Wall clock time and date at job start Wed Apr 1 2020 04:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 120.00170 * 2 1 4 4 C 1.38213 * 119.99936 * 180.02562 * 3 2 1 5 5 C 1.38250 * 120.00178 * 359.95285 * 4 3 2 6 6 C 1.38221 * 120.00073 * 359.79539 * 5 4 3 7 7 C 1.38212 * 119.99946 * 179.97438 * 2 1 3 8 8 C 1.50709 * 119.99919 * 0.02562 * 7 2 1 9 9 H 1.09002 * 109.46880 * 6.00605 * 8 7 2 10 10 C 1.52997 * 109.46859 * 126.00751 * 8 7 2 11 11 C 1.50695 * 109.46657 * 246.01101 * 8 7 2 12 12 O 1.21279 * 120.00494 * 337.61560 * 11 8 7 13 13 N 1.34780 * 119.99854 * 157.62527 * 11 8 7 14 14 C 1.44397 * 116.90237 * 6.24529 * 13 11 8 15 15 C 1.51953 * 111.69828 * 203.99115 * 14 13 11 16 16 O 1.41330 * 111.60669 * 319.53809 * 15 14 13 17 17 C 1.40844 * 118.30040 * 56.88547 * 16 15 14 18 18 H 1.09001 * 108.89470 * 188.17321 * 17 16 15 19 19 C 1.53932 * 110.46866 * 68.14971 * 17 16 15 20 20 N 1.46770 * 107.61911 * 221.64725 * 19 17 16 21 21 C 1.36934 * 125.36714 * 178.66874 * 20 19 17 22 22 H 1.07991 * 120.00778 * 179.75431 * 21 20 19 23 23 C 1.38814 * 119.99309 * 359.75698 * 21 20 19 24 24 N 1.31624 * 119.99597 * 210.11434 * 23 21 20 25 25 Si 1.86802 * 120.00560 * 30.11699 * 23 21 20 26 26 H 1.48498 * 109.46655 * 275.56737 * 25 23 21 27 27 H 1.48505 * 109.46738 * 35.56227 * 25 23 21 28 28 H 1.48497 * 109.47304 * 155.56469 * 25 23 21 29 29 C 1.46872 * 109.27419 * 358.40282 * 20 19 17 30 30 C 1.44552 * 117.34045 * 185.93906 * 13 11 8 31 31 H 1.09002 * 109.64416 * 285.92079 * 30 13 11 32 32 H 1.09001 * 109.47146 * 263.75548 * 1 2 3 33 33 H 1.08997 * 109.46855 * 23.75311 * 1 2 3 34 34 H 1.08999 * 109.47161 * 143.75391 * 1 2 3 35 35 H 1.08003 * 119.99719 * 359.97438 * 3 2 1 36 36 H 1.07997 * 119.99749 * 179.97438 * 4 3 2 37 37 H 1.07998 * 120.00110 * 180.02562 * 5 4 3 38 38 H 1.07990 * 120.00205 * 180.25164 * 6 5 4 39 39 H 1.08994 * 109.47343 * 296.86302 * 10 8 7 40 40 H 1.09003 * 109.47244 * 56.86788 * 10 8 7 41 41 H 1.09004 * 109.46716 * 176.86217 * 10 8 7 42 42 H 1.09002 * 109.25796 * 83.32623 * 14 13 11 43 43 H 1.08999 * 108.96557 * 324.45664 * 14 13 11 44 44 H 1.09005 * 109.05214 * 198.99150 * 15 14 13 45 45 H 1.08995 * 109.05726 * 80.08700 * 15 14 13 46 46 H 1.09002 * 109.95287 * 102.05253 * 19 17 16 47 47 H 1.09005 * 109.69795 * 341.09830 * 19 17 16 48 48 H 0.96999 * 120.00337 * 354.94671 * 24 23 21 49 49 H 1.09000 * 110.07072 * 137.31118 * 29 20 19 50 50 H 1.09006 * 110.06866 * 258.78738 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5807 -1.1970 0.0052 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 1 0.3778 -2.3057 -0.1075 10 6 1.9244 -3.3680 -1.1660 11 6 1.6932 -3.2256 1.2989 12 8 2.6814 -2.9723 1.9547 13 7 0.8173 -4.1543 1.7312 14 6 -0.2602 -4.5033 0.8356 15 6 -1.4560 -5.0641 1.5869 16 8 -1.0559 -5.9295 2.6302 17 6 -0.1836 -5.4284 3.6159 18 1 0.1379 -6.2515 4.2542 19 6 -0.8945 -4.3669 4.4746 20 7 0.0535 -3.2691 4.6988 21 6 -0.2129 -2.1221 5.3976 22 1 0.5531 -1.3697 5.5130 23 6 -1.4679 -1.9264 5.9576 24 7 -1.9455 -0.7073 6.0925 25 14 -2.4789 -3.3931 6.5200 26 1 -3.2254 -3.9519 5.3643 27 1 -1.5759 -4.4329 7.0756 28 1 -3.4389 -2.9604 7.5670 29 6 1.3352 -3.5975 4.0610 30 6 1.0409 -4.7177 3.0435 31 1 1.8824 -5.4096 3.0068 32 1 -0.3633 -0.1118 1.0216 33 1 -0.3633 0.9406 -0.4139 34 1 -0.3633 -0.8288 -0.6076 35 1 1.6583 2.1326 -0.0004 36 1 4.1205 2.1326 -0.0010 37 1 5.3517 -0.0001 -0.0001 38 1 4.1206 -2.1323 0.0096 39 1 1.6941 -2.8694 -2.1074 40 1 3.0013 -3.5181 -1.0882 41 1 1.4197 -4.3336 -1.1333 42 1 0.0921 -5.2487 0.1226 43 1 -0.5702 -3.6120 0.2901 44 1 -2.0876 -5.6151 0.8900 45 1 -2.0297 -4.2392 2.0092 46 1 -1.1919 -4.7995 5.4299 47 1 -1.7726 -3.9950 3.9465 48 1 -1.3926 0.0577 5.8690 49 1 1.7332 -2.7217 3.5485 50 1 2.0463 -3.9481 4.8091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083282863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:06 Heat of formation + Delta-G solvation = -21.738440 kcal Electronic energy + Delta-G solvation = -32640.695136 eV Core-core repulsion = 28633.643096 eV Total energy + Delta-G solvation = -4007.052040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.48878 -40.83720 -39.52436 -37.92035 -36.30829 -35.38744 -34.44174 -33.57774 -32.08135 -30.58868 -29.73230 -29.37160 -27.79381 -26.42550 -25.49895 -24.90803 -23.38719 -22.61567 -22.05925 -21.14547 -20.04470 -19.47395 -18.60266 -18.40360 -17.76465 -17.30892 -16.75030 -16.52529 -16.38614 -16.05464 -15.89481 -15.75226 -15.53456 -15.23885 -14.82001 -14.76506 -14.57323 -14.37499 -14.16703 -14.00567 -13.73041 -13.47375 -13.27769 -13.24452 -13.05861 -13.03081 -12.82813 -12.69684 -12.60629 -12.54262 -12.17739 -11.87818 -11.82632 -11.71581 -11.58524 -11.38219 -10.97573 -10.58112 -10.41400 -9.72361 -9.62508 -9.49406 -9.19307 -8.76274 -5.44538 0.36468 0.48353 1.33933 1.45746 1.52587 1.64710 1.81348 2.44899 2.61876 2.81927 2.94156 3.23500 3.38338 3.46326 3.51828 3.61237 3.77827 3.90597 3.93830 3.99846 4.03181 4.12943 4.14657 4.18358 4.23844 4.35667 4.38994 4.41548 4.58408 4.61762 4.63150 4.67883 4.73131 4.79271 4.82413 4.86737 4.88586 4.91095 4.94134 4.99360 5.13793 5.21064 5.24356 5.47760 5.54892 5.58024 5.59750 5.69411 6.01234 6.08655 6.17265 6.30067 6.77027 7.10123 7.41319 8.04514 8.75256 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.004614 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.614254 B = 6067.146087 C = 7268.200894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.138 4.138 4 C -0.122 4.122 5 C -0.141 4.141 6 C -0.093 4.093 7 C -0.088 4.088 8 C -0.071 4.071 9 H 0.116 0.884 10 C -0.132 4.132 11 C 0.510 3.490 12 O -0.560 6.560 13 N -0.592 5.592 14 C 0.067 3.933 15 C 0.045 3.955 16 O -0.364 6.364 17 C 0.103 3.897 18 H 0.145 0.855 19 C 0.075 3.925 20 N -0.619 5.619 21 C -0.327 4.327 22 H 0.035 0.965 23 C -0.070 4.070 24 N -0.943 5.943 25 Si 1.109 2.891 26 H -0.268 1.268 27 H -0.274 1.274 28 H -0.302 1.302 29 C 0.118 3.882 30 C 0.125 3.875 31 H 0.099 0.901 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.154 0.846 45 H 0.032 0.968 46 H 0.039 0.961 47 H 0.033 0.967 48 H 0.247 0.753 49 H 0.051 0.949 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.114 -8.149 -20.957 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 C -0.156 4.156 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.111 4.111 7 C -0.088 4.088 8 C -0.092 4.092 9 H 0.134 0.866 10 C -0.189 4.189 11 C 0.299 3.701 12 O -0.438 6.438 13 N -0.326 5.326 14 C -0.055 4.055 15 C -0.032 4.032 16 O -0.280 6.280 17 C 0.044 3.956 18 H 0.163 0.837 19 C -0.050 4.050 20 N -0.348 5.348 21 C -0.455 4.455 22 H 0.053 0.947 23 C -0.265 4.265 24 N -0.586 5.586 25 Si 0.936 3.064 26 H -0.194 1.194 27 H -0.201 1.201 28 H -0.230 1.230 29 C -0.008 4.008 30 C 0.020 3.980 31 H 0.117 0.883 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.171 0.829 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.071 -8.616 -19.940 22.100 hybrid contribution 1.883 1.717 0.386 2.577 sum 5.953 -6.900 -19.554 21.574 Atomic orbital electron populations 1.20876 0.90583 1.04360 1.01511 1.20053 0.96811 0.93054 0.99554 1.21286 0.94951 0.97759 1.01626 1.21427 0.94306 0.98902 0.99338 1.21390 1.00853 0.92417 1.01263 1.21049 0.93677 0.98491 0.97859 1.19390 0.93986 0.93324 1.02098 1.20463 1.02409 0.93063 0.93254 0.86608 1.21797 1.01945 0.99495 0.95689 1.21124 0.82357 0.78854 0.87773 1.90633 1.29781 1.65249 1.58153 1.46643 1.28476 1.41452 1.15984 1.22016 0.87760 1.02992 0.92702 1.22663 0.95645 0.95215 0.89634 1.86946 1.64602 1.39957 1.36533 1.22448 0.87648 0.96540 0.88982 0.83716 1.22421 0.94382 0.89683 0.98511 1.44548 1.09667 1.18415 1.62146 1.19757 0.99272 0.94214 1.32232 0.94717 1.26980 0.96445 1.03826 0.99210 1.71034 1.34764 0.98567 1.54216 0.83294 0.74329 0.72002 0.76800 1.19414 1.20077 1.23019 1.21916 0.87855 0.97857 0.93131 1.21424 0.98908 0.95038 0.82653 0.88342 0.93744 0.89748 0.89350 0.84711 0.83946 0.84422 0.86264 0.89244 0.92416 0.89692 0.87530 0.88033 0.82870 0.94949 0.94327 0.94898 0.94403 0.93125 0.95862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 9.27 71.24 0.66 -2.23 16 2 C -0.09 -2.66 5.88 -19.86 -0.12 -2.78 16 3 C -0.14 -3.63 9.68 22.27 0.22 -3.42 16 4 C -0.12 -2.99 10.05 22.27 0.22 -2.76 16 5 C -0.14 -3.61 10.05 22.27 0.22 -3.39 16 6 C -0.09 -2.61 7.93 22.27 0.18 -2.44 16 7 C -0.09 -2.48 4.56 -19.86 -0.09 -2.57 16 8 C -0.07 -1.72 1.92 -12.29 -0.02 -1.74 16 9 H 0.12 2.47 3.56 -2.39 -0.01 2.46 16 10 C -0.13 -2.13 8.88 71.98 0.64 -1.49 16 11 C 0.51 16.39 6.06 87.65 0.53 16.92 16 12 O -0.56 -22.57 12.38 -3.02 -0.04 -22.61 16 13 N -0.59 -17.61 3.07 -807.82 -2.48 -20.09 16 14 C 0.07 1.36 5.35 86.43 0.46 1.82 16 15 C 0.04 1.00 6.72 71.64 0.48 1.49 16 16 O -0.36 -10.09 10.25 -146.16 -1.50 -11.59 16 17 C 0.10 3.36 3.81 30.81 0.12 3.47 16 18 H 0.15 3.96 8.14 -2.39 -0.02 3.94 16 19 C 0.07 3.26 4.49 86.64 0.39 3.64 16 20 N -0.62 -32.09 3.36 -696.27 -2.34 -34.43 16 21 C -0.33 -20.17 10.41 84.03 0.87 -19.29 16 22 H 0.03 2.38 8.06 -2.92 -0.02 2.36 16 23 C -0.07 -4.30 5.44 84.86 0.46 -3.84 16 24 N -0.94 -61.87 13.70 21.65 0.30 -61.58 16 25 Si 1.11 55.05 24.61 68.60 1.69 56.74 16 26 H -0.27 -12.15 6.42 99.48 0.64 -11.51 16 27 H -0.27 -12.64 6.45 99.48 0.64 -12.00 16 28 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 29 C 0.12 5.37 6.30 86.70 0.55 5.92 16 30 C 0.12 4.25 3.36 45.65 0.15 4.41 16 31 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.73 8.04 -2.39 -0.02 1.71 16 34 H 0.09 1.71 6.35 -2.39 -0.02 1.69 16 35 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 38 H 0.12 3.28 6.99 -2.92 -0.02 3.26 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.04 6.97 -2.39 -0.02 1.02 16 41 H 0.08 1.02 6.44 -2.38 -0.02 1.00 16 42 H 0.11 1.42 7.17 -2.39 -0.02 1.41 16 43 H 0.10 1.73 5.64 -2.39 -0.01 1.72 16 44 H 0.15 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.03 0.91 6.83 -2.39 -0.02 0.90 16 46 H 0.04 1.73 4.20 -2.39 -0.01 1.72 16 47 H 0.03 1.53 5.36 -2.38 -0.01 1.52 16 48 H 0.25 16.45 8.73 -92.71 -0.81 15.64 16 49 H 0.05 2.62 5.10 -2.39 -0.01 2.61 16 50 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -82.13 369.97 2.35 -79.78 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.79 Total: 22.03 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 5.93 Total: -8.27 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -4.52 Total: -116.09 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.53 Total: -34.19 kcal Atomic # 14 Polarization: 55.05 SS G_CDS: 1.69 Total: 56.74 kcal Total: -82.13 2.35 -79.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083282863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.046 kcal (2) G-P(sol) polarization free energy of solvation -82.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds