Wall clock time and date at job start Wed Apr 1 2020 04:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38234 * 119.99172 * 2 1 4 4 C 1.38239 * 119.99692 * 180.27399 * 3 2 1 5 5 C 1.38243 * 119.99587 * 359.46411 * 4 3 2 6 6 C 1.50706 * 119.99879 * 180.27815 * 5 4 3 7 7 H 1.08993 * 109.46811 * 180.27451 * 6 5 4 8 8 C 1.52996 * 109.47035 * 300.27805 * 6 5 4 9 9 C 1.50694 * 109.46779 * 60.27529 * 6 5 4 10 10 O 1.21284 * 120.00406 * 337.73566 * 9 6 5 11 11 N 1.34784 * 119.99835 * 157.73335 * 9 6 5 12 12 C 1.44953 * 117.33579 * 5.87782 * 11 9 6 13 13 C 1.51963 * 111.93715 * 203.72849 * 12 11 9 14 14 O 1.41325 * 111.60687 * 319.69674 * 13 12 11 15 15 C 1.40849 * 118.30850 * 56.89457 * 14 13 12 16 16 H 1.09000 * 109.53577 * 188.63369 * 15 14 13 17 17 C 1.53905 * 110.30298 * 68.00987 * 15 14 13 18 18 N 1.46779 * 107.62375 * 221.40618 * 17 15 14 19 19 C 1.36941 * 125.35950 * 178.83034 * 18 17 15 20 20 H 1.08006 * 119.99553 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00186 * 0.02562 * 19 18 17 22 22 N 1.31617 * 119.99857 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99827 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46866 * 90.00536 * 23 21 19 25 25 H 1.48503 * 109.47186 * 210.00190 * 23 21 19 26 26 H 1.48495 * 109.47307 * 330.00714 * 23 21 19 27 27 C 1.46872 * 109.27495 * 358.80946 * 18 17 15 28 28 C 1.44550 * 117.33768 * 185.61371 * 11 9 6 29 29 H 1.09004 * 109.64020 * 286.47191 * 28 11 9 30 30 C 1.38228 * 120.00164 * 0.55570 * 5 4 3 31 31 C 1.38229 * 120.00032 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46584 * 90.01125 * 1 2 3 33 33 H 1.08997 * 109.46931 * 209.99894 * 1 2 3 34 34 H 1.08994 * 109.47606 * 330.00635 * 1 2 3 35 35 H 1.07994 * 120.00568 * 359.97438 * 3 2 1 36 36 H 1.08002 * 120.00385 * 179.72019 * 4 3 2 37 37 H 1.09008 * 109.47033 * 305.02392 * 8 6 5 38 38 H 1.08992 * 109.47729 * 65.02795 * 8 6 5 39 39 H 1.09002 * 109.47001 * 185.03353 * 8 6 5 40 40 H 1.09002 * 108.98919 * 324.35787 * 12 11 9 41 41 H 1.09002 * 108.99484 * 83.09899 * 12 11 9 42 42 H 1.09004 * 109.04976 * 80.23956 * 13 12 11 43 43 H 1.08999 * 109.05630 * 199.21623 * 13 12 11 44 44 H 1.08996 * 109.82496 * 340.92617 * 17 15 14 45 45 H 1.08998 * 109.82537 * 101.80387 * 17 15 14 46 46 H 0.97003 * 119.99942 * 179.97438 * 22 21 19 47 47 H 1.08997 * 110.06352 * 137.03448 * 27 18 17 48 48 H 1.08997 * 110.06351 * 258.50089 * 27 18 17 49 49 H 1.07998 * 120.00035 * 179.72269 * 30 5 4 50 50 H 1.07997 * 120.00393 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1974 -0.0057 5 6 4.2717 0.0002 -0.0003 6 6 5.7788 0.0003 -0.0002 7 1 6.1421 -1.0273 -0.0004 8 6 6.2888 0.7220 -1.2491 9 6 6.2809 0.7104 1.2305 10 8 5.5665 1.5027 1.8075 11 7 7.5239 0.4650 1.6901 12 6 8.3741 -0.3904 0.8860 13 6 9.4626 -1.0507 1.7158 14 8 10.0069 -0.1571 2.6658 15 6 9.1336 0.4483 3.5903 16 1 9.6690 1.2165 4.1483 17 6 8.5772 -0.6031 4.5669 18 7 7.1518 -0.3146 4.7657 19 6 6.2979 -1.0424 5.5508 20 1 5.2612 -0.7514 5.6348 21 6 6.7647 -2.1541 6.2385 22 7 8.0282 -2.5084 6.1364 23 14 5.6000 -3.1465 7.3100 24 1 4.9743 -4.2208 6.4978 25 1 6.3572 -3.7533 8.4341 26 1 4.5426 -2.2545 7.8497 27 6 6.7858 0.8779 3.9904 28 6 7.9025 1.0810 2.9418 29 1 8.0715 2.1470 2.7892 30 6 3.5807 -1.1970 -0.0007 31 6 2.1982 -1.1971 -0.0005 32 1 -0.3633 -0.0002 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5137 35 1 1.6581 2.1325 -0.0004 36 1 4.1204 2.1327 -0.0103 37 1 5.8539 0.2629 -2.1370 38 1 6.0008 1.7722 -1.2050 39 1 7.3751 0.6446 -1.2953 40 1 7.7621 -1.1647 0.4233 41 1 8.8393 0.2075 0.1023 42 1 9.0407 -1.9103 2.2367 43 1 10.2579 -1.3917 1.0530 44 1 8.6969 -1.6005 4.1439 45 1 9.1047 -0.5394 5.5186 46 1 8.3545 -3.2851 6.6173 47 1 5.8292 0.7210 3.4922 48 1 6.7276 1.7468 4.6459 49 1 4.1207 -2.1322 -0.0009 50 1 1.6583 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083251936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:00 Heat of formation + Delta-G solvation = -8.212488 kcal Electronic energy + Delta-G solvation = -31989.987751 eV Core-core repulsion = 27983.522240 eV Total energy + Delta-G solvation = -4006.465511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.98297 -39.48472 -38.19570 -35.97397 -34.85733 -34.48861 -32.36542 -31.18653 -30.76861 -29.97476 -27.94605 -27.36681 -26.74906 -24.85523 -23.85439 -23.23913 -22.62795 -21.45588 -20.42265 -19.54751 -18.47499 -17.46159 -16.91579 -16.56969 -16.28564 -15.51197 -15.34677 -15.03089 -14.89563 -14.79532 -14.55295 -14.12011 -13.95423 -13.79288 -13.62724 -13.34299 -13.22799 -12.96310 -12.75032 -12.33842 -12.26167 -12.13428 -12.05550 -11.90573 -11.73374 -11.47352 -11.29694 -11.06893 -10.90443 -10.86699 -10.82081 -10.60596 -10.58677 -10.27311 -10.08176 -9.71364 -9.36376 -8.93089 -8.72964 -8.59309 -8.41875 -8.16801 -6.79747 -5.70153 -3.03306 1.38968 1.55806 2.84629 3.13225 3.40651 3.46032 3.48356 3.85932 4.09968 4.50185 4.53500 4.59227 4.84176 4.89146 4.94765 4.99566 5.04878 5.14267 5.17261 5.27791 5.34672 5.38410 5.43295 5.50899 5.51336 5.55269 5.64160 5.66387 5.70003 5.72596 5.76592 5.81463 5.87019 5.98361 6.00889 6.08719 6.14767 6.19954 6.31362 6.50466 6.55264 6.68106 6.73225 6.84085 7.11230 7.14846 7.41637 7.50973 7.57171 7.74519 7.90710 8.26377 8.43913 9.23701 9.83823 10.47169 11.41231 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009191 B = 0.004484 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.626707 B = 6242.520647 C = 8327.644285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.126 4.126 4 C -0.074 4.074 5 C -0.076 4.076 6 C -0.073 4.073 7 H 0.100 0.900 8 C -0.137 4.137 9 C 0.516 3.484 10 O -0.520 6.520 11 N -0.584 5.584 12 C 0.076 3.924 13 C 0.057 3.943 14 O -0.370 6.370 15 C 0.069 3.931 16 H 0.109 0.891 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.924 5.924 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.119 3.881 28 C 0.111 3.889 29 H 0.072 0.928 30 C -0.105 4.105 31 C -0.125 4.125 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.252 0.748 47 H 0.073 0.927 48 H 0.026 0.974 49 H 0.120 0.880 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 4.593 -18.065 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.092 4.092 5 C -0.076 4.076 6 C -0.094 4.094 7 H 0.118 0.882 8 C -0.195 4.195 9 C 0.304 3.696 10 O -0.396 6.396 11 N -0.317 5.317 12 C -0.047 4.047 13 C -0.020 4.020 14 O -0.287 6.287 15 C 0.010 3.990 16 H 0.127 0.873 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.573 5.573 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.207 1.207 27 C -0.007 4.007 28 C 0.006 3.994 29 H 0.090 0.910 30 C -0.123 4.123 31 C -0.143 4.143 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.043 0.957 49 H 0.138 0.862 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.118 4.874 -17.577 18.699 hybrid contribution -0.726 -0.795 0.738 1.305 sum -4.844 4.079 -16.839 17.990 Atomic orbital electron populations 1.20773 0.91535 1.02712 1.01921 1.19891 0.95853 0.93325 0.99824 1.20978 0.94200 0.97312 1.01949 1.20954 0.93717 0.97771 0.96719 1.19306 0.93180 0.93635 1.01506 1.20319 0.93200 1.01368 0.94530 0.88244 1.21756 1.01253 1.00869 0.95586 1.20380 0.81103 0.82591 0.85538 1.90650 1.55811 1.35047 1.58141 1.46616 1.13773 1.49293 1.22015 1.21735 0.94073 0.94682 0.94247 1.22234 0.96038 0.92791 0.90956 1.86866 1.35765 1.61061 1.45058 1.22989 0.89659 0.96478 0.89908 0.87305 1.21659 0.84753 0.94853 0.95915 1.44224 1.05920 1.28988 1.53795 1.19052 0.91293 1.05443 1.19154 0.90498 1.24766 0.96431 0.98622 1.00619 1.69949 1.12919 1.28013 1.46369 0.86128 0.79718 0.80118 0.79918 1.21708 1.21638 1.20671 1.21942 0.97283 0.90650 0.90828 1.21788 0.97703 0.96018 0.83864 0.91044 1.21003 0.94310 0.97265 0.99764 1.20911 0.93982 0.97412 1.02021 0.91472 0.91673 0.91670 0.86378 0.85873 0.91268 0.91829 0.91681 0.89903 0.91739 0.92007 0.88016 0.92641 0.93062 0.93805 0.90921 0.95673 0.86196 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.09 -1.10 5.88 -104.62 -0.62 -1.71 16 3 C -0.13 -1.63 9.70 -39.58 -0.38 -2.02 16 4 C -0.07 -1.04 7.92 -39.58 -0.31 -1.35 16 5 C -0.08 -1.06 4.62 -104.62 -0.48 -1.55 16 6 C -0.07 -0.94 2.12 -92.93 -0.20 -1.14 16 7 H 0.10 1.17 5.91 -51.93 -0.31 0.86 16 8 C -0.14 -1.34 8.80 37.16 0.33 -1.02 16 9 C 0.52 8.65 6.06 -10.98 -0.07 8.58 16 10 O -0.52 -10.28 11.92 5.55 0.07 -10.22 16 11 N -0.58 -9.73 3.08 -168.52 -0.52 -10.24 16 12 C 0.08 1.00 5.37 -5.40 -0.03 0.97 16 13 C 0.06 0.84 6.72 36.63 0.25 1.08 16 14 O -0.37 -6.56 10.24 -34.45 -0.35 -6.91 16 15 C 0.07 1.33 3.82 -26.33 -0.10 1.23 16 16 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 17 C 0.15 3.76 5.02 -3.42 -0.02 3.74 16 18 N -0.60 -15.84 3.39 -171.21 -0.58 -16.42 16 19 C -0.22 -6.37 10.25 -15.06 -0.15 -6.53 16 20 H 0.08 2.21 7.83 -52.48 -0.41 1.79 16 21 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 22 N -0.92 -27.26 10.26 55.49 0.57 -26.69 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.12 2.73 6.29 -3.04 -0.02 2.71 16 28 C 0.11 2.10 3.38 -68.24 -0.23 1.87 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 C -0.11 -1.41 9.67 -39.58 -0.38 -1.80 16 31 C -0.13 -1.58 9.70 -39.58 -0.38 -1.97 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.12 1.73 7.02 -52.49 -0.37 1.36 16 37 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.06 0.66 7.56 -51.93 -0.39 0.26 16 39 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 40 H 0.08 0.93 5.71 -51.93 -0.30 0.63 16 41 H 0.06 0.69 7.24 -51.93 -0.38 0.32 16 42 H 0.06 1.06 6.81 -51.93 -0.35 0.71 16 43 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.49 5.74 -51.93 -0.30 1.19 16 45 H 0.05 1.39 7.48 -51.93 -0.39 1.01 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.07 1.79 5.12 -51.93 -0.27 1.53 16 48 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.12 1.43 7.95 -52.49 -0.42 1.01 16 50 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -33.63 380.95 -10.21 -43.84 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.57 Total: 3.21 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.54 Total: 0.08 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.53 Total: -53.36 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.29 Total: -17.13 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.63 -10.21 -43.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083251936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.627 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds