Wall clock time and date at job start Wed Apr 1 2020 04:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 120.00170 * 2 1 4 4 C 1.38213 * 119.99936 * 180.02562 * 3 2 1 5 5 C 1.38250 * 120.00178 * 359.95285 * 4 3 2 6 6 C 1.38221 * 120.00073 * 359.79539 * 5 4 3 7 7 C 1.38212 * 119.99946 * 179.97438 * 2 1 3 8 8 C 1.50709 * 119.99919 * 0.02562 * 7 2 1 9 9 H 1.09002 * 109.46880 * 6.00605 * 8 7 2 10 10 C 1.52997 * 109.46859 * 126.00751 * 8 7 2 11 11 C 1.50695 * 109.46657 * 246.01101 * 8 7 2 12 12 O 1.21279 * 120.00494 * 337.61560 * 11 8 7 13 13 N 1.34780 * 119.99854 * 157.62527 * 11 8 7 14 14 C 1.44397 * 116.90237 * 6.24529 * 13 11 8 15 15 C 1.51953 * 111.69828 * 203.99115 * 14 13 11 16 16 O 1.41330 * 111.60669 * 319.53809 * 15 14 13 17 17 C 1.40844 * 118.30040 * 56.88547 * 16 15 14 18 18 H 1.09001 * 108.89470 * 188.17321 * 17 16 15 19 19 C 1.53932 * 110.46866 * 68.14971 * 17 16 15 20 20 N 1.46770 * 107.61911 * 221.64725 * 19 17 16 21 21 C 1.36934 * 125.36714 * 178.66874 * 20 19 17 22 22 H 1.07991 * 120.00778 * 179.75431 * 21 20 19 23 23 C 1.38814 * 119.99309 * 359.75698 * 21 20 19 24 24 N 1.31624 * 119.99597 * 210.11434 * 23 21 20 25 25 Si 1.86802 * 120.00560 * 30.11699 * 23 21 20 26 26 H 1.48498 * 109.46655 * 275.56737 * 25 23 21 27 27 H 1.48505 * 109.46738 * 35.56227 * 25 23 21 28 28 H 1.48497 * 109.47304 * 155.56469 * 25 23 21 29 29 C 1.46872 * 109.27419 * 358.40282 * 20 19 17 30 30 C 1.44552 * 117.34045 * 185.93906 * 13 11 8 31 31 H 1.09002 * 109.64416 * 285.92079 * 30 13 11 32 32 H 1.09001 * 109.47146 * 263.75548 * 1 2 3 33 33 H 1.08997 * 109.46855 * 23.75311 * 1 2 3 34 34 H 1.08999 * 109.47161 * 143.75391 * 1 2 3 35 35 H 1.08003 * 119.99719 * 359.97438 * 3 2 1 36 36 H 1.07997 * 119.99749 * 179.97438 * 4 3 2 37 37 H 1.07998 * 120.00110 * 180.02562 * 5 4 3 38 38 H 1.07990 * 120.00205 * 180.25164 * 6 5 4 39 39 H 1.08994 * 109.47343 * 296.86302 * 10 8 7 40 40 H 1.09003 * 109.47244 * 56.86788 * 10 8 7 41 41 H 1.09004 * 109.46716 * 176.86217 * 10 8 7 42 42 H 1.09002 * 109.25796 * 83.32623 * 14 13 11 43 43 H 1.08999 * 108.96557 * 324.45664 * 14 13 11 44 44 H 1.09005 * 109.05214 * 198.99150 * 15 14 13 45 45 H 1.08995 * 109.05726 * 80.08700 * 15 14 13 46 46 H 1.09002 * 109.95287 * 102.05253 * 19 17 16 47 47 H 1.09005 * 109.69795 * 341.09830 * 19 17 16 48 48 H 0.96999 * 120.00337 * 354.94671 * 24 23 21 49 49 H 1.09000 * 110.07072 * 137.31118 * 29 20 19 50 50 H 1.09006 * 110.06866 * 258.78738 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5807 -1.1970 0.0052 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 1 0.3778 -2.3057 -0.1075 10 6 1.9244 -3.3680 -1.1660 11 6 1.6932 -3.2256 1.2989 12 8 2.6814 -2.9723 1.9547 13 7 0.8173 -4.1543 1.7312 14 6 -0.2602 -4.5033 0.8356 15 6 -1.4560 -5.0641 1.5869 16 8 -1.0559 -5.9295 2.6302 17 6 -0.1836 -5.4284 3.6159 18 1 0.1379 -6.2515 4.2542 19 6 -0.8945 -4.3669 4.4746 20 7 0.0535 -3.2691 4.6988 21 6 -0.2129 -2.1221 5.3976 22 1 0.5531 -1.3697 5.5130 23 6 -1.4679 -1.9264 5.9576 24 7 -1.9455 -0.7073 6.0925 25 14 -2.4789 -3.3931 6.5200 26 1 -3.2254 -3.9519 5.3643 27 1 -1.5759 -4.4329 7.0756 28 1 -3.4389 -2.9604 7.5670 29 6 1.3352 -3.5975 4.0610 30 6 1.0409 -4.7177 3.0435 31 1 1.8824 -5.4096 3.0068 32 1 -0.3633 -0.1118 1.0216 33 1 -0.3633 0.9406 -0.4139 34 1 -0.3633 -0.8288 -0.6076 35 1 1.6583 2.1326 -0.0004 36 1 4.1205 2.1326 -0.0010 37 1 5.3517 -0.0001 -0.0001 38 1 4.1206 -2.1323 0.0096 39 1 1.6941 -2.8694 -2.1074 40 1 3.0013 -3.5181 -1.0882 41 1 1.4197 -4.3336 -1.1333 42 1 0.0921 -5.2487 0.1226 43 1 -0.5702 -3.6120 0.2901 44 1 -2.0876 -5.6151 0.8900 45 1 -2.0297 -4.2392 2.0092 46 1 -1.1919 -4.7995 5.4299 47 1 -1.7726 -3.9950 3.9465 48 1 -1.3926 0.0577 5.8690 49 1 1.7332 -2.7217 3.5485 50 1 2.0463 -3.9481 4.8091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083282863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:08 Heat of formation + Delta-G solvation = 2.251538 kcal Electronic energy + Delta-G solvation = -32639.654852 eV Core-core repulsion = 28633.643096 eV Total energy + Delta-G solvation = -4006.011757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.22727 -39.69668 -38.30978 -36.29078 -35.05922 -34.22565 -32.64285 -32.39569 -30.44501 -29.58659 -28.13919 -27.96340 -26.80022 -25.04236 -24.09071 -23.55970 -22.17238 -21.30697 -20.48091 -19.88290 -18.72175 -17.61127 -17.17206 -17.12905 -16.58702 -15.96138 -15.54616 -15.23165 -15.15622 -14.83403 -14.66828 -14.26327 -14.16488 -13.65910 -13.54201 -13.51292 -13.08992 -12.99670 -12.98161 -12.89678 -12.44883 -12.19492 -12.07577 -12.05251 -11.86012 -11.71865 -11.62337 -11.38131 -11.13065 -10.95760 -10.85822 -10.66324 -10.59894 -10.30882 -9.82359 -9.60501 -9.26312 -9.05873 -8.67568 -8.50270 -8.35581 -8.32484 -7.04366 -6.35054 -3.11298 1.39668 1.52525 2.75410 2.99165 3.41070 3.49831 3.67067 3.80475 3.87441 4.44695 4.51470 4.59547 4.67209 4.74530 4.90812 4.91605 4.96829 5.01516 5.05991 5.10959 5.15922 5.20780 5.24698 5.32683 5.47388 5.47911 5.48474 5.51623 5.61683 5.65939 5.67760 5.72376 5.79144 5.80702 5.90050 5.94725 5.97016 6.14727 6.24505 6.29011 6.44835 6.56091 6.59820 6.61074 6.70267 6.72836 7.01559 7.09789 7.37997 7.50640 7.75171 8.32455 8.36812 9.07039 9.62775 10.27240 11.15734 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.004614 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.614254 B = 6067.146087 C = 7268.200894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C -0.125 4.125 4 C -0.116 4.116 5 C -0.132 4.132 6 C -0.077 4.077 7 C -0.072 4.072 8 C -0.078 4.078 9 H 0.105 0.895 10 C -0.139 4.139 11 C 0.518 3.482 12 O -0.517 6.517 13 N -0.587 5.587 14 C 0.076 3.924 15 C 0.053 3.947 16 O -0.368 6.368 17 C 0.088 3.912 18 H 0.118 0.882 19 C 0.081 3.919 20 N -0.604 5.604 21 C -0.329 4.329 22 H 0.078 0.922 23 C -0.020 4.020 24 N -0.915 5.915 25 Si 1.064 2.936 26 H -0.294 1.294 27 H -0.293 1.293 28 H -0.299 1.299 29 C 0.120 3.880 30 C 0.114 3.886 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.041 0.959 47 H 0.047 0.953 48 H 0.263 0.737 49 H 0.080 0.920 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -5.330 -18.422 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.072 4.072 3 C -0.143 4.143 4 C -0.134 4.134 5 C -0.151 4.151 6 C -0.095 4.095 7 C -0.072 4.072 8 C -0.099 4.099 9 H 0.123 0.877 10 C -0.196 4.196 11 C 0.306 3.694 12 O -0.392 6.392 13 N -0.321 5.321 14 C -0.048 4.048 15 C -0.024 4.024 16 O -0.285 6.285 17 C 0.029 3.971 18 H 0.136 0.864 19 C -0.045 4.045 20 N -0.332 5.332 21 C -0.456 4.456 22 H 0.096 0.904 23 C -0.220 4.220 24 N -0.556 5.556 25 Si 0.898 3.102 26 H -0.221 1.221 27 H -0.222 1.222 28 H -0.227 1.227 29 C -0.006 4.006 30 C 0.010 3.990 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.125 0.875 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.098 0.902 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.835 -5.767 -17.351 18.912 hybrid contribution 1.550 0.700 -0.378 1.742 sum 6.385 -5.067 -17.729 19.513 Atomic orbital electron populations 1.20903 0.91329 1.02393 1.03175 1.19753 0.95967 0.92607 0.98917 1.20950 0.94270 0.97231 1.01842 1.21089 0.94290 0.97917 1.00094 1.21061 0.99647 0.92526 1.01817 1.20897 0.93374 0.98031 0.97247 1.19125 0.93618 0.92505 1.01948 1.20419 1.01912 0.93560 0.94051 0.87682 1.21787 1.02263 0.99049 0.96535 1.20421 0.82944 0.79119 0.86949 1.90656 1.27836 1.64091 1.56660 1.46482 1.27610 1.41594 1.16417 1.21647 0.89143 1.01090 0.92943 1.22320 0.94973 0.95468 0.89641 1.86914 1.65196 1.39903 1.36503 1.22557 0.88326 0.97391 0.88782 0.86418 1.22259 0.94894 0.89516 0.97792 1.44579 1.07610 1.18461 1.62588 1.19966 1.00177 0.93328 1.32124 0.90386 1.25637 0.94809 1.02203 0.99401 1.70911 1.34449 0.98144 1.52057 0.83858 0.75158 0.74635 0.76522 1.22150 1.22151 1.22684 1.21897 0.89255 0.97095 0.92349 1.21636 0.97895 0.96780 0.82708 0.90403 0.90339 0.91453 0.91546 0.86190 0.86378 0.86374 0.86131 0.91205 0.91681 0.91732 0.91434 0.89685 0.87488 0.92202 0.94158 0.93518 0.92703 0.90204 0.95336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.27 36.01 0.33 -1.18 16 2 C -0.07 -1.01 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.64 9.68 -39.58 -0.38 -2.03 16 4 C -0.12 -1.45 10.05 -39.59 -0.40 -1.84 16 5 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 6 C -0.08 -1.08 7.93 -39.58 -0.31 -1.40 16 7 C -0.07 -1.02 4.56 -104.62 -0.48 -1.49 16 8 C -0.08 -1.00 1.92 -92.92 -0.18 -1.18 16 9 H 0.11 1.23 3.56 -51.93 -0.18 1.04 16 10 C -0.14 -1.32 8.88 37.16 0.33 -0.99 16 11 C 0.52 8.49 6.06 -10.99 -0.07 8.42 16 12 O -0.52 -10.17 12.38 5.56 0.07 -10.10 16 13 N -0.59 -9.30 3.07 -169.26 -0.52 -9.82 16 14 C 0.08 0.91 5.35 -5.70 -0.03 0.88 16 15 C 0.05 0.70 6.72 36.63 0.25 0.95 16 16 O -0.37 -5.86 10.25 -34.44 -0.35 -6.21 16 17 C 0.09 1.56 3.81 -26.39 -0.10 1.46 16 18 H 0.12 1.85 8.14 -51.93 -0.42 1.42 16 19 C 0.08 1.81 4.49 -3.41 -0.02 1.80 16 20 N -0.60 -15.35 3.36 -171.43 -0.58 -15.93 16 21 C -0.33 -9.71 10.41 -15.06 -0.16 -9.86 16 22 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 23 C -0.02 -0.59 5.44 -17.43 -0.09 -0.69 16 24 N -0.91 -28.88 13.70 55.49 0.76 -28.12 16 25 Si 1.06 27.23 24.61 -169.99 -4.18 23.05 16 26 H -0.29 -7.09 6.42 56.52 0.36 -6.72 16 27 H -0.29 -7.17 6.45 56.52 0.36 -6.81 16 28 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 29 C 0.12 2.67 6.30 -3.23 -0.02 2.65 16 30 C 0.11 2.04 3.36 -68.51 -0.23 1.81 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 34 H 0.07 0.69 6.35 -51.93 -0.33 0.36 16 35 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.12 1.63 6.99 -52.49 -0.37 1.26 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.65 6.97 -51.93 -0.36 0.29 16 41 H 0.06 0.53 6.44 -51.93 -0.33 0.20 16 42 H 0.07 0.65 7.17 -51.93 -0.37 0.28 16 43 H 0.09 0.88 5.64 -51.93 -0.29 0.59 16 44 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.91 6.83 -51.93 -0.35 0.56 16 46 H 0.04 0.95 4.20 -51.93 -0.22 0.73 16 47 H 0.05 1.11 5.36 -51.93 -0.28 0.84 16 48 H 0.26 8.26 8.73 -40.82 -0.36 7.90 16 49 H 0.08 1.96 5.10 -51.93 -0.26 1.70 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -35.22 369.97 -9.03 -44.25 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.23 Total: 3.74 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.57 Total: -6.43 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.33 Total: -53.87 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.28 Total: -16.31 kcal Atomic # 14 Polarization: 27.23 SS G_CDS: -4.18 Total: 23.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.22 -9.03 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083282863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.504 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds