Wall clock time and date at job start Wed Apr 1 2020 02:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35904 * 116.99489 * 2 1 4 4 C 1.38754 * 120.05851 * 359.96953 * 3 2 1 5 5 C 1.38112 * 119.94398 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05719 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94643 * 179.97438 * 6 5 4 8 8 C 1.38241 * 120.11091 * 359.70334 * 6 5 4 9 9 C 1.38169 * 120.05366 * 0.55185 * 8 6 5 10 10 C 1.50706 * 120.02544 * 179.74596 * 9 8 6 11 11 C 1.50692 * 109.47099 * 264.72447 * 10 9 8 12 12 O 1.21274 * 120.00244 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99841 * 180.02562 * 11 10 9 14 14 C 1.47797 * 135.01211 * 0.02562 * 13 11 10 15 15 C 1.54653 * 85.79372 * 153.79472 * 14 13 11 16 16 H 1.09001 * 115.01715 * 139.91503 * 15 14 13 17 17 C 1.53007 * 110.84104 * 270.23550 * 15 14 13 18 18 C 1.53096 * 109.45011 * 143.88947 * 17 15 14 19 19 N 1.47242 * 107.31813 * 300.04525 * 18 17 15 20 20 C 1.36939 * 120.44199 * 237.68797 * 19 18 17 21 21 H 1.07993 * 120.00162 * 27.75806 * 20 19 18 22 22 C 1.38811 * 119.99831 * 207.75901 * 20 19 18 23 23 N 1.31618 * 120.00382 * 12.35391 * 22 20 19 24 24 Si 1.86806 * 120.00025 * 192.35013 * 22 20 19 25 25 H 1.48500 * 109.47214 * 89.99760 * 24 22 20 26 26 H 1.48499 * 109.47339 * 210.00145 * 24 22 20 27 27 H 1.48506 * 109.46795 * 329.99960 * 24 22 20 28 28 C 1.45686 * 119.66008 * 58.89910 * 19 18 17 29 29 C 1.46822 * 135.01068 * 180.02562 * 13 11 10 30 30 H 1.08993 * 111.55968 * 94.49480 * 29 13 11 31 31 H 1.09006 * 109.46492 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47386 * 300.00313 * 1 2 3 33 33 H 1.08998 * 109.46924 * 60.01101 * 1 2 3 34 34 H 1.07998 * 120.02357 * 0.02562 * 4 3 2 35 35 H 1.08003 * 119.97326 * 180.02562 * 5 4 3 36 36 H 1.08993 * 109.47755 * 89.99464 * 7 6 5 37 37 H 1.09002 * 109.47364 * 210.00519 * 7 6 5 38 38 H 1.09008 * 109.46639 * 329.99707 * 7 6 5 39 39 H 1.08006 * 119.97529 * 180.27550 * 8 6 5 40 40 H 1.09003 * 109.46436 * 144.72512 * 10 9 8 41 41 H 1.08997 * 109.47302 * 24.72696 * 10 9 8 42 42 H 1.09005 * 113.82150 * 39.57997 * 14 13 11 43 43 H 1.09001 * 113.82862 * 268.01850 * 14 13 11 44 44 H 1.09002 * 109.47366 * 263.88619 * 17 15 14 45 45 H 1.09008 * 109.47567 * 23.89691 * 17 15 14 46 46 H 1.09004 * 109.75537 * 60.64384 * 18 17 15 47 47 H 1.08994 * 109.75841 * 181.39306 * 18 17 15 48 48 H 0.97005 * 120.00386 * 180.02562 * 23 22 20 49 49 H 1.08993 * 108.71694 * 198.59112 * 28 19 18 50 50 H 1.08995 * 108.71240 * 80.56513 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 -0.0006 5 6 1.9207 3.6048 -0.0012 6 6 3.3017 3.6759 -0.0016 7 6 3.9859 5.0187 -0.0028 8 6 4.0558 2.5173 0.0047 9 6 3.4310 1.2849 -0.0001 10 6 4.2538 0.0223 0.0010 11 6 4.4243 -0.4673 -1.4139 12 8 3.9265 0.1481 -2.3327 13 7 5.1294 -1.5898 -1.6583 14 6 5.8547 -2.5709 -0.8242 15 6 5.5748 -3.5768 -1.9651 16 1 6.3997 -4.2500 -2.1987 17 6 4.2451 -4.2993 -1.7397 18 6 3.5577 -4.5342 -3.0873 19 7 3.3324 -3.2145 -3.7003 20 6 2.0682 -2.8159 -4.0440 21 1 1.2151 -3.2026 -3.5064 22 6 1.8832 -1.9146 -5.0834 23 7 2.8812 -1.6294 -5.8927 24 14 0.2177 -1.1064 -5.3336 25 1 0.1594 0.1581 -4.5572 26 1 0.0223 -0.8113 -6.7758 27 1 -0.8527 -2.0238 -4.8666 28 6 4.4668 -2.3398 -3.9659 29 6 5.4951 -2.3446 -2.8633 30 1 6.4776 -2.0541 -3.2350 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 0.2127 2.3203 -0.0007 35 1 1.3338 4.5114 -0.0013 36 1 4.1511 5.3433 1.0245 37 1 4.9436 4.9381 -0.5169 38 1 3.3576 5.7460 -0.5171 39 1 5.1343 2.5754 0.0088 40 1 3.7467 -0.7412 0.5911 41 1 5.2324 0.2267 0.4352 42 1 5.3490 -2.8134 0.1105 43 1 6.9115 -2.3394 -0.6907 44 1 4.4299 -5.2575 -1.2541 45 1 3.6025 -3.6885 -1.1055 46 1 4.1917 -5.1542 -3.7212 47 1 2.5981 -5.0267 -2.9306 48 1 2.7520 -0.9993 -6.6188 49 1 4.1002 -1.3219 -4.0978 50 1 4.9453 -2.6592 -4.8917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084495366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:37 Heat of formation + Delta-G solvation = 17.805251 kcal Electronic energy + Delta-G solvation = -32116.849086 eV Core-core repulsion = 28111.511789 eV Total energy + Delta-G solvation = -4005.337297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.43153 -39.93680 -37.65386 -37.22353 -35.03327 -33.02149 -32.04280 -31.47954 -30.05633 -29.33247 -27.71363 -27.24019 -26.64011 -25.67899 -23.78067 -22.89631 -21.88702 -21.04939 -20.72010 -19.39538 -17.82728 -17.61490 -16.79938 -16.35003 -15.80600 -15.58598 -15.42008 -15.29905 -14.66429 -14.31634 -14.17647 -13.87292 -13.64869 -13.60392 -13.44648 -13.18199 -12.98167 -12.94243 -12.65495 -12.23384 -12.15746 -11.94830 -11.80063 -11.77070 -11.63479 -11.37060 -11.12585 -11.00466 -10.68894 -10.64812 -10.63706 -10.54672 -10.38328 -10.12176 -9.79109 -9.74851 -9.54138 -8.87434 -8.59040 -8.21036 -7.92826 -7.77870 -6.49537 -5.58149 -3.02353 1.46510 1.60369 3.42229 3.44020 3.49178 3.51873 3.54432 3.57469 3.92901 4.64806 4.80116 4.82368 4.89634 4.98200 5.04525 5.16601 5.28424 5.32715 5.37232 5.40356 5.46172 5.51351 5.57320 5.60851 5.64110 5.66948 5.70052 5.72035 5.75032 5.81494 5.83095 5.96203 5.98833 6.18109 6.22994 6.32165 6.44006 6.46360 6.48272 6.55785 6.64737 6.68668 6.72344 6.85899 6.96062 7.08237 7.60213 7.62316 7.86834 8.03359 8.49144 8.65651 9.00438 9.42706 10.06004 10.56966 11.49377 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.004945 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.108788 B = 5661.043979 C = 7004.485042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.305 6.305 3 C 0.146 3.854 4 C -0.206 4.206 5 C -0.083 4.083 6 C -0.130 4.130 7 C -0.105 4.105 8 C -0.071 4.071 9 C -0.089 4.089 10 C -0.086 4.086 11 C 0.538 3.462 12 O -0.509 6.509 13 N -0.634 5.634 14 C 0.095 3.905 15 C -0.110 4.110 16 H 0.084 0.916 17 C -0.115 4.115 18 C 0.145 3.855 19 N -0.583 5.583 20 C -0.246 4.246 21 H 0.060 0.940 22 C 0.012 3.988 23 N -0.904 5.904 24 Si 0.898 3.102 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.166 3.834 29 C 0.124 3.876 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.021 0.979 47 H 0.054 0.946 48 H 0.251 0.749 49 H 0.105 0.895 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 4.505 16.639 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C 0.100 3.900 4 C -0.225 4.225 5 C -0.101 4.101 6 C -0.130 4.130 7 C -0.162 4.162 8 C -0.089 4.089 9 C -0.090 4.090 10 C -0.126 4.126 11 C 0.327 3.673 12 O -0.383 6.383 13 N -0.371 5.371 14 C -0.028 4.028 15 C -0.129 4.129 16 H 0.102 0.898 17 C -0.155 4.155 18 C 0.018 3.982 19 N -0.306 5.306 20 C -0.376 4.376 21 H 0.078 0.922 22 C -0.186 4.186 23 N -0.549 5.549 24 Si 0.729 3.271 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.207 1.207 28 C 0.040 3.960 29 C 0.020 3.980 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.123 0.877 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.923 4.971 16.015 17.221 hybrid contribution -1.015 0.634 -0.173 1.209 sum 2.908 5.605 15.842 17.054 Atomic orbital electron populations 1.23025 0.78595 1.04041 1.00798 1.86120 1.21167 1.26474 1.88044 1.18782 0.91716 0.84421 0.95110 1.21146 0.99846 0.92347 1.09164 1.20716 0.93894 0.96762 0.98737 1.19679 0.93602 0.95243 1.04489 1.20669 1.00290 0.93562 1.01639 1.20644 0.99311 0.90577 0.98338 1.18624 0.90330 0.94564 1.05456 1.20399 1.00175 0.95897 0.96108 1.19836 0.78348 0.78727 0.90435 1.90778 1.46621 1.54941 1.45969 1.49840 1.52059 1.24483 1.10766 1.23503 0.96097 0.87232 0.95992 1.22852 0.98845 0.95620 0.95587 0.89826 1.21845 0.94988 0.98225 1.00394 1.20869 0.97422 0.88573 0.91287 1.43617 1.03824 1.11381 1.71752 1.19020 0.83877 1.24118 1.10554 0.92187 1.24960 0.96963 1.01094 0.95607 1.69986 1.30668 1.36704 1.17501 0.86348 0.84052 0.79917 0.76787 1.21453 1.21877 1.20704 1.20105 0.86605 0.99013 0.90319 1.22690 0.98906 0.86801 0.89607 0.91292 0.88206 0.93164 0.92618 0.85656 0.86199 0.91785 0.91793 0.91921 0.85819 0.88436 0.89148 0.90832 0.90738 0.92974 0.91977 0.96159 0.92754 0.93881 0.87663 0.95529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.31 -5.51 9.63 -19.44 -0.19 -5.69 16 3 C 0.15 2.55 6.66 -39.22 -0.26 2.29 16 4 C -0.21 -3.16 9.04 -39.44 -0.36 -3.52 16 5 C -0.08 -1.15 9.69 -39.61 -0.38 -1.53 16 6 C -0.13 -1.79 5.88 -104.60 -0.62 -2.40 16 7 C -0.10 -1.08 10.01 36.01 0.36 -0.72 16 8 C -0.07 -1.05 9.33 -39.61 -0.37 -1.42 16 9 C -0.09 -1.50 4.39 -104.47 -0.46 -1.96 16 10 C -0.09 -1.38 5.33 -29.04 -0.15 -1.53 16 11 C 0.54 11.17 7.98 -10.99 -0.09 11.08 16 12 O -0.51 -13.35 15.09 5.56 0.08 -13.27 16 13 N -0.63 -11.91 3.33 -174.01 -0.58 -12.49 16 14 C 0.10 1.30 7.97 -3.01 -0.02 1.27 16 15 C -0.11 -1.73 4.39 -89.97 -0.40 -2.12 16 16 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 17 C -0.12 -1.97 5.63 -26.68 -0.15 -2.12 16 18 C 0.14 3.07 6.54 -3.59 -0.02 3.05 16 19 N -0.58 -15.30 3.01 -174.57 -0.52 -15.82 16 20 C -0.25 -7.20 9.57 -15.06 -0.14 -7.34 16 21 H 0.06 1.74 7.86 -52.49 -0.41 1.32 16 22 C 0.01 0.37 4.99 -17.43 -0.09 0.28 16 23 N -0.90 -28.18 10.91 55.49 0.61 -27.57 16 24 Si 0.90 23.80 29.57 -169.99 -5.03 18.77 16 25 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 26 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.17 4.27 4.54 -5.59 -0.03 4.24 16 29 C 0.12 2.46 4.27 -69.58 -0.30 2.17 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 33 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 34 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 35 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.06 0.59 8.09 -51.92 -0.42 0.17 16 39 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.10 1.50 7.69 -51.93 -0.40 1.10 16 41 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 42 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.18 7.70 -51.92 -0.40 0.78 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.05 1.14 7.91 -51.93 -0.41 0.73 16 48 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 49 H 0.11 3.20 4.84 -51.93 -0.25 2.95 16 50 H 0.03 0.74 7.95 -51.93 -0.41 0.33 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -37.02 398.07 -10.14 -47.16 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.02 Total: 1.79 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.48 Total: 1.13 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.50 Total: -55.89 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.10 Total: -18.96 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.03 Total: 18.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.02 -10.14 -47.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084495366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.967 kcal (2) G-P(sol) polarization free energy of solvation -37.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds