Wall clock time and date at job start Wed Apr 1 2020 03:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00396 * 2 1 4 4 C 1.38754 * 120.05168 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94388 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05362 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94491 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47220 * 264.99942 * 7 6 5 9 9 O 1.21284 * 119.99888 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99797 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99439 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.56387 * 33.04266 * 11 10 8 13 13 C 1.54853 * 110.62275 * 155.94346 * 11 10 8 14 14 C 1.55858 * 103.44284 * 118.64743 * 13 11 10 15 15 H 1.08996 * 115.55597 * 159.56322 * 14 13 11 16 16 C 1.55839 * 105.06010 * 288.17415 * 14 13 11 17 17 C 1.54853 * 103.44648 * 71.82850 * 16 14 13 18 18 C 1.55843 * 103.44744 * 359.97438 * 17 16 14 19 19 H 1.08998 * 115.56679 * 159.56649 * 18 17 16 20 20 N 1.50240 * 101.04645 * 32.93863 * 14 13 11 21 21 C 1.36942 * 130.83529 * 126.05846 * 20 14 13 22 22 H 1.07993 * 119.99451 * 180.02562 * 21 20 14 23 23 C 1.38810 * 119.99960 * 0.02562 * 21 20 14 24 24 N 1.31623 * 120.00173 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99812 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46745 * 90.00598 * 25 23 21 27 27 H 1.48496 * 109.47048 * 210.00319 * 25 23 21 28 28 H 1.48495 * 109.47019 * 330.00473 * 25 23 21 29 29 C 1.38247 * 120.11319 * 0.25423 * 6 5 4 30 30 C 1.50699 * 119.96860 * 179.70599 * 29 6 5 31 31 C 1.38169 * 120.05427 * 359.45114 * 29 6 5 32 32 H 1.09000 * 109.47353 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47380 * 300.00641 * 1 2 3 34 34 H 1.08999 * 109.46746 * 60.00157 * 1 2 3 35 35 H 1.08001 * 120.02790 * 0.03525 * 4 3 2 36 36 H 1.07994 * 119.97153 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47126 * 144.99876 * 7 6 5 38 38 H 1.09002 * 109.47045 * 24.99970 * 7 6 5 39 39 H 0.96996 * 119.99898 * 0.02562 * 10 8 7 40 40 H 1.08994 * 110.62862 * 237.12959 * 13 11 10 41 41 H 1.08995 * 110.62929 * 0.02562 * 13 11 10 42 42 H 1.09001 * 110.62122 * 190.31154 * 16 14 13 43 43 H 1.08997 * 110.63064 * 313.33455 * 16 14 13 44 44 H 1.09002 * 110.63088 * 118.48746 * 17 16 14 45 45 H 1.09006 * 110.62538 * 241.50384 * 17 16 14 46 46 H 0.96998 * 120.00100 * 179.97438 * 24 23 21 47 47 H 1.09005 * 109.47552 * 90.00377 * 30 29 6 48 48 H 1.09002 * 109.46831 * 209.99679 * 30 29 6 49 49 H 1.09000 * 109.47487 * 329.99727 * 30 29 6 50 50 H 1.08002 * 120.02563 * 180.25549 * 31 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 6 4.3230 5.4094 -1.4187 9 8 4.0353 4.6707 -2.3365 10 7 4.9430 6.5805 -1.6650 11 6 5.2699 6.9607 -3.0416 12 1 4.5170 6.5815 -3.7326 13 6 5.3996 8.4987 -3.1664 14 6 6.8770 8.7023 -3.6190 15 1 7.0952 9.6575 -4.0965 16 6 7.7354 8.3670 -2.3623 17 6 7.6057 6.8290 -2.2375 18 6 6.6861 6.4444 -3.4354 19 1 6.7357 5.4023 -3.7509 20 7 7.0946 7.4718 -4.4531 21 6 7.5313 7.3302 -5.7433 22 1 7.6243 6.3455 -6.1768 23 6 7.8542 8.4524 -6.4938 24 7 7.7412 9.6526 -5.9652 25 14 8.4491 8.2594 -8.2540 26 1 7.2849 8.2844 -9.1755 27 1 9.3704 9.3744 -8.5902 28 1 9.1648 6.9660 -8.3956 29 6 4.0560 2.5170 -0.0080 30 6 5.5608 2.5982 -0.0164 31 6 3.4311 1.2847 -0.0013 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 0.2128 2.3203 0.0015 36 1 1.3341 4.5113 0.0000 37 1 4.9019 4.9601 0.5857 38 1 3.3218 5.7652 0.4321 39 1 5.1728 7.1714 -0.9310 40 1 4.7111 8.8823 -3.9193 41 1 5.2211 8.9785 -2.2041 42 1 8.7753 8.6531 -2.5202 43 1 7.3306 8.8595 -1.4782 44 1 8.5812 6.3523 -2.3334 45 1 7.1365 6.5587 -1.2914 46 1 7.9672 10.4367 -6.4895 47 1 5.9295 2.6158 1.0092 48 1 5.9685 1.7299 -0.5341 49 1 5.8728 3.5073 -0.5304 50 1 4.0207 0.3798 -0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095464495.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:05 Heat of formation + Delta-G solvation = -23.576747 kcal Electronic energy + Delta-G solvation = -30478.720501 eV Core-core repulsion = 26471.588746 eV Total energy + Delta-G solvation = -4007.131755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60040 -41.05746 -39.86379 -38.49567 -35.37509 -34.19647 -33.58385 -33.08826 -30.99224 -30.75442 -29.81715 -28.92352 -27.44354 -27.20870 -26.00302 -23.39990 -22.82612 -22.19403 -21.45857 -20.95785 -20.09049 -18.92987 -18.66604 -17.98628 -17.50313 -16.96926 -16.82530 -16.63263 -16.38551 -16.05823 -15.88177 -15.50408 -15.07580 -14.86495 -14.67203 -14.25326 -14.17348 -14.01704 -13.87678 -13.46402 -13.22974 -13.11752 -13.04120 -12.95071 -12.83005 -12.78123 -12.67226 -12.55855 -12.34499 -12.21773 -11.99645 -11.88444 -11.79016 -11.67321 -11.53467 -11.15850 -11.02521 -10.75149 -10.72640 -9.90843 -9.69592 -9.00271 -8.84046 -7.79817 -5.18460 0.40561 0.45226 1.45177 1.46474 1.54532 1.80525 2.28067 2.38942 2.50837 2.85339 3.33835 3.54665 3.76596 3.84317 3.94434 3.98545 4.10908 4.16643 4.21683 4.24166 4.34599 4.37998 4.39953 4.44101 4.47231 4.51991 4.63862 4.65092 4.69221 4.74567 4.75795 4.82921 4.85275 4.87119 5.00908 5.06239 5.10536 5.18073 5.21028 5.29899 5.36100 5.37391 5.43649 5.49575 5.58925 5.71287 5.81056 5.87052 5.91757 6.27760 6.47123 6.76953 7.06381 7.47025 7.69536 8.55919 9.27127 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.002366 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.542755 B =11830.150169 C =12316.099323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.114 3.886 4 C -0.220 4.220 5 C -0.073 4.073 6 C -0.115 4.115 7 C -0.089 4.089 8 C 0.509 3.491 9 O -0.584 6.584 10 N -0.700 5.700 11 C 0.148 3.852 12 H 0.047 0.953 13 C -0.127 4.127 14 C 0.139 3.861 15 H 0.117 0.883 16 C -0.125 4.125 17 C -0.114 4.114 18 C 0.118 3.882 19 H 0.062 0.938 20 N -0.619 5.619 21 C -0.224 4.224 22 H 0.069 0.931 23 C -0.064 4.064 24 N -0.943 5.943 25 Si 0.974 3.026 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.277 1.277 29 C -0.040 4.040 30 C -0.116 4.116 31 C -0.174 4.174 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.416 0.584 40 H 0.041 0.959 41 H 0.099 0.901 42 H 0.033 0.967 43 H 0.090 0.910 44 H 0.040 0.960 45 H 0.093 0.907 46 H 0.249 0.751 47 H 0.098 0.902 48 H 0.065 0.935 49 H 0.061 0.939 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 -10.655 21.223 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.068 3.932 4 C -0.239 4.239 5 C -0.091 4.091 6 C -0.116 4.116 7 C -0.129 4.129 8 C 0.297 3.703 9 O -0.463 6.463 10 N -0.353 5.353 11 C 0.041 3.959 12 H 0.065 0.935 13 C -0.166 4.166 14 C 0.033 3.967 15 H 0.135 0.865 16 C -0.165 4.165 17 C -0.154 4.154 18 C 0.010 3.990 19 H 0.081 0.919 20 N -0.341 5.341 21 C -0.353 4.353 22 H 0.087 0.913 23 C -0.257 4.257 24 N -0.593 5.593 25 Si 0.803 3.197 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.202 1.202 29 C -0.040 4.040 30 C -0.172 4.172 31 C -0.193 4.193 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.254 0.746 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.052 0.948 43 H 0.108 0.892 44 H 0.059 0.941 45 H 0.111 0.889 46 H 0.058 0.942 47 H 0.117 0.883 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.025 -11.269 20.285 26.136 hybrid contribution 0.194 0.162 -1.460 1.482 sum -11.831 -11.107 18.825 24.854 Atomic orbital electron populations 1.23312 0.76594 1.05462 1.02119 1.86024 1.23398 1.27028 1.88829 1.19185 0.92549 0.84733 0.96685 1.21388 1.00899 0.91994 1.09595 1.21078 0.93940 0.97898 0.96169 1.19317 0.93650 0.94082 1.04561 1.20691 1.04247 0.95417 0.92516 1.21232 0.76412 0.80600 0.92100 1.90727 1.54745 1.52567 1.48263 1.45986 1.59664 1.21149 1.08489 1.21975 0.95813 0.95384 0.82745 0.93513 1.23132 0.99032 0.93355 1.01103 1.23624 0.91328 0.93049 0.88696 0.86546 1.22948 0.99301 0.95642 0.98569 1.22812 0.98386 0.96148 0.98017 1.23312 0.93864 0.92139 0.89728 0.91948 1.46726 1.75411 1.02838 1.09116 1.19278 1.35333 0.92855 0.87850 0.91346 1.25397 1.03359 0.94997 1.01904 1.69693 1.55878 0.97155 1.36555 0.85133 0.77465 0.76873 0.80200 1.21741 1.21633 1.20204 1.19755 0.96904 0.91755 0.95581 1.20873 0.89903 1.02925 1.03529 1.20422 0.91837 0.98457 1.08562 0.86332 0.91382 0.92390 0.83672 0.84012 0.85322 0.85009 0.74626 0.94038 0.88284 0.94782 0.89151 0.94080 0.88910 0.94163 0.88349 0.91556 0.91977 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.38 10.50 -92.44 -0.97 -8.35 16 3 C 0.11 2.69 6.69 22.51 0.15 2.84 16 4 C -0.22 -4.58 9.04 22.37 0.20 -4.38 16 5 C -0.07 -1.51 9.67 22.25 0.22 -1.30 16 6 C -0.12 -2.52 4.37 -19.85 -0.09 -2.61 16 7 C -0.09 -1.51 5.15 29.10 0.15 -1.36 16 8 C 0.51 13.51 7.02 87.66 0.62 14.13 16 9 O -0.58 -22.15 15.70 -3.04 -0.05 -22.20 16 10 N -0.70 -17.43 3.72 -434.98 -1.62 -19.05 16 11 C 0.15 5.34 3.13 46.59 0.15 5.49 16 12 H 0.05 2.03 7.58 -2.39 -0.02 2.02 16 13 C -0.13 -4.57 6.20 32.22 0.20 -4.37 16 14 C 0.14 6.16 4.69 46.23 0.22 6.38 16 15 H 0.12 6.08 5.57 -2.39 -0.01 6.07 16 16 C -0.13 -4.43 6.44 32.21 0.21 -4.22 16 17 C -0.11 -3.83 6.32 32.21 0.20 -3.63 16 18 C 0.12 4.89 5.35 46.20 0.25 5.14 16 19 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 20 N -0.62 -31.47 2.99 -615.26 -1.84 -33.31 16 21 C -0.22 -12.84 10.59 84.03 0.89 -11.95 16 22 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 23 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 24 N -0.94 -55.07 10.48 21.65 0.23 -54.84 16 25 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 29 C -0.04 -0.92 5.88 -19.88 -0.12 -1.04 16 30 C -0.12 -2.25 9.21 71.24 0.66 -1.59 16 31 C -0.17 -4.24 9.64 22.37 0.22 -4.02 16 32 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.66 7.66 -2.39 -0.02 0.65 16 34 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 35 H 0.15 2.25 6.30 -2.91 -0.02 2.23 16 36 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.13 1.49 7.00 -2.39 -0.02 1.47 16 38 H 0.13 1.37 8.05 -2.39 -0.02 1.35 16 39 H 0.42 6.99 7.93 -92.71 -0.73 6.26 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.10 2.65 7.39 -2.39 -0.02 2.64 16 42 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 2.39 7.82 -2.39 -0.02 2.37 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 2.32 6.40 -2.38 -0.02 2.30 16 46 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 47 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 49 H 0.06 1.32 6.14 -2.39 -0.01 1.31 16 50 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -76.89 393.64 3.69 -73.20 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.22 Total: 24.14 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 5.69 Total: -8.31 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -3.23 Total: -107.20 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.02 Total: -30.55 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -76.89 3.69 -73.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095464495.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.621 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds