Wall clock time and date at job start Wed Apr 1 2020 04:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38256 * 119.99820 * 2 1 4 4 C 1.38213 * 119.99668 * 180.28098 * 3 2 1 5 5 C 1.38256 * 120.00014 * 359.74178 * 4 3 2 6 6 C 1.38211 * 120.00000 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99890 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.47249 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47266 * 60.02471 * 7 6 5 10 10 C 1.50707 * 109.47279 * 300.02330 * 7 6 5 11 11 O 1.21286 * 119.99572 * 89.29085 * 10 7 6 12 12 N 1.34770 * 119.99926 * 269.28991 * 10 7 6 13 13 C 1.47041 * 120.12296 * 4.88484 * 12 10 7 14 14 C 1.53951 * 107.14341 * 130.18158 * 13 12 10 15 15 O 1.42649 * 108.29912 * 55.82700 * 14 13 12 16 16 C 1.42773 * 115.68897 * 295.42141 * 15 14 13 17 17 H 1.08997 * 112.73871 * 290.33567 * 16 15 14 18 18 C 1.55405 * 107.09082 * 166.04641 * 16 15 14 19 19 N 1.47474 * 104.78513 * 281.69283 * 18 16 15 20 20 C 1.36940 * 125.68922 * 155.56508 * 19 18 16 21 21 H 1.07996 * 120.00253 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99676 * 0.02562 * 20 19 18 23 23 N 1.31620 * 120.00319 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99880 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47115 * 59.99959 * 24 22 20 26 26 H 1.48506 * 109.47339 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47133 * 299.99665 * 24 22 20 28 28 C 1.48444 * 108.74959 * 334.92706 * 19 18 16 29 29 C 1.45669 * 120.11389 * 185.16001 * 12 10 7 30 30 H 1.09001 * 109.95760 * 345.46023 * 29 12 10 31 31 C 1.38210 * 119.99696 * 179.76555 * 2 1 3 32 32 H 1.09003 * 109.47144 * 270.23161 * 1 2 3 33 33 H 1.08999 * 109.47359 * 30.23578 * 1 2 3 34 34 H 1.09003 * 109.47022 * 150.23461 * 1 2 3 35 35 H 1.08004 * 120.00226 * 359.97438 * 3 2 1 36 36 H 1.07996 * 119.99795 * 179.72481 * 4 3 2 37 37 H 1.08005 * 119.99762 * 179.97438 * 5 4 3 38 38 H 1.09006 * 109.47326 * 55.47451 * 9 7 6 39 39 H 1.09002 * 109.47658 * 175.47145 * 9 7 6 40 40 H 1.09002 * 109.47528 * 295.47426 * 9 7 6 41 41 H 1.08996 * 109.88405 * 249.70867 * 13 12 10 42 42 H 1.09007 * 109.87837 * 10.77743 * 13 12 10 43 43 H 1.08997 * 109.82651 * 296.06872 * 14 13 12 44 44 H 1.09004 * 109.62464 * 175.46437 * 14 13 12 45 45 H 1.09002 * 110.37111 * 40.51998 * 18 16 15 46 46 H 1.09002 * 110.37568 * 162.74896 * 18 16 15 47 47 H 0.97003 * 120.00076 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.71858 * 242.88816 * 28 19 18 49 49 H 1.08994 * 109.81918 * 121.25066 * 28 19 18 50 50 H 1.07994 * 120.00489 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0059 5 6 4.2717 0.0000 -0.0063 6 6 3.5806 -1.1969 -0.0004 7 6 4.3341 -2.5020 -0.0015 8 1 3.6258 -3.3306 0.0033 9 6 5.2195 -2.5808 1.2437 10 6 5.1948 -2.5842 -1.2359 11 8 6.3270 -2.1498 -1.2157 12 7 4.7064 -3.1403 -2.3621 13 6 3.3015 -3.5702 -2.4237 14 6 2.7014 -2.9770 -3.7113 15 8 3.5016 -3.3992 -4.8142 16 6 4.8455 -2.9174 -4.8240 17 1 4.9079 -1.8466 -5.0177 18 6 5.6245 -3.7585 -5.8733 19 7 5.9113 -5.0356 -5.1940 20 6 6.1428 -6.2352 -5.8127 21 1 6.3441 -7.1171 -5.2228 22 6 6.1188 -6.3175 -7.1982 23 7 5.8730 -5.2428 -7.9172 24 14 6.4339 -7.9539 -8.0422 25 1 5.4129 -8.9403 -7.6064 26 1 6.3536 -7.7752 -9.5143 27 1 7.7863 -8.4469 -7.6770 28 6 5.9232 -4.8041 -3.7278 29 6 5.5699 -3.3232 -3.5209 30 1 6.4806 -2.7360 -3.4026 31 6 2.1980 -1.1970 0.0049 32 1 -0.3633 0.0042 1.0277 33 1 -0.3634 0.8878 -0.5175 34 1 -0.3633 -0.8921 -0.5102 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1326 -0.0104 37 1 5.3517 0.0000 -0.0114 38 1 4.6070 -2.4409 2.1345 39 1 5.7028 -3.5569 1.2848 40 1 5.9795 -1.8007 1.1992 41 1 3.2478 -4.6585 -2.4535 42 1 2.7608 -3.1954 -1.5546 43 1 2.7024 -1.8886 -3.6523 44 1 1.6806 -3.3373 -3.8392 45 1 5.0086 -3.9282 -6.7565 46 1 6.5520 -3.2566 -6.1491 47 1 5.8566 -5.3003 -8.8854 48 1 6.9091 -5.0129 -3.3124 49 1 5.1756 -5.4355 -3.2479 50 1 1.6581 -2.1322 0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083208862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:48 Heat of formation + Delta-G solvation = -15.457709 kcal Electronic energy + Delta-G solvation = -31624.080870 eV Core-core repulsion = 27617.301183 eV Total energy + Delta-G solvation = -4006.779687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.83448 -39.53680 -38.26835 -35.65030 -34.69715 -34.49843 -32.55544 -32.11032 -29.90317 -29.73294 -27.79631 -27.45926 -27.07238 -25.05300 -23.99154 -23.23679 -22.44911 -21.61987 -20.33039 -19.77974 -18.32127 -17.45033 -16.99779 -16.86819 -16.41052 -15.75710 -15.46370 -15.21573 -15.02706 -14.62358 -14.45057 -14.20455 -14.05223 -13.76936 -13.58995 -13.43237 -13.26602 -12.91141 -12.66007 -12.59698 -12.45822 -12.21893 -12.06190 -11.89272 -11.77889 -11.59807 -11.22266 -11.17313 -11.12326 -11.00540 -10.89144 -10.73522 -10.62164 -10.16899 -9.86072 -9.79864 -9.53363 -9.47036 -8.97465 -8.76168 -8.66164 -8.21544 -6.83282 -5.62816 -3.03977 1.09722 1.17966 2.66269 3.00240 3.43614 3.47312 3.48860 3.53117 4.20215 4.38963 4.44068 4.51985 4.60666 4.66387 4.85399 4.90745 4.94836 5.01220 5.09172 5.19762 5.24798 5.26138 5.31804 5.32447 5.40082 5.43838 5.51180 5.55256 5.60662 5.67900 5.69054 5.74171 5.81617 5.87059 5.89255 5.92025 6.03273 6.10067 6.28504 6.29095 6.35209 6.39245 6.50058 6.63416 6.79195 6.85603 7.25729 7.48512 7.59129 7.75382 7.92523 8.24373 8.38121 9.22204 9.82539 10.46493 11.41768 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.002938 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.589860 B = 9527.859371 C =10102.431379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.121 4.121 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.071 4.071 7 C -0.072 4.072 8 H 0.098 0.902 9 C -0.131 4.131 10 C 0.523 3.477 11 O -0.538 6.538 12 N -0.595 5.595 13 C 0.070 3.930 14 C 0.049 3.951 15 O -0.352 6.352 16 C 0.055 3.945 17 H 0.069 0.931 18 C 0.162 3.838 19 N -0.596 5.596 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.923 5.923 24 Si 0.916 3.084 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.134 3.866 29 C 0.099 3.901 30 H 0.104 0.896 31 C -0.114 4.114 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.099 0.901 45 H 0.123 0.877 46 H 0.029 0.971 47 H 0.253 0.747 48 H 0.029 0.971 49 H 0.029 0.971 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.007 11.593 18.311 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.132 4.132 5 C -0.127 4.127 6 C -0.071 4.071 7 C -0.093 4.093 8 H 0.116 0.884 9 C -0.189 4.189 10 C 0.310 3.690 11 O -0.415 6.415 12 N -0.327 5.327 13 C -0.053 4.053 14 C -0.029 4.029 15 O -0.270 6.270 16 C -0.005 4.005 17 H 0.087 0.913 18 C 0.036 3.964 19 N -0.322 5.322 20 C -0.347 4.347 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.571 5.571 24 Si 0.747 3.253 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.007 3.993 29 C -0.005 4.005 30 H 0.122 0.878 31 C -0.132 4.132 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.117 0.883 45 H 0.141 0.859 46 H 0.047 0.953 47 H 0.064 0.936 48 H 0.047 0.953 49 H 0.047 0.953 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.453 11.592 17.934 23.776 hybrid contribution 0.250 -0.673 -0.141 0.732 sum -10.203 10.919 17.794 23.236 Atomic orbital electron populations 1.20793 0.91076 1.02945 1.02268 1.19867 0.96060 0.92992 0.99684 1.21051 0.94259 0.97512 1.01109 1.21137 0.94264 0.97985 0.99785 1.21131 1.00603 0.91781 0.99190 1.19438 0.93289 0.93672 1.00732 1.20345 0.97827 0.96507 0.94633 0.88423 1.21672 0.99242 1.03310 0.94647 1.20428 0.87376 0.77203 0.83956 1.90668 1.19570 1.47483 1.83750 1.47707 1.11294 1.60397 1.13322 1.22681 0.81641 1.01046 0.99968 1.22879 0.95408 0.98059 0.86552 1.88011 1.22522 1.72951 1.43538 1.24144 0.82325 0.97549 0.96443 0.91287 1.22125 0.95983 0.83649 0.94593 1.44617 1.83283 1.05914 0.98407 1.19003 1.40622 0.85655 0.89464 0.90532 1.24762 1.02224 0.97583 0.95978 1.69721 1.55966 1.26475 1.04970 0.86125 0.77964 0.82746 0.78466 1.21198 1.21567 1.21285 1.21585 0.97878 0.91947 0.87848 1.22338 0.94320 0.99009 0.84792 0.87761 1.20909 0.93013 0.97795 1.01503 0.91228 0.91535 0.91380 0.86176 0.85980 0.85471 0.91756 0.91886 0.91032 0.90120 0.89358 0.93457 0.88344 0.85907 0.95280 0.93597 0.95320 0.95272 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.09 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 4 C -0.11 -1.13 10.05 -39.58 -0.40 -1.52 16 5 C -0.11 -1.25 8.86 -39.58 -0.35 -1.60 16 6 C -0.07 -0.77 4.60 -104.63 -0.48 -1.25 16 7 C -0.07 -0.81 2.11 -92.92 -0.20 -1.01 16 8 H 0.10 0.93 6.19 -51.93 -0.32 0.61 16 9 C -0.13 -1.37 8.63 37.16 0.32 -1.04 16 10 C 0.52 8.05 6.34 -10.98 -0.07 7.98 16 11 O -0.54 -9.95 15.20 5.55 0.08 -9.86 16 12 N -0.59 -9.53 2.71 -164.41 -0.45 -9.98 16 13 C 0.07 0.92 6.07 -3.25 -0.02 0.90 16 14 C 0.05 0.71 7.04 37.65 0.26 0.97 16 15 O -0.35 -7.01 10.11 -35.23 -0.36 -7.37 16 16 C 0.05 1.11 4.13 -24.66 -0.10 1.01 16 17 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 18 C 0.16 4.01 5.47 -2.23 -0.01 4.00 16 19 N -0.60 -15.61 3.43 -168.98 -0.58 -16.19 16 20 C -0.22 -6.20 10.29 -15.06 -0.15 -6.36 16 21 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -27.02 10.09 55.49 0.56 -26.46 16 24 Si 0.92 22.30 29.55 -169.99 -5.02 17.28 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.13 2.97 7.00 -2.64 -0.02 2.95 16 29 C 0.10 1.93 3.06 -67.25 -0.21 1.72 16 30 H 0.10 2.13 7.03 -51.93 -0.37 1.77 16 31 C -0.11 -1.06 8.51 -39.58 -0.34 -1.40 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.13 1.57 7.34 -52.48 -0.38 1.18 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.83 7.10 -51.93 -0.37 0.46 16 41 H 0.08 1.12 7.59 -51.93 -0.39 0.73 16 42 H 0.09 0.88 4.30 -51.93 -0.22 0.66 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.12 3.44 5.86 -51.93 -0.30 3.14 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.03 0.64 7.28 -51.93 -0.38 0.27 16 50 H 0.12 0.90 7.48 -52.49 -0.39 0.51 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -32.92 389.37 -10.13 -43.06 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.75 Total: 1.88 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.49 Total: 1.77 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.47 Total: -52.63 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.27 Total: -17.23 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.92 -10.13 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083208862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.598 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds