Wall clock time and date at job start Wed Apr 1 2020 04:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38256 * 119.99820 * 2 1 4 4 C 1.38213 * 119.99668 * 180.28098 * 3 2 1 5 5 C 1.38256 * 120.00014 * 359.74178 * 4 3 2 6 6 C 1.38211 * 120.00000 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99890 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.47249 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47266 * 60.02471 * 7 6 5 10 10 C 1.50707 * 109.47279 * 300.02330 * 7 6 5 11 11 O 1.21286 * 119.99572 * 89.29085 * 10 7 6 12 12 N 1.34770 * 119.99926 * 269.28991 * 10 7 6 13 13 C 1.47041 * 120.12296 * 4.88484 * 12 10 7 14 14 C 1.53951 * 107.14341 * 130.18158 * 13 12 10 15 15 O 1.42649 * 108.29912 * 55.82700 * 14 13 12 16 16 C 1.42773 * 115.68897 * 295.42141 * 15 14 13 17 17 H 1.08997 * 112.73871 * 290.33567 * 16 15 14 18 18 C 1.55405 * 107.09082 * 166.04641 * 16 15 14 19 19 N 1.47474 * 104.78513 * 281.69283 * 18 16 15 20 20 C 1.36940 * 125.68922 * 155.56508 * 19 18 16 21 21 H 1.07996 * 120.00253 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99676 * 0.02562 * 20 19 18 23 23 N 1.31620 * 120.00319 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99880 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47115 * 59.99959 * 24 22 20 26 26 H 1.48506 * 109.47339 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47133 * 299.99665 * 24 22 20 28 28 C 1.48444 * 108.74959 * 334.92706 * 19 18 16 29 29 C 1.45669 * 120.11389 * 185.16001 * 12 10 7 30 30 H 1.09001 * 109.95760 * 345.46023 * 29 12 10 31 31 C 1.38210 * 119.99696 * 179.76555 * 2 1 3 32 32 H 1.09003 * 109.47144 * 270.23161 * 1 2 3 33 33 H 1.08999 * 109.47359 * 30.23578 * 1 2 3 34 34 H 1.09003 * 109.47022 * 150.23461 * 1 2 3 35 35 H 1.08004 * 120.00226 * 359.97438 * 3 2 1 36 36 H 1.07996 * 119.99795 * 179.72481 * 4 3 2 37 37 H 1.08005 * 119.99762 * 179.97438 * 5 4 3 38 38 H 1.09006 * 109.47326 * 55.47451 * 9 7 6 39 39 H 1.09002 * 109.47658 * 175.47145 * 9 7 6 40 40 H 1.09002 * 109.47528 * 295.47426 * 9 7 6 41 41 H 1.08996 * 109.88405 * 249.70867 * 13 12 10 42 42 H 1.09007 * 109.87837 * 10.77743 * 13 12 10 43 43 H 1.08997 * 109.82651 * 296.06872 * 14 13 12 44 44 H 1.09004 * 109.62464 * 175.46437 * 14 13 12 45 45 H 1.09002 * 110.37111 * 40.51998 * 18 16 15 46 46 H 1.09002 * 110.37568 * 162.74896 * 18 16 15 47 47 H 0.97003 * 120.00076 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.71858 * 242.88816 * 28 19 18 49 49 H 1.08994 * 109.81918 * 121.25066 * 28 19 18 50 50 H 1.07994 * 120.00489 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0059 5 6 4.2717 0.0000 -0.0063 6 6 3.5806 -1.1969 -0.0004 7 6 4.3341 -2.5020 -0.0015 8 1 3.6258 -3.3306 0.0033 9 6 5.2195 -2.5808 1.2437 10 6 5.1948 -2.5842 -1.2359 11 8 6.3270 -2.1498 -1.2157 12 7 4.7064 -3.1403 -2.3621 13 6 3.3015 -3.5702 -2.4237 14 6 2.7014 -2.9770 -3.7113 15 8 3.5016 -3.3992 -4.8142 16 6 4.8455 -2.9174 -4.8240 17 1 4.9079 -1.8466 -5.0177 18 6 5.6245 -3.7585 -5.8733 19 7 5.9113 -5.0356 -5.1940 20 6 6.1428 -6.2352 -5.8127 21 1 6.3441 -7.1171 -5.2228 22 6 6.1188 -6.3175 -7.1982 23 7 5.8730 -5.2428 -7.9172 24 14 6.4339 -7.9539 -8.0422 25 1 5.4129 -8.9403 -7.6064 26 1 6.3536 -7.7752 -9.5143 27 1 7.7863 -8.4469 -7.6770 28 6 5.9232 -4.8041 -3.7278 29 6 5.5699 -3.3232 -3.5209 30 1 6.4806 -2.7360 -3.4026 31 6 2.1980 -1.1970 0.0049 32 1 -0.3633 0.0042 1.0277 33 1 -0.3634 0.8878 -0.5175 34 1 -0.3633 -0.8921 -0.5102 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1326 -0.0104 37 1 5.3517 0.0000 -0.0114 38 1 4.6070 -2.4409 2.1345 39 1 5.7028 -3.5569 1.2848 40 1 5.9795 -1.8007 1.1992 41 1 3.2478 -4.6585 -2.4535 42 1 2.7608 -3.1954 -1.5546 43 1 2.7024 -1.8886 -3.6523 44 1 1.6806 -3.3373 -3.8392 45 1 5.0086 -3.9282 -6.7565 46 1 6.5520 -3.2566 -6.1491 47 1 5.8566 -5.3003 -8.8854 48 1 6.9091 -5.0129 -3.3124 49 1 5.1756 -5.4355 -3.2479 50 1 1.6581 -2.1322 0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083208862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:47 Heat of formation + Delta-G solvation = -34.680226 kcal Electronic energy + Delta-G solvation = -31624.914421 eV Core-core repulsion = 27617.301183 eV Total energy + Delta-G solvation = -4007.613238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.04480 -40.56585 -39.51126 -37.37218 -36.03207 -35.46738 -34.11216 -33.14669 -31.42384 -30.65914 -29.28295 -29.19442 -27.66412 -26.66117 -25.32597 -24.49669 -23.25277 -22.63454 -22.21176 -20.99571 -19.56714 -19.04245 -18.56108 -17.92134 -17.59975 -16.93503 -16.74229 -16.60395 -16.21128 -16.13674 -15.60634 -15.45116 -15.31434 -14.93261 -14.66305 -14.52474 -14.30845 -14.01959 -13.95148 -13.75384 -13.54536 -13.38756 -13.10823 -13.05469 -12.95474 -12.75975 -12.68501 -12.65465 -12.61416 -12.36145 -12.14042 -12.08419 -11.96808 -11.82040 -11.72309 -11.36324 -11.04275 -10.85656 -10.77342 -9.72668 -9.60452 -9.47774 -8.93499 -7.77343 -5.22447 0.35637 0.47379 1.46206 1.48263 1.51155 1.57348 1.75287 2.50094 2.79096 2.81348 3.33355 3.37102 3.53031 3.56690 3.62520 3.82439 3.85221 3.95770 4.03292 4.08383 4.11948 4.18324 4.22662 4.29121 4.30797 4.38570 4.52982 4.55293 4.57774 4.71988 4.74485 4.78342 4.85786 4.87362 4.89473 4.90250 4.92680 5.01233 5.16145 5.21408 5.26392 5.35647 5.40266 5.43339 5.56587 5.64112 5.70314 5.71615 6.10375 6.21914 6.28240 6.44609 7.01824 7.07157 7.71934 8.36322 9.24923 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.002938 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.589860 B = 9527.859371 C =10102.431379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.124 4.124 5 C -0.131 4.131 6 C -0.081 4.081 7 C -0.061 4.061 8 H 0.125 0.875 9 C -0.130 4.130 10 C 0.519 3.481 11 O -0.576 6.576 12 N -0.597 5.597 13 C 0.071 3.929 14 C 0.043 3.957 15 O -0.382 6.382 16 C 0.074 3.926 17 H 0.085 0.915 18 C 0.165 3.835 19 N -0.614 5.614 20 C -0.240 4.240 21 H 0.080 0.920 22 C -0.063 4.063 23 N -0.947 5.947 24 Si 0.984 3.016 25 H -0.276 1.276 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.137 3.863 29 C 0.114 3.886 30 H 0.088 0.912 31 C -0.114 4.114 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.057 0.943 44 H 0.130 0.870 45 H 0.090 0.910 46 H 0.006 0.994 47 H 0.249 0.751 48 H 0.020 0.980 49 H 0.034 0.966 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 11.428 20.214 27.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.082 4.082 7 C -0.082 4.082 8 H 0.143 0.857 9 C -0.187 4.187 10 C 0.309 3.691 11 O -0.455 6.455 12 N -0.329 5.329 13 C -0.050 4.050 14 C -0.034 4.034 15 O -0.300 6.300 16 C 0.014 3.986 17 H 0.102 0.898 18 C 0.039 3.961 19 N -0.341 5.341 20 C -0.369 4.369 21 H 0.097 0.903 22 C -0.256 4.256 23 N -0.597 5.597 24 Si 0.812 3.188 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.011 3.989 29 C 0.009 3.991 30 H 0.106 0.894 31 C -0.132 4.132 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.146 0.854 43 H 0.075 0.925 44 H 0.148 0.852 45 H 0.108 0.892 46 H 0.024 0.976 47 H 0.059 0.941 48 H 0.037 0.963 49 H 0.052 0.948 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.452 11.433 19.884 26.590 hybrid contribution 1.141 -0.546 -0.672 1.432 sum -12.311 10.887 19.212 25.282 Atomic orbital electron populations 1.20849 0.89081 1.03809 1.03239 1.20230 0.97529 0.92647 0.98362 1.21356 0.93861 0.98798 1.00290 1.21319 0.95082 0.97914 0.99842 1.21110 0.99812 0.93060 1.00950 1.19418 0.94060 0.92783 1.01913 1.20364 0.97639 0.97972 0.92254 0.85697 1.21675 0.99148 1.02519 0.95358 1.21263 0.87360 0.75806 0.84656 1.90653 1.21586 1.48843 1.84383 1.47777 1.12074 1.60608 1.12410 1.22886 0.80053 1.01012 1.01087 1.23241 0.95943 0.98941 0.85248 1.87939 1.22139 1.73670 1.46279 1.23742 0.82721 0.97212 0.94926 0.89768 1.21834 0.95113 0.84048 0.95085 1.44860 1.83298 1.05774 1.00181 1.19369 1.40734 0.86670 0.90122 0.90261 1.25629 1.02306 1.01057 0.96582 1.69984 1.56630 1.28316 1.04727 0.85077 0.78067 0.78750 0.76922 1.20170 1.21746 1.20606 1.21621 0.97470 0.94058 0.85765 1.21854 0.94465 0.96608 0.86189 0.89360 1.21179 0.92180 0.99211 1.00642 0.90104 0.90904 0.90372 0.84231 0.85088 0.87641 0.89296 0.92062 0.92925 0.90373 0.85354 0.92465 0.85198 0.89175 0.97643 0.94137 0.96253 0.94755 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 71.24 0.71 -0.23 16 2 C -0.09 -1.22 5.88 -19.87 -0.12 -1.33 16 3 C -0.13 -1.91 9.70 22.27 0.22 -1.70 16 4 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 5 C -0.13 -2.91 8.86 22.27 0.20 -2.72 16 6 C -0.08 -1.57 4.60 -19.87 -0.09 -1.66 16 7 C -0.06 -1.25 2.11 -12.29 -0.03 -1.27 16 8 H 0.13 1.84 6.19 -2.38 -0.01 1.82 16 9 C -0.13 -2.52 8.63 71.98 0.62 -1.89 16 10 C 0.52 15.56 6.34 87.66 0.56 16.11 16 11 O -0.58 -21.76 15.20 -3.05 -0.05 -21.81 16 12 N -0.60 -18.41 2.71 -792.47 -2.15 -20.56 16 13 C 0.07 1.67 6.07 86.60 0.53 2.20 16 14 C 0.04 1.12 7.04 72.30 0.51 1.62 16 15 O -0.38 -14.88 10.11 -148.98 -1.51 -16.39 16 16 C 0.07 3.02 4.13 31.94 0.13 3.15 16 17 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 18 C 0.16 8.54 5.47 87.02 0.48 9.01 16 19 N -0.61 -33.22 3.43 -688.54 -2.36 -35.58 16 20 C -0.24 -13.90 10.29 84.03 0.86 -13.04 16 21 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 22 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 23 N -0.95 -57.27 10.09 21.65 0.22 -57.05 16 24 Si 0.98 46.40 29.55 68.60 2.03 48.42 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 28 C 0.14 6.20 7.00 86.22 0.60 6.80 16 29 C 0.11 4.50 3.06 45.88 0.14 4.64 16 30 H 0.09 3.75 7.03 -2.39 -0.02 3.74 16 31 C -0.11 -1.67 8.51 22.27 0.19 -1.48 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 34 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 35 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 36 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.11 2.74 7.34 -2.91 -0.02 2.71 16 38 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.05 1.22 7.10 -2.39 -0.02 1.21 16 41 H 0.08 1.93 7.59 -2.39 -0.02 1.91 16 42 H 0.13 1.96 4.30 -2.38 -0.01 1.95 16 43 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.09 5.30 5.86 -2.39 -0.01 5.29 16 46 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 48 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.03 1.51 7.28 -2.39 -0.02 1.50 16 50 H 0.15 1.34 7.48 -2.91 -0.02 1.32 16 Total: -1.00 -74.86 389.37 3.32 -71.55 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.94 Total: 18.47 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.20 Total: 12.95 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -4.29 Total: -113.20 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.55 Total: -38.20 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -74.86 3.32 -71.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083208862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.865 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds