Wall clock time and date at job start Wed Apr 1 2020 04:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38234 * 119.99172 * 2 1 4 4 C 1.38239 * 119.99692 * 180.27399 * 3 2 1 5 5 C 1.38243 * 119.99587 * 359.46411 * 4 3 2 6 6 C 1.50706 * 119.99879 * 180.27815 * 5 4 3 7 7 H 1.08993 * 109.46811 * 180.27451 * 6 5 4 8 8 C 1.52996 * 109.47035 * 300.27805 * 6 5 4 9 9 C 1.50694 * 109.46779 * 60.27529 * 6 5 4 10 10 O 1.21284 * 120.00406 * 337.73566 * 9 6 5 11 11 N 1.34784 * 119.99835 * 157.73335 * 9 6 5 12 12 C 1.44953 * 117.33579 * 5.87782 * 11 9 6 13 13 C 1.51963 * 111.93715 * 203.72849 * 12 11 9 14 14 O 1.41325 * 111.60687 * 319.69674 * 13 12 11 15 15 C 1.40849 * 118.30850 * 56.89457 * 14 13 12 16 16 H 1.09000 * 109.53577 * 188.63369 * 15 14 13 17 17 C 1.53905 * 110.30298 * 68.00987 * 15 14 13 18 18 N 1.46779 * 107.62375 * 221.40618 * 17 15 14 19 19 C 1.36941 * 125.35950 * 178.83034 * 18 17 15 20 20 H 1.08006 * 119.99553 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00186 * 0.02562 * 19 18 17 22 22 N 1.31617 * 119.99857 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99827 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46866 * 90.00536 * 23 21 19 25 25 H 1.48503 * 109.47186 * 210.00190 * 23 21 19 26 26 H 1.48495 * 109.47307 * 330.00714 * 23 21 19 27 27 C 1.46872 * 109.27495 * 358.80946 * 18 17 15 28 28 C 1.44550 * 117.33768 * 185.61371 * 11 9 6 29 29 H 1.09004 * 109.64020 * 286.47191 * 28 11 9 30 30 C 1.38228 * 120.00164 * 0.55570 * 5 4 3 31 31 C 1.38229 * 120.00032 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46584 * 90.01125 * 1 2 3 33 33 H 1.08997 * 109.46931 * 209.99894 * 1 2 3 34 34 H 1.08994 * 109.47606 * 330.00635 * 1 2 3 35 35 H 1.07994 * 120.00568 * 359.97438 * 3 2 1 36 36 H 1.08002 * 120.00385 * 179.72019 * 4 3 2 37 37 H 1.09008 * 109.47033 * 305.02392 * 8 6 5 38 38 H 1.08992 * 109.47729 * 65.02795 * 8 6 5 39 39 H 1.09002 * 109.47001 * 185.03353 * 8 6 5 40 40 H 1.09002 * 108.98919 * 324.35787 * 12 11 9 41 41 H 1.09002 * 108.99484 * 83.09899 * 12 11 9 42 42 H 1.09004 * 109.04976 * 80.23956 * 13 12 11 43 43 H 1.08999 * 109.05630 * 199.21623 * 13 12 11 44 44 H 1.08996 * 109.82496 * 340.92617 * 17 15 14 45 45 H 1.08998 * 109.82537 * 101.80387 * 17 15 14 46 46 H 0.97003 * 119.99942 * 179.97438 * 22 21 19 47 47 H 1.08997 * 110.06352 * 137.03448 * 27 18 17 48 48 H 1.08997 * 110.06351 * 258.50089 * 27 18 17 49 49 H 1.07998 * 120.00035 * 179.72269 * 30 5 4 50 50 H 1.07997 * 120.00393 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1974 -0.0057 5 6 4.2717 0.0002 -0.0003 6 6 5.7788 0.0003 -0.0002 7 1 6.1421 -1.0273 -0.0004 8 6 6.2888 0.7220 -1.2491 9 6 6.2809 0.7104 1.2305 10 8 5.5665 1.5027 1.8075 11 7 7.5239 0.4650 1.6901 12 6 8.3741 -0.3904 0.8860 13 6 9.4626 -1.0507 1.7158 14 8 10.0069 -0.1571 2.6658 15 6 9.1336 0.4483 3.5903 16 1 9.6690 1.2165 4.1483 17 6 8.5772 -0.6031 4.5669 18 7 7.1518 -0.3146 4.7657 19 6 6.2979 -1.0424 5.5508 20 1 5.2612 -0.7514 5.6348 21 6 6.7647 -2.1541 6.2385 22 7 8.0282 -2.5084 6.1364 23 14 5.6000 -3.1465 7.3100 24 1 4.9743 -4.2208 6.4978 25 1 6.3572 -3.7533 8.4341 26 1 4.5426 -2.2545 7.8497 27 6 6.7858 0.8779 3.9904 28 6 7.9025 1.0810 2.9418 29 1 8.0715 2.1470 2.7892 30 6 3.5807 -1.1970 -0.0007 31 6 2.1982 -1.1971 -0.0005 32 1 -0.3633 -0.0002 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5137 35 1 1.6581 2.1325 -0.0004 36 1 4.1204 2.1327 -0.0103 37 1 5.8539 0.2629 -2.1370 38 1 6.0008 1.7722 -1.2050 39 1 7.3751 0.6446 -1.2953 40 1 7.7621 -1.1647 0.4233 41 1 8.8393 0.2075 0.1023 42 1 9.0407 -1.9103 2.2367 43 1 10.2579 -1.3917 1.0530 44 1 8.6969 -1.6005 4.1439 45 1 9.1047 -0.5394 5.5186 46 1 8.3545 -3.2851 6.6173 47 1 5.8292 0.7210 3.4922 48 1 6.7276 1.7468 4.6459 49 1 4.1207 -2.1322 -0.0009 50 1 1.6583 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083251936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:59 Heat of formation + Delta-G solvation = -28.627465 kcal Electronic energy + Delta-G solvation = -31990.873011 eV Core-core repulsion = 27983.522240 eV Total energy + Delta-G solvation = -4007.350771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.31282 -40.63499 -39.46107 -37.68144 -36.18179 -35.61842 -34.24052 -32.16992 -31.76424 -31.61566 -29.57331 -29.02192 -27.57851 -26.68031 -25.06381 -24.62098 -23.62348 -22.82663 -21.89460 -20.93081 -19.85243 -19.13291 -18.25973 -18.24307 -17.43256 -17.00269 -16.61720 -16.39193 -16.20452 -16.01701 -15.84896 -15.66100 -15.27327 -15.26090 -14.66247 -14.38584 -14.35640 -14.18088 -14.09699 -13.87938 -13.73847 -13.25977 -13.13092 -13.02357 -12.99806 -12.84075 -12.76041 -12.65677 -12.46601 -12.38371 -12.16929 -12.08226 -11.88583 -11.81525 -11.71217 -11.62034 -10.84304 -10.77229 -10.32855 -9.75587 -9.55334 -9.36141 -8.93885 -7.90651 -5.26981 0.39967 0.55292 1.39963 1.41579 1.50983 1.58530 1.88074 2.43159 2.74779 2.86783 3.26812 3.34518 3.56063 3.65191 3.68908 3.75132 3.88045 3.98097 4.06325 4.08648 4.13643 4.17276 4.23825 4.26511 4.38015 4.49686 4.54433 4.56024 4.60940 4.71955 4.81187 4.81692 4.84120 4.88479 4.92306 4.97558 5.00647 5.02131 5.20774 5.23608 5.30041 5.36290 5.45773 5.53166 5.61309 5.63606 5.72290 5.72733 6.13116 6.14229 6.27398 6.42601 7.04584 7.16090 7.70296 8.32201 9.18354 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009191 B = 0.004484 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.626707 B = 6242.520647 C = 8327.644285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.088 4.088 5 C -0.093 4.093 6 C -0.065 4.065 7 H 0.113 0.887 8 C -0.130 4.130 9 C 0.509 3.491 10 O -0.559 6.559 11 N -0.590 5.590 12 C 0.071 3.929 13 C 0.050 3.950 14 O -0.371 6.371 15 C 0.085 3.915 16 H 0.126 0.874 17 C 0.165 3.835 18 N -0.618 5.618 19 C -0.244 4.244 20 H 0.069 0.931 21 C -0.056 4.056 22 N -0.945 5.945 23 Si 0.975 3.025 24 H -0.284 1.284 25 H -0.288 1.288 26 H -0.275 1.275 27 C 0.119 3.881 28 C 0.123 3.877 29 H 0.090 0.910 30 C -0.120 4.120 31 C -0.136 4.136 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.028 0.972 43 H 0.147 0.853 44 H 0.027 0.973 45 H 0.014 0.986 46 H 0.249 0.751 47 H 0.055 0.945 48 H 0.018 0.982 49 H 0.131 0.869 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 4.239 -20.281 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.157 4.157 4 C -0.107 4.107 5 C -0.094 4.094 6 C -0.086 4.086 7 H 0.131 0.869 8 C -0.187 4.187 9 C 0.298 3.702 10 O -0.437 6.437 11 N -0.323 5.323 12 C -0.051 4.051 13 C -0.026 4.026 14 O -0.288 6.288 15 C 0.026 3.974 16 H 0.143 0.857 17 C 0.040 3.960 18 N -0.345 5.345 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.249 4.249 22 N -0.594 5.594 23 Si 0.803 3.197 24 H -0.211 1.211 25 H -0.214 1.214 26 H -0.200 1.200 27 C -0.007 4.007 28 C 0.018 3.982 29 H 0.107 0.893 30 C -0.138 4.138 31 C -0.154 4.154 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.046 0.954 43 H 0.165 0.835 44 H 0.045 0.955 45 H 0.032 0.968 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.036 0.964 49 H 0.149 0.851 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.268 4.521 -19.832 20.783 hybrid contribution -0.719 -0.705 1.430 1.750 sum -4.987 3.816 -18.401 19.443 Atomic orbital electron populations 1.20820 0.89402 1.03296 1.03215 1.20271 0.97545 0.92948 0.98797 1.21254 0.94090 0.98442 1.01931 1.21029 0.94386 0.97683 0.97554 1.19514 0.93956 0.93822 1.02068 1.20361 0.92586 1.01803 0.93843 0.86911 1.21756 1.02481 1.00040 0.94447 1.21115 0.80612 0.82154 0.86269 1.90627 1.56688 1.36822 1.59581 1.46771 1.14579 1.49655 1.21323 1.22054 0.93560 0.95355 0.94101 1.22555 0.98089 0.91201 0.90775 1.86875 1.35467 1.61368 1.45136 1.22695 0.90107 0.95138 0.89500 0.85690 1.21411 0.83828 0.95395 0.95393 1.44445 1.06526 1.29677 1.53891 1.19284 0.91544 1.06303 1.20160 0.91340 1.25551 0.98029 0.99513 1.01825 1.70160 1.14330 1.28095 1.46809 0.85137 0.77885 0.78552 0.78124 1.21060 1.21353 1.19972 1.21966 0.98211 0.89067 0.91421 1.21510 0.95402 0.97217 0.84051 0.89272 1.21267 0.94991 0.97597 0.99971 1.21240 0.94018 0.98453 1.01644 0.89725 0.91013 0.91169 0.84965 0.86650 0.89488 0.92694 0.89686 0.87789 0.87856 0.95389 0.83525 0.95504 0.96770 0.94172 0.92705 0.96386 0.85070 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 10.01 71.24 0.71 -1.15 16 2 C -0.10 -2.25 5.88 -19.87 -0.12 -2.37 16 3 C -0.14 -3.55 9.70 22.27 0.22 -3.34 16 4 C -0.09 -2.49 7.92 22.27 0.18 -2.32 16 5 C -0.09 -2.56 4.62 -19.86 -0.09 -2.65 16 6 C -0.06 -1.57 2.12 -12.29 -0.03 -1.60 16 7 H 0.11 2.38 5.91 -2.39 -0.01 2.37 16 8 C -0.13 -2.19 8.80 71.98 0.63 -1.56 16 9 C 0.51 16.68 6.06 87.65 0.53 17.21 16 10 O -0.56 -22.41 11.92 -3.04 -0.04 -22.45 16 11 N -0.59 -18.83 3.08 -805.47 -2.48 -21.32 16 12 C 0.07 1.64 5.37 86.33 0.46 2.11 16 13 C 0.05 1.37 6.72 71.64 0.48 1.85 16 14 O -0.37 -12.57 10.24 -146.18 -1.50 -14.07 16 15 C 0.09 3.28 3.82 30.85 0.12 3.40 16 16 H 0.13 4.39 8.14 -2.39 -0.02 4.37 16 17 C 0.17 8.38 5.02 86.63 0.43 8.81 16 18 N -0.62 -33.74 3.39 -695.60 -2.36 -36.10 16 19 C -0.24 -14.54 10.25 84.03 0.86 -13.68 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 21 C -0.06 -3.27 5.48 84.86 0.47 -2.80 16 22 N -0.95 -57.40 10.26 21.65 0.22 -57.18 16 23 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 27 C 0.12 5.60 6.29 86.83 0.55 6.15 16 28 C 0.12 4.62 3.38 45.83 0.15 4.78 16 29 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 30 C -0.12 -3.13 9.67 22.27 0.22 -2.91 16 31 C -0.14 -3.28 9.70 22.27 0.22 -3.06 16 32 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 34 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 35 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.12 3.33 7.02 -2.91 -0.02 3.31 16 37 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.05 1.04 7.56 -2.39 -0.02 1.02 16 39 H 0.08 1.08 6.54 -2.39 -0.02 1.07 16 40 H 0.10 1.98 5.71 -2.39 -0.01 1.97 16 41 H 0.10 1.68 7.24 -2.39 -0.02 1.66 16 42 H 0.03 0.95 6.81 -2.38 -0.02 0.94 16 43 H 0.15 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.03 1.50 5.74 -2.39 -0.01 1.49 16 45 H 0.01 0.81 7.48 -2.39 -0.02 0.79 16 46 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 47 H 0.06 2.81 5.12 -2.39 -0.01 2.80 16 48 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.13 2.96 7.95 -2.91 -0.02 2.94 16 50 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -76.62 380.95 2.81 -73.81 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.94 Total: 21.13 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.99 Total: 6.86 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -4.62 Total: -114.59 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.53 Total: -36.52 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -76.62 2.81 -73.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083251936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.185 kcal (2) G-P(sol) polarization free energy of solvation -76.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds