kcal Electronic energy + Delta-G solvation = -31247.798298 eV Core-core repulsion = 27241.164764 eV Total energy + Delta-G solvation = -4006.633534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.87417 -39.61385 -38.24403 -35.93782 -34.80550 -33.59546 -33.55620 -32.30786 -30.02730 -28.95239 -27.88022 -27.39114 -26.73168 -26.58079 -24.56435 -23.30452 -21.81208 -20.78019 -20.47271 -19.70869 -18.41186 -17.48072 -16.91873 -16.51517 -16.33001 -16.04263 -15.41854 -15.19829 -14.96873 -14.64349 -14.39427 -14.10235 -13.93311 -13.77402 -13.46259 -13.31550 -13.02584 -12.98133 -12.79973 -12.77724 -12.62628 -12.27233 -12.12470 -12.03382 -11.64947 -11.52695 -11.35997 -11.09826 -11.02107 -11.00135 -10.86523 -10.70433 -10.42453 -10.35417 -10.04537 -9.74908 -9.35528 -8.98162 -8.61000 -8.54992 -8.52894 -8.22062 -6.77685 -5.66287 -3.04228 1.33530 1.39029 2.81049 3.08133 3.41085 3.47009 3.49813 3.71752 4.09489 4.50422 4.55952 4.67548 4.70446 4.73921 4.85220 5.04302 5.09669 5.16985 5.19330 5.21050 5.27514 5.35663 5.43056 5.43492 5.45513 5.50818 5.53031 5.55984 5.57746 5.69192 5.72944 5.74947 5.80843 5.85589 5.93659 6.10915 6.13544 6.16639 6.25823 6.51705 6.53574 6.58761 6.63429 6.85840 7.02738 7.18954 7.37635 7.49907 7.63216 7.74746 7.89355 8.30940 8.42429 9.24171 9.84576 10.47310 11.40643 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010894 B = 0.003450 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.563497 B = 8113.988224 C = 9799.957839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.111 4.111 7 C -0.054 4.054 8 C -0.102 4.102 9 C 0.507 3.493 10 O -0.513 6.513 11 N -0.590 5.590 12 C 0.077 3.923 13 C 0.057 3.943 14 O -0.370 6.370 15 C 0.067 3.933 16 H 0.113 0.887 17 C 0.141 3.859 18 N -0.603 5.603 19 C -0.218 4.218 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.924 5.924 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.124 3.876 28 C 0.113 3.887 29 H 0.068 0.932 30 C -0.108 4.108 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.021 0.979 47 H 0.251 0.749 48 H 0.031 0.969 49 H 0.063 0.937 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.740 13.985 -15.631 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.085 4.085 5 C -0.168 4.168 6 C -0.129 4.129 7 C -0.054 4.054 8 C -0.142 4.142 9 C 0.294 3.706 10 O -0.389 6.389 11 N -0.325 5.325 12 C -0.046 4.046 13 C -0.020 4.020 14 O -0.287 6.287 15 C 0.008 3.992 16 H 0.130 0.870 17 C 0.015 3.985 18 N -0.331 5.331 19 C -0.346 4.346 20 H 0.097 0.903 21 C -0.207 4.207 22 N -0.573 5.573 23 Si 0.744 3.256 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.001 4.001 28 C 0.009 3.991 29 H 0.086 0.914 30 C -0.126 4.126 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.121 0.879 44 H 0.077 0.923 45 H 0.116 0.884 46 H 0.039 0.961 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.080 0.920 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.609 14.048 -15.017 21.074 hybrid contribution -0.998 -0.227 0.453 1.119 sum 3.612 13.821 -14.564 20.400 Atomic orbital electron populations 1.20786 0.91262 1.02978 1.02055 1.19828 0.95968 0.92986 0.99336 1.20842 0.93479 0.97365 1.02470 1.19802 0.93804 0.95089 0.99830 1.20761 0.99949 0.94154 1.01983 1.20776 0.99322 0.91436 1.01371 1.19228 0.93482 0.93475 0.99223 1.20761 1.01918 0.96102 0.95388 1.20490 0.77983 0.81005 0.91100 1.90706 1.48992 1.53581 1.45581 1.46714 1.57834 1.21611 1.06312 1.21625 1.00780 0.93692 0.88532 1.22186 0.99285 0.93695 0.86833 1.86849 1.51610 1.74661 1.15581 1.23075 0.99087 0.89768 0.87245 0.86983 1.22042 0.85831 0.92525 0.98075 1.44285 1.30738 0.99481 1.58642 1.19129 1.01473 0.92185 1.21861 0.90325 1.24785 0.99553 0.95422 1.00967 1.69879 1.40473 0.97941 1.49030 0.86002 0.82085 0.77787 0.79706 1.20494 1.21818 1.21720 1.21798 0.93534 0.89252 0.95540 1.21563 0.98968 0.97907 0.80707 0.91378 1.20868 0.93402 0.97711 1.00659 0.91348 0.91326 0.91652 0.86425 0.91410 0.91679 0.91603 0.86488 0.88149 0.88092 0.90065 0.91731 0.87882 0.92319 0.88405 0.96129 0.93829 0.95123 0.91953 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.00 0.36 -0.76 16 2 C -0.08 -1.00 5.88 -104.63 -0.62 -1.61 16 3 C -0.12 -1.43 9.36 -39.58 -0.37 -1.80 16 4 C -0.09 -0.98 5.88 -104.62 -0.62 -1.60 16 5 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 6 C -0.11 -1.37 9.36 -39.58 -0.37 -1.74 16 7 C -0.05 -0.70 4.37 -104.62 -0.46 -1.16 16 8 C -0.10 -1.21 4.41 -29.03 -0.13 -1.33 16 9 C 0.51 8.29 7.04 -10.98 -0.08 8.21 16 10 O -0.51 -10.40 13.05 5.56 0.07 -10.33 16 11 N -0.59 -9.61 3.09 -169.12 -0.52 -10.14 16 12 C 0.08 0.96 5.85 -5.49 -0.03 0.93 16 13 C 0.06 0.81 6.73 36.53 0.25 1.05 16 14 O -0.37 -6.52 10.25 -34.35 -0.35 -6.88 16 15 C 0.07 1.33 3.91 -26.26 -0.10 1.22 16 16 H 0.11 2.11 8.14 -51.93 -0.42 1.68 16 17 C 0.14 3.47 5.26 -3.21 -0.02 3.45 16 18 N -0.60 -16.06 3.39 -171.41 -0.58 -16.64 16 19 C -0.22 -6.30 10.25 -15.06 -0.15 -6.46 16 20 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 21 C -0.01 -0.35 5.48 -17.43 -0.10 -0.44 16 22 N -0.92 -27.28 10.18 55.49 0.56 -26.72 16 23 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.12 2.89 6.06 -3.42 -0.02 2.87 16 28 C 0.11 2.16 3.34 -68.66 -0.23 1.93 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 C -0.11 -1.45 9.36 -39.58 -0.37 -1.82 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 37 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.10 0.91 8.03 -51.93 -0.42 0.49 16 40 H 0.10 1.02 7.06 -51.93 -0.37 0.66 16 41 H 0.08 0.81 6.33 -51.93 -0.33 0.48 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.95 6.73 -51.93 -0.35 0.60 16 45 H 0.10 2.72 6.25 -51.93 -0.32 2.39 16 46 H 0.02 0.55 6.47 -51.92 -0.34 0.21 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 1.56 5.18 -51.93 -0.27 1.29 16 50 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -34.38 389.11 -10.51 -44.90 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.84 Total: 2.03 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -2.69 Total: 0.33 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.54 Total: -53.49 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.28 Total: -17.20 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.38 -10.51 -44.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083183000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.809 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds