Wall clock time and date at job start Wed Apr 1 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38233 * 120.00577 * 2 1 4 4 C 1.38234 * 120.00363 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00157 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99532 * 0.02562 * 4 3 2 7 7 C 1.38227 * 120.00439 * 359.95714 * 6 4 3 8 8 C 1.50700 * 120.00379 * 179.97438 * 7 6 4 9 9 C 1.50707 * 109.46706 * 89.99711 * 8 7 6 10 10 O 1.21276 * 120.00060 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99791 * 180.02562 * 9 8 7 12 12 C 1.44970 * 117.32350 * 356.30952 * 11 9 8 13 13 C 1.51769 * 111.99415 * 203.53768 * 12 11 9 14 14 O 1.41316 * 111.64052 * 319.67116 * 13 12 11 15 15 C 1.40785 * 118.40261 * 56.76884 * 14 13 12 16 16 H 1.08996 * 109.35623 * 188.31333 * 15 14 13 17 17 C 1.54200 * 110.23062 * 67.70090 * 15 14 13 18 18 N 1.46870 * 106.39766 * 210.34464 * 17 15 14 19 19 C 1.36942 * 125.36403 * 197.86741 * 18 17 15 20 20 H 1.08001 * 119.99704 * 179.97438 * 19 18 17 21 21 C 1.38802 * 120.00172 * 359.96965 * 19 18 17 22 22 N 1.31618 * 119.99840 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00190 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47041 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47416 * 119.99627 * 23 21 19 26 26 H 1.48500 * 109.47221 * 239.99897 * 23 21 19 27 27 C 1.46786 * 109.27174 * 17.84024 * 18 17 15 28 28 C 1.44535 * 117.32298 * 176.56574 * 11 9 8 29 29 H 1.08996 * 109.49331 * 285.85486 * 28 11 9 30 30 C 1.38240 * 119.99518 * 180.20790 * 2 1 3 31 31 H 1.09003 * 109.47217 * 90.00008 * 1 2 3 32 32 H 1.09000 * 109.47818 * 209.99998 * 1 2 3 33 33 H 1.09001 * 109.47224 * 329.99973 * 1 2 3 34 34 H 1.08003 * 119.99416 * 0.02562 * 3 2 1 35 35 H 1.09005 * 109.46783 * 270.02507 * 5 4 3 36 36 H 1.09001 * 109.47375 * 30.02007 * 5 4 3 37 37 H 1.08998 * 109.47249 * 150.02325 * 5 4 3 38 38 H 1.08001 * 119.99126 * 179.97438 * 6 4 3 39 39 H 1.08998 * 109.46670 * 330.00318 * 8 7 6 40 40 H 1.08995 * 109.47740 * 209.99867 * 8 7 6 41 41 H 1.08998 * 108.99455 * 324.33232 * 12 11 9 42 42 H 1.09004 * 108.99651 * 83.08761 * 12 11 9 43 43 H 1.09005 * 109.15385 * 199.01742 * 13 12 11 44 44 H 1.09006 * 108.82099 * 80.10835 * 13 12 11 45 45 H 1.08998 * 110.07237 * 91.10746 * 17 15 14 46 46 H 1.09012 * 110.06934 * 329.57552 * 17 15 14 47 47 H 0.97006 * 119.99985 * 179.97438 * 22 21 19 48 48 H 1.09006 * 109.82597 * 239.36200 * 27 18 17 49 49 H 1.08999 * 109.90257 * 118.43927 * 27 18 17 50 50 H 1.07996 * 120.00214 * 0.04762 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.3341 2.5020 0.0011 6 6 4.2716 -0.0003 0.0005 7 6 3.5804 -1.1973 0.0009 8 6 4.3338 -2.5025 0.0003 9 6 4.5859 -2.9376 1.4210 10 8 4.1921 -2.2552 2.3431 11 7 5.2489 -4.0849 1.6668 12 6 5.6213 -4.8961 0.5245 13 6 5.8216 -6.3523 0.9025 14 8 6.4872 -6.4820 2.1423 15 6 5.9206 -5.8660 3.2743 16 1 6.6189 -5.9312 4.1087 17 6 4.5959 -6.5593 3.6517 18 7 3.7476 -5.5279 4.2630 19 6 2.6469 -5.7664 5.0421 20 1 2.0843 -4.9393 5.4494 21 6 2.2544 -7.0708 5.3082 22 7 2.9397 -8.0787 4.8113 23 14 0.7525 -7.3961 6.3702 24 1 0.1623 -6.1036 6.8019 25 1 -0.2506 -8.1621 5.5879 26 1 1.1523 -8.1810 7.5658 27 6 4.2659 -4.2013 3.9080 28 6 5.5254 -4.4085 3.0481 29 1 6.3269 -3.7692 3.4180 30 6 2.1980 -1.1972 -0.0043 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3635 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1324 0.0004 35 1 4.5158 2.8171 -1.0265 36 1 3.7451 3.2615 0.5152 37 1 5.2865 2.3714 0.5149 38 1 5.3516 -0.0002 0.0005 39 1 5.2859 -2.3721 -0.5141 40 1 3.7444 -3.2621 -0.5131 41 1 4.8371 -4.8283 -0.2295 42 1 6.5503 -4.5113 0.1038 43 1 6.4106 -6.8449 0.1288 44 1 4.8468 -6.8355 0.9694 45 1 4.7835 -7.3611 4.3658 46 1 4.1148 -6.9582 2.7585 47 1 2.6656 -8.9904 4.9975 48 1 4.5226 -3.6503 4.8129 49 1 3.5167 -3.6501 3.3397 50 1 1.6580 -2.1325 -0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083183000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:25 Heat of formation + Delta-G solvation = -33.127066 kcal Electronic energy + Delta-G solvation = -31248.710652 eV Core-core repulsion = 27241.164764 eV Total energy + Delta-G solvation = -4007.545888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.21810 -40.61763 -39.54525 -37.69064 -36.13424 -34.75807 -34.37062 -34.06106 -31.72544 -30.05920 -29.54534 -28.54431 -27.77515 -27.55802 -26.45491 -24.67544 -23.15794 -22.03922 -21.62271 -21.05562 -19.78508 -19.15990 -18.28652 -18.19242 -17.26149 -17.11444 -16.89457 -16.59019 -16.34783 -16.12246 -15.66394 -15.48122 -15.15380 -14.98764 -14.78278 -14.39722 -14.26599 -14.00059 -13.99669 -13.83451 -13.80423 -13.59392 -13.35596 -13.17973 -13.08199 -12.91014 -12.81249 -12.55274 -12.34080 -12.30526 -12.15548 -12.08484 -11.89501 -11.87303 -11.83393 -11.68737 -10.83581 -10.80009 -10.41289 -9.56235 -9.49983 -9.41308 -8.92068 -7.86719 -5.28631 0.41685 0.48757 1.41605 1.42769 1.53802 1.58502 1.85932 2.43676 2.72712 2.83176 3.25459 3.39438 3.59550 3.70237 3.73718 3.84709 3.85879 3.94671 3.98104 4.09559 4.21412 4.23379 4.32757 4.37677 4.41605 4.46332 4.48411 4.52377 4.59690 4.67629 4.70148 4.77005 4.78975 4.85948 4.87385 4.99092 5.00077 5.05922 5.07156 5.27973 5.35646 5.36425 5.45870 5.61739 5.62611 5.65564 5.65957 5.73454 6.14824 6.17908 6.27119 6.43120 7.04074 7.17269 7.70230 8.31546 9.17724 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010894 B = 0.003450 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.563497 B = 8113.988224 C = 9799.957839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.134 4.134 4 C -0.093 4.093 5 C -0.110 4.110 6 C -0.125 4.125 7 C -0.068 4.068 8 C -0.091 4.091 9 C 0.501 3.499 10 O -0.561 6.561 11 N -0.595 5.595 12 C 0.071 3.929 13 C 0.048 3.952 14 O -0.373 6.373 15 C 0.086 3.914 16 H 0.121 0.879 17 C 0.151 3.849 18 N -0.621 5.621 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.060 4.060 22 N -0.946 5.946 23 Si 0.981 3.019 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.285 1.285 27 C 0.127 3.873 28 C 0.125 3.875 29 H 0.083 0.917 30 C -0.135 4.135 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.149 0.851 44 H 0.029 0.971 45 H 0.062 0.938 46 H -0.005 1.005 47 H 0.249 0.751 48 H 0.018 0.982 49 H 0.046 0.954 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 15.176 -17.682 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.093 4.093 5 C -0.166 4.166 6 C -0.143 4.143 7 C -0.068 4.068 8 C -0.130 4.130 9 C 0.291 3.709 10 O -0.440 6.440 11 N -0.329 5.329 12 C -0.050 4.050 13 C -0.029 4.029 14 O -0.290 6.290 15 C 0.027 3.973 16 H 0.138 0.862 17 C 0.026 3.974 18 N -0.349 5.349 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.253 4.253 22 N -0.595 5.595 23 Si 0.809 3.191 24 H -0.197 1.197 25 H -0.215 1.215 26 H -0.212 1.212 27 C 0.001 3.999 28 C 0.020 3.980 29 H 0.101 0.899 30 C -0.154 4.154 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.167 0.833 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.013 0.987 47 H 0.059 0.941 48 H 0.036 0.964 49 H 0.063 0.937 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.610 15.236 -17.114 23.590 hybrid contribution -1.335 -0.591 1.049 1.798 sum 4.275 14.646 -16.065 22.155 Atomic orbital electron populations 1.20812 0.89993 1.02985 1.03120 1.20158 0.97188 0.93074 0.99008 1.21153 0.93907 0.97909 1.02224 1.20225 0.94148 0.96217 0.98679 1.20806 0.99766 0.92811 1.03233 1.21053 1.00186 0.91541 1.01542 1.19440 0.93507 0.94421 0.99448 1.20797 1.03934 0.95899 0.92350 1.21307 0.76683 0.80296 0.92579 1.90683 1.50779 1.55063 1.47475 1.46871 1.57868 1.22249 1.05932 1.21982 1.03735 0.91816 0.87502 1.22565 0.98621 0.95447 0.86224 1.86853 1.51408 1.74561 1.16144 1.22700 0.96379 0.89493 0.88763 0.86186 1.21782 0.88020 0.91868 0.95778 1.44539 1.30637 1.01277 1.58473 1.19391 1.02688 0.92433 1.22798 0.91024 1.25618 1.02428 0.95055 1.02203 1.70115 1.41630 0.98001 1.49749 0.84978 0.78512 0.77734 0.77897 1.19653 1.21472 1.21199 1.21796 0.95065 0.87421 0.95593 1.21234 0.96912 0.97550 0.82325 0.89949 1.21035 0.94086 0.98017 1.02214 0.89707 0.92329 0.90581 0.84462 0.89699 0.90882 0.91312 0.85082 0.84443 0.86253 0.87281 0.87705 0.83348 0.95235 0.91982 0.98704 0.94113 0.96444 0.93675 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 10.01 71.23 0.71 -1.45 16 2 C -0.09 -2.28 5.88 -19.87 -0.12 -2.40 16 3 C -0.13 -2.95 9.36 22.27 0.21 -2.74 16 4 C -0.09 -2.00 5.88 -19.87 -0.12 -2.12 16 5 C -0.11 -1.63 10.01 71.23 0.71 -0.92 16 6 C -0.13 -2.91 9.36 22.27 0.21 -2.70 16 7 C -0.07 -1.70 4.37 -19.87 -0.09 -1.79 16 8 C -0.09 -1.92 4.41 29.10 0.13 -1.80 16 9 C 0.50 15.84 7.04 87.66 0.62 16.46 16 10 O -0.56 -23.07 13.05 -3.02 -0.04 -23.11 16 11 N -0.60 -18.41 3.09 -807.35 -2.50 -20.90 16 12 C 0.07 1.51 5.85 86.26 0.51 2.02 16 13 C 0.05 1.23 6.73 71.58 0.48 1.71 16 14 O -0.37 -12.58 10.25 -145.84 -1.49 -14.08 16 15 C 0.09 3.40 3.91 30.90 0.12 3.52 16 16 H 0.12 4.50 8.14 -2.39 -0.02 4.48 16 17 C 0.15 7.75 5.26 86.72 0.46 8.20 16 18 N -0.62 -34.50 3.39 -696.22 -2.36 -36.85 16 19 C -0.24 -14.67 10.25 84.03 0.86 -13.81 16 20 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.06 -3.54 5.48 84.86 0.47 -3.07 16 22 N -0.95 -57.63 10.18 21.65 0.22 -57.41 16 23 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 27 C 0.13 6.10 6.06 86.63 0.52 6.62 16 28 C 0.13 4.76 3.34 45.56 0.15 4.91 16 29 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 30 C -0.14 -3.63 9.36 22.27 0.21 -3.42 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 33 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 34 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 37 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 38 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.14 1.88 8.03 -2.39 -0.02 1.86 16 40 H 0.12 2.09 7.06 -2.39 -0.02 2.07 16 41 H 0.11 1.73 6.33 -2.39 -0.02 1.72 16 42 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.15 2.48 8.14 -2.38 -0.02 2.46 16 44 H 0.03 0.94 6.73 -2.38 -0.02 0.92 16 45 H 0.06 3.61 6.25 -2.39 -0.01 3.60 16 46 H 0.00 -0.27 6.47 -2.38 -0.02 -0.29 16 47 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 48 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 49 H 0.05 2.36 5.18 -2.39 -0.01 2.35 16 50 H 0.11 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -79.35 389.11 2.84 -76.52 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.93 Total: 19.18 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.04 Total: 7.22 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -4.63 Total: -115.17 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.53 Total: -37.18 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -79.35 2.84 -76.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083183000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.391 kcal (2) G-P(sol) polarization free energy of solvation -79.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds