Wall clock time and date at job start Wed Apr 1 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35904 * 116.99489 * 2 1 4 4 C 1.38754 * 120.05851 * 359.96953 * 3 2 1 5 5 C 1.38112 * 119.94398 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05719 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94643 * 179.97438 * 6 5 4 8 8 C 1.38241 * 120.11091 * 359.70334 * 6 5 4 9 9 C 1.38169 * 120.05366 * 0.55185 * 8 6 5 10 10 C 1.50706 * 120.02544 * 179.74596 * 9 8 6 11 11 C 1.50692 * 109.47099 * 264.72447 * 10 9 8 12 12 O 1.21274 * 120.00244 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99841 * 180.02562 * 11 10 9 14 14 C 1.47797 * 135.01211 * 0.02562 * 13 11 10 15 15 C 1.54653 * 85.79372 * 153.79472 * 14 13 11 16 16 H 1.09001 * 115.01715 * 139.91503 * 15 14 13 17 17 C 1.53007 * 110.84104 * 270.23550 * 15 14 13 18 18 C 1.53096 * 109.45011 * 143.88947 * 17 15 14 19 19 N 1.47242 * 107.31813 * 300.04525 * 18 17 15 20 20 C 1.36939 * 120.44199 * 237.68797 * 19 18 17 21 21 H 1.07993 * 120.00162 * 27.75806 * 20 19 18 22 22 C 1.38811 * 119.99831 * 207.75901 * 20 19 18 23 23 N 1.31618 * 120.00382 * 12.35391 * 22 20 19 24 24 Si 1.86806 * 120.00025 * 192.35013 * 22 20 19 25 25 H 1.48500 * 109.47214 * 89.99760 * 24 22 20 26 26 H 1.48499 * 109.47339 * 210.00145 * 24 22 20 27 27 H 1.48506 * 109.46795 * 329.99960 * 24 22 20 28 28 C 1.45686 * 119.66008 * 58.89910 * 19 18 17 29 29 C 1.46822 * 135.01068 * 180.02562 * 13 11 10 30 30 H 1.08993 * 111.55968 * 94.49480 * 29 13 11 31 31 H 1.09006 * 109.46492 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47386 * 300.00313 * 1 2 3 33 33 H 1.08998 * 109.46924 * 60.01101 * 1 2 3 34 34 H 1.07998 * 120.02357 * 0.02562 * 4 3 2 35 35 H 1.08003 * 119.97326 * 180.02562 * 5 4 3 36 36 H 1.08993 * 109.47755 * 89.99464 * 7 6 5 37 37 H 1.09002 * 109.47364 * 210.00519 * 7 6 5 38 38 H 1.09008 * 109.46639 * 329.99707 * 7 6 5 39 39 H 1.08006 * 119.97529 * 180.27550 * 8 6 5 40 40 H 1.09003 * 109.46436 * 144.72512 * 10 9 8 41 41 H 1.08997 * 109.47302 * 24.72696 * 10 9 8 42 42 H 1.09005 * 113.82150 * 39.57997 * 14 13 11 43 43 H 1.09001 * 113.82862 * 268.01850 * 14 13 11 44 44 H 1.09002 * 109.47366 * 263.88619 * 17 15 14 45 45 H 1.09008 * 109.47567 * 23.89691 * 17 15 14 46 46 H 1.09004 * 109.75537 * 60.64384 * 18 17 15 47 47 H 1.08994 * 109.75841 * 181.39306 * 18 17 15 48 48 H 0.97005 * 120.00386 * 180.02562 * 23 22 20 49 49 H 1.08993 * 108.71694 * 198.59112 * 28 19 18 50 50 H 1.08995 * 108.71240 * 80.56513 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 -0.0006 5 6 1.9207 3.6048 -0.0012 6 6 3.3017 3.6759 -0.0016 7 6 3.9859 5.0187 -0.0028 8 6 4.0558 2.5173 0.0047 9 6 3.4310 1.2849 -0.0001 10 6 4.2538 0.0223 0.0010 11 6 4.4243 -0.4673 -1.4139 12 8 3.9265 0.1481 -2.3327 13 7 5.1294 -1.5898 -1.6583 14 6 5.8547 -2.5709 -0.8242 15 6 5.5748 -3.5768 -1.9651 16 1 6.3997 -4.2500 -2.1987 17 6 4.2451 -4.2993 -1.7397 18 6 3.5577 -4.5342 -3.0873 19 7 3.3324 -3.2145 -3.7003 20 6 2.0682 -2.8159 -4.0440 21 1 1.2151 -3.2026 -3.5064 22 6 1.8832 -1.9146 -5.0834 23 7 2.8812 -1.6294 -5.8927 24 14 0.2177 -1.1064 -5.3336 25 1 0.1594 0.1581 -4.5572 26 1 0.0223 -0.8113 -6.7758 27 1 -0.8527 -2.0238 -4.8666 28 6 4.4668 -2.3398 -3.9659 29 6 5.4951 -2.3446 -2.8633 30 1 6.4776 -2.0541 -3.2350 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 0.2127 2.3203 -0.0007 35 1 1.3338 4.5114 -0.0013 36 1 4.1511 5.3433 1.0245 37 1 4.9436 4.9381 -0.5169 38 1 3.3576 5.7460 -0.5171 39 1 5.1343 2.5754 0.0088 40 1 3.7467 -0.7412 0.5911 41 1 5.2324 0.2267 0.4352 42 1 5.3490 -2.8134 0.1105 43 1 6.9115 -2.3394 -0.6907 44 1 4.4299 -5.2575 -1.2541 45 1 3.6025 -3.6885 -1.1055 46 1 4.1917 -5.1542 -3.7212 47 1 2.5981 -5.0267 -2.9306 48 1 2.7520 -0.9993 -6.6188 49 1 4.1002 -1.3219 -4.0978 50 1 4.9453 -2.6592 -4.8917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084495366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:36 Heat of formation + Delta-G solvation = -6.301570 kcal Electronic energy + Delta-G solvation = -32117.894436 eV Core-core repulsion = 28111.511789 eV Total energy + Delta-G solvation = -4006.382647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.81193 -41.17937 -39.10117 -38.50811 -36.94216 -34.23919 -33.93753 -32.54548 -31.90647 -30.87061 -28.86744 -28.77087 -28.06121 -26.72009 -25.66537 -24.47108 -23.06925 -22.62908 -21.99116 -20.80359 -19.46568 -18.96378 -18.42356 -17.57630 -17.43924 -17.20456 -16.88835 -16.55355 -16.22919 -15.82152 -15.63020 -15.32567 -15.12711 -14.85942 -14.73308 -14.58041 -14.43692 -14.26741 -14.11261 -13.83524 -13.48653 -13.23849 -13.13551 -13.01082 -12.90932 -12.74212 -12.72420 -12.68275 -12.32039 -12.24828 -12.20871 -11.96215 -11.78753 -11.73354 -11.70876 -11.45734 -11.17999 -10.66355 -10.29500 -9.78722 -9.41019 -8.92709 -8.65157 -7.84576 -5.30796 0.32529 0.46777 1.29326 1.37390 1.41014 1.93466 2.07355 2.38238 2.45647 2.78414 3.31078 3.52189 3.66411 3.72261 3.77106 3.82146 3.96557 4.03766 4.13174 4.27324 4.28638 4.31560 4.37231 4.41194 4.48508 4.56090 4.59344 4.60944 4.64986 4.71054 4.73740 4.75089 4.79736 4.87917 4.91949 4.97922 5.07331 5.08833 5.15668 5.21628 5.34345 5.35300 5.43855 5.47402 5.56508 5.64729 5.74770 5.86298 5.89698 6.40467 6.44907 7.05293 7.19093 7.49352 7.95152 8.37070 9.18753 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.004945 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.108788 B = 5661.043979 C = 7004.485042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.335 6.335 3 C 0.112 3.888 4 C -0.219 4.219 5 C -0.090 4.090 6 C -0.134 4.134 7 C -0.102 4.102 8 C -0.081 4.081 9 C -0.114 4.114 10 C -0.071 4.071 11 C 0.527 3.473 12 O -0.581 6.581 13 N -0.641 5.641 14 C 0.112 3.888 15 C -0.100 4.100 16 H 0.124 0.876 17 C -0.104 4.104 18 C 0.136 3.864 19 N -0.601 5.601 20 C -0.248 4.248 21 H 0.058 0.942 22 C -0.045 4.045 23 N -0.934 5.934 24 Si 0.951 3.049 25 H -0.305 1.305 26 H -0.289 1.289 27 H -0.258 1.258 28 C 0.181 3.819 29 C 0.107 3.893 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.103 0.897 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.117 0.883 44 H 0.099 0.901 45 H 0.041 0.959 46 H 0.030 0.970 47 H 0.050 0.950 48 H 0.242 0.758 49 H 0.052 0.948 50 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.756 3.997 19.912 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.248 6.248 3 C 0.067 3.933 4 C -0.237 4.237 5 C -0.108 4.108 6 C -0.134 4.134 7 C -0.159 4.159 8 C -0.099 4.099 9 C -0.115 4.115 10 C -0.111 4.111 11 C 0.317 3.683 12 O -0.460 6.460 13 N -0.377 5.377 14 C -0.009 4.009 15 C -0.119 4.119 16 H 0.142 0.858 17 C -0.142 4.142 18 C 0.011 3.989 19 N -0.324 5.324 20 C -0.378 4.378 21 H 0.076 0.924 22 C -0.240 4.240 23 N -0.580 5.580 24 Si 0.781 3.219 25 H -0.233 1.233 26 H -0.216 1.216 27 H -0.183 1.183 28 C 0.055 3.945 29 C 0.003 3.997 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.161 0.839 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.116 0.884 43 H 0.135 0.865 44 H 0.117 0.883 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.070 0.930 50 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 5.433 4.388 19.349 20.571 hybrid contribution -1.472 0.752 -1.204 2.045 sum 3.961 5.141 18.145 19.271 Atomic orbital electron populations 1.23198 0.77269 1.04926 1.01540 1.86048 1.22827 1.27405 1.88543 1.19162 0.92539 0.84831 0.96751 1.21440 1.00701 0.92490 1.09100 1.21125 0.94510 0.97245 0.97886 1.20162 0.93835 0.96565 1.02849 1.20726 1.00214 0.91709 1.03228 1.20982 1.00492 0.90401 0.98059 1.18951 0.90541 0.95684 1.06319 1.20352 1.02110 0.95662 0.92926 1.20717 0.77393 0.78556 0.91592 1.90747 1.49572 1.57331 1.48366 1.50039 1.51764 1.24303 1.11566 1.23771 0.98030 0.83627 0.95470 1.22867 0.99312 0.94897 0.94790 0.85832 1.21715 0.94872 1.00418 0.97240 1.21125 0.98159 0.86199 0.93390 1.43865 1.02925 1.13687 1.71937 1.19308 0.85416 1.23468 1.09651 0.92409 1.25651 0.99958 1.02316 0.96067 1.70168 1.32327 1.37449 1.18101 0.85490 0.81501 0.78507 0.76424 1.23303 1.21559 1.18268 1.19680 0.87362 0.95865 0.91637 1.22645 0.97306 0.90619 0.89142 0.89677 0.87313 0.90043 0.94163 0.84342 0.83430 0.89596 0.91434 0.90976 0.83911 0.87907 0.85351 0.88372 0.86546 0.88309 0.94040 0.95236 0.93183 0.94856 0.93003 0.99345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.81 113.37 1.11 1.83 16 2 O -0.33 -12.47 9.63 -92.47 -0.89 -13.36 16 3 C 0.11 4.04 6.66 22.51 0.15 4.19 16 4 C -0.22 -6.76 9.04 22.36 0.20 -6.56 16 5 C -0.09 -2.41 9.69 22.25 0.22 -2.19 16 6 C -0.13 -3.52 5.88 -19.85 -0.12 -3.63 16 7 C -0.10 -1.87 10.01 71.24 0.71 -1.16 16 8 C -0.08 -2.37 9.33 22.25 0.21 -2.16 16 9 C -0.11 -3.86 4.39 -19.77 -0.09 -3.95 16 10 C -0.07 -2.21 5.33 29.10 0.16 -2.05 16 11 C 0.53 22.06 7.98 87.65 0.70 22.76 16 12 O -0.58 -32.20 15.09 -3.01 -0.05 -32.24 16 13 N -0.64 -23.20 3.33 -822.82 -2.74 -25.95 16 14 C 0.11 2.50 7.97 86.34 0.69 3.19 16 15 C -0.10 -2.74 4.39 -10.31 -0.05 -2.79 16 16 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 17 C -0.10 -3.21 5.63 30.63 0.17 -3.04 16 18 C 0.14 5.65 6.54 86.27 0.56 6.22 16 19 N -0.60 -32.47 3.01 -706.21 -2.12 -34.60 16 20 C -0.25 -15.08 9.57 84.03 0.80 -14.27 16 21 H 0.06 3.46 7.86 -2.91 -0.02 3.43 16 22 C -0.04 -2.82 4.99 84.86 0.42 -2.40 16 23 N -0.93 -61.85 10.91 21.65 0.24 -61.61 16 24 Si 0.95 51.25 29.57 68.60 2.03 53.28 16 25 H -0.30 -17.14 7.11 99.48 0.71 -16.43 16 26 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 27 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 28 C 0.18 9.76 4.54 85.81 0.39 10.15 16 29 C 0.11 4.20 4.27 43.75 0.19 4.39 16 30 H 0.09 3.02 8.14 -2.39 -0.02 3.01 16 31 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 32 H 0.08 1.75 7.66 -2.39 -0.02 1.73 16 33 H 0.04 1.24 7.66 -2.39 -0.02 1.22 16 34 H 0.14 3.68 6.30 -2.91 -0.02 3.66 16 35 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 38 H 0.07 1.19 8.09 -2.38 -0.02 1.17 16 39 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.10 3.04 7.69 -2.39 -0.02 3.02 16 41 H 0.13 2.87 8.05 -2.39 -0.02 2.85 16 42 H 0.10 1.80 7.97 -2.38 -0.02 1.78 16 43 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.04 1.47 7.70 -2.38 -0.02 1.45 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.05 2.07 7.91 -2.39 -0.02 2.06 16 48 H 0.24 15.77 8.31 -92.70 -0.77 15.00 16 49 H 0.05 3.37 4.84 -2.39 -0.01 3.36 16 50 H -0.01 -0.66 7.95 -2.39 -0.02 -0.68 16 Total: -1.00 -90.69 398.07 3.82 -86.87 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.93 Total: 19.09 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 6.44 Total: 8.53 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -4.63 Total: -122.16 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.94 Total: -45.60 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.03 Total: 53.28 kcal Total: -90.69 3.82 -86.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084495366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.566 kcal (2) G-P(sol) polarization free energy of solvation -90.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds