Wall clock time and date at job start Wed Apr 1 2020 03:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35901 * 117.00190 * 2 1 4 4 C 1.38759 * 120.05196 * 0.03030 * 3 2 1 5 5 C 1.38124 * 119.93743 * 179.67948 * 4 3 2 6 6 C 1.38282 * 120.06047 * 0.56713 * 5 4 3 7 7 C 1.50692 * 119.94647 * 179.72767 * 6 5 4 8 8 C 1.38249 * 120.10877 * 359.44769 * 6 5 4 9 9 C 1.38166 * 120.05736 * 0.25843 * 8 6 5 10 10 C 1.50692 * 120.02914 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.47451 * 264.99936 * 10 9 8 12 12 O 1.21287 * 119.99617 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00353 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99893 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.55856 * 36.96953 * 14 13 11 16 16 C 1.54854 * 110.62688 * 160.04460 * 14 13 11 17 17 C 1.55840 * 103.44689 * 118.48755 * 16 14 13 18 18 H 1.09001 * 116.12856 * 159.14825 * 17 16 14 19 19 C 1.55844 * 105.06568 * 288.17727 * 17 16 14 20 20 C 1.54850 * 103.44326 * 71.82380 * 19 17 16 21 21 C 1.55841 * 103.44673 * 0.02562 * 20 19 17 22 22 H 1.09010 * 116.12571 * 159.15040 * 21 20 19 23 23 N 1.50236 * 101.05302 * 32.93970 * 21 20 19 24 24 C 1.36930 * 130.84323 * 126.05409 * 23 21 20 25 25 H 1.08005 * 119.99876 * 359.97438 * 24 23 21 26 26 C 1.38813 * 120.00204 * 180.02562 * 24 23 21 27 27 N 1.31615 * 119.99965 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99822 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.46732 * 90.00192 * 28 26 24 30 30 H 1.48501 * 109.46874 * 209.99394 * 28 26 24 31 31 H 1.48492 * 109.47237 * 329.99951 * 28 26 24 32 32 H 1.09002 * 109.47277 * 299.99687 * 1 2 3 33 33 H 1.09003 * 109.47472 * 59.99807 * 1 2 3 34 34 H 1.09004 * 109.47175 * 179.97438 * 1 2 3 35 35 H 1.07991 * 120.02828 * 359.97438 * 4 3 2 36 36 H 1.08000 * 119.96763 * 180.31833 * 5 4 3 37 37 H 1.09007 * 109.46967 * 269.72483 * 7 6 5 38 38 H 1.08995 * 109.47428 * 29.72241 * 7 6 5 39 39 H 1.08998 * 109.47573 * 149.72549 * 7 6 5 40 40 H 1.07997 * 119.96964 * 180.27093 * 8 6 5 41 41 H 1.09006 * 109.47117 * 24.99951 * 10 9 8 42 42 H 1.09001 * 109.47407 * 144.99846 * 10 9 8 43 43 H 0.96999 * 120.00012 * 359.97438 * 13 11 10 44 44 H 1.08998 * 110.62720 * 236.97994 * 16 14 13 45 45 H 1.09009 * 110.62255 * 359.97438 * 16 14 13 46 46 H 1.09002 * 110.62610 * 190.31380 * 19 17 16 47 47 H 1.08998 * 110.62793 * 313.17873 * 19 17 16 48 48 H 1.09002 * 110.62557 * 241.50832 * 20 19 17 49 49 H 1.09004 * 110.62570 * 118.49549 * 20 19 17 50 50 H 0.96996 * 120.00079 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9209 3.6047 0.0073 6 6 3.3019 3.6758 0.0015 7 6 3.9860 5.0185 0.0027 8 6 4.0559 2.5171 0.0006 9 6 3.4311 1.2848 0.0000 10 6 4.2537 0.0221 -0.0016 11 6 4.4231 -0.4652 -1.4175 12 8 3.9245 0.1518 -2.3350 13 7 5.1278 -1.5873 -1.6642 14 6 5.2921 -2.0613 -3.0407 15 1 5.4078 -1.2200 -3.7240 16 6 6.5004 -3.0240 -3.1456 17 6 5.8572 -4.3629 -3.6172 18 1 6.5296 -5.0774 -4.0921 19 6 5.0760 -4.8955 -2.3784 20 6 3.8677 -3.9328 -2.2736 21 6 4.0830 -2.9500 -3.4637 22 1 3.2000 -2.4106 -3.8067 23 7 4.7299 -3.8564 -4.4723 24 6 4.3957 -4.1345 -5.7707 25 1 3.5339 -3.6628 -6.2194 26 6 5.1639 -5.0234 -6.5100 27 7 6.2138 -5.5986 -5.9631 28 14 4.7075 -5.4033 -8.2811 29 1 5.3931 -4.4454 -9.1852 30 1 5.1293 -6.7875 -8.6149 31 1 3.2376 -5.2791 -8.4510 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 0.2128 2.3203 0.0007 36 1 1.3340 4.5113 0.0130 37 1 4.1509 5.3431 -1.0248 38 1 3.3581 5.7458 0.5171 39 1 4.9440 4.9378 0.5163 40 1 5.1343 2.5752 0.0005 41 1 5.2327 0.2258 0.4322 42 1 3.7471 -0.7423 0.5876 43 1 5.5263 -2.0810 -0.9305 44 1 7.2171 -2.6618 -3.8825 45 1 6.9778 -3.1484 -2.1735 46 1 4.7387 -5.9181 -2.5477 47 1 5.6934 -4.8396 -1.4819 48 1 3.8849 -3.3969 -1.3246 49 1 2.9311 -4.4780 -2.3908 50 1 6.7508 -6.2195 -6.4797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095709479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:10 Heat of formation + Delta-G solvation = -4.361467 kcal Electronic energy + Delta-G solvation = -30815.420209 eV Core-core repulsion = 26809.121691 eV Total energy + Delta-G solvation = -4006.298518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.55385 -39.72542 -38.20070 -37.65949 -33.79099 -33.30155 -32.26508 -31.69668 -29.37663 -29.02425 -28.32625 -27.98474 -26.89106 -25.92192 -24.13287 -22.34565 -21.52824 -21.01300 -20.10066 -19.40320 -18.49258 -18.05741 -17.11091 -16.65280 -16.57207 -15.72947 -15.50542 -15.02149 -14.90379 -14.72309 -14.46180 -14.19769 -13.94907 -13.81346 -13.75896 -13.46432 -13.16317 -12.52231 -12.34869 -12.24757 -12.13848 -12.05093 -11.88229 -11.68622 -11.44270 -11.37965 -10.99638 -10.95339 -10.89341 -10.86430 -10.83853 -10.78018 -10.16105 -10.05462 -9.78125 -9.55485 -9.30547 -9.20482 -8.89548 -8.87941 -8.39239 -8.04410 -6.86774 -5.69289 -3.06752 1.22957 1.35879 3.04697 3.21871 3.41790 3.45260 3.47420 3.49199 3.84478 4.49253 4.55626 4.66472 4.76095 4.90321 5.03587 5.11195 5.14774 5.16924 5.26355 5.28688 5.36719 5.42309 5.44991 5.47090 5.51337 5.60659 5.65611 5.77990 5.87175 5.90610 5.98616 6.03923 6.13443 6.18192 6.21626 6.30485 6.38206 6.40141 6.50691 6.59708 6.67234 6.71361 6.77445 6.89101 7.03569 7.07038 7.32156 7.33651 7.56905 7.80398 7.97307 8.21151 8.67509 9.14340 9.76774 10.58068 11.40503 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.002613 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.516531 B =10712.477087 C =10813.472425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.140 3.860 4 C -0.206 4.206 5 C -0.083 4.083 6 C -0.126 4.126 7 C -0.107 4.107 8 C -0.070 4.070 9 C -0.088 4.088 10 C -0.095 4.095 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.715 5.715 14 C 0.129 3.871 15 H 0.079 0.921 16 C -0.140 4.140 17 C 0.154 3.846 18 H 0.154 0.846 19 C -0.137 4.137 20 C -0.128 4.128 21 C 0.129 3.871 22 H 0.083 0.917 23 N -0.591 5.591 24 C -0.207 4.207 25 H 0.078 0.922 26 C -0.013 4.013 27 N -0.924 5.924 28 Si 0.916 3.084 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.282 1.282 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.394 0.606 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.045 0.955 48 H 0.052 0.948 49 H 0.049 0.951 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 14.634 18.340 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C 0.094 3.906 4 C -0.224 4.224 5 C -0.101 4.101 6 C -0.127 4.127 7 C -0.164 4.164 8 C -0.088 4.088 9 C -0.089 4.089 10 C -0.135 4.135 11 C 0.299 3.701 12 O -0.411 6.411 13 N -0.366 5.366 14 C 0.024 3.976 15 H 0.097 0.903 16 C -0.180 4.180 17 C 0.047 3.953 18 H 0.171 0.829 19 C -0.176 4.176 20 C -0.168 4.168 21 C 0.020 3.980 22 H 0.101 0.899 23 N -0.312 5.312 24 C -0.336 4.336 25 H 0.096 0.904 26 C -0.208 4.208 27 N -0.573 5.573 28 Si 0.747 3.253 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.208 1.208 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.144 0.856 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.228 0.772 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.454 14.716 17.337 23.385 hybrid contribution -0.423 -0.296 -0.552 0.756 sum -5.877 14.419 16.786 22.896 Atomic orbital electron populations 1.23038 0.78532 1.03996 1.01049 1.86085 1.21204 1.26717 1.88362 1.18758 0.91669 0.84293 0.95835 1.21145 0.99828 0.92314 1.09144 1.20748 0.93909 0.96849 0.98617 1.19729 0.93625 0.95362 1.03940 1.20695 1.00100 0.93421 1.02184 1.20699 0.99530 0.90551 0.98045 1.18611 0.90256 0.94594 1.05472 1.20500 1.00886 0.96259 0.95865 1.20373 0.78463 0.80663 0.90644 1.90704 1.47498 1.56680 1.46260 1.46223 1.54389 1.26203 1.09812 1.22586 0.97732 0.96520 0.80811 0.90266 1.23276 0.96042 0.99088 0.99586 1.23758 0.90663 0.93295 0.87570 0.82929 1.23050 0.97136 0.98813 0.98644 1.22877 0.98177 0.97830 0.97906 1.23188 0.94237 0.91106 0.89422 0.89871 1.46496 1.28811 1.47426 1.08430 1.19067 1.08816 1.20262 0.85412 0.90385 1.24686 0.97821 0.99807 0.98531 1.69435 1.18828 1.33476 1.35559 0.86034 0.77706 0.77287 0.84278 1.21681 1.21710 1.20796 0.92924 0.92655 0.88224 0.85602 0.86089 0.91432 0.91909 0.91758 0.85598 0.88453 0.87912 0.77234 0.91732 0.92749 0.92772 0.93678 0.92945 0.93261 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.10 9.63 -19.43 -0.19 -4.29 16 3 C 0.14 1.86 6.66 -39.21 -0.26 1.60 16 4 C -0.21 -2.36 9.04 -39.43 -0.36 -2.71 16 5 C -0.08 -0.88 9.69 -39.61 -0.38 -1.26 16 6 C -0.13 -1.37 5.88 -104.61 -0.62 -1.98 16 7 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 8 C -0.07 -0.83 9.33 -39.60 -0.37 -1.19 16 9 C -0.09 -1.16 4.39 -104.48 -0.46 -1.61 16 10 C -0.10 -1.13 5.55 -29.04 -0.16 -1.29 16 11 C 0.51 8.18 7.82 -10.99 -0.09 8.10 16 12 O -0.54 -10.95 15.76 5.55 0.09 -10.86 16 13 N -0.71 -10.90 3.63 -51.36 -0.19 -11.08 16 14 C 0.13 2.50 3.08 -65.40 -0.20 2.30 16 15 H 0.08 1.74 7.70 -51.93 -0.40 1.34 16 16 C -0.14 -2.70 6.20 -24.24 -0.15 -2.86 16 17 C 0.15 3.51 4.72 -62.78 -0.30 3.21 16 18 H 0.15 3.98 5.52 -51.93 -0.29 3.69 16 19 C -0.14 -2.69 6.44 -24.24 -0.16 -2.84 16 20 C -0.13 -2.44 6.32 -24.24 -0.15 -2.60 16 21 C 0.13 2.82 5.35 -62.77 -0.34 2.48 16 22 H 0.08 1.92 8.14 -51.92 -0.42 1.50 16 23 N -0.59 -15.05 2.99 -145.75 -0.44 -15.49 16 24 C -0.21 -5.84 10.59 -15.06 -0.16 -5.99 16 25 H 0.08 2.17 7.83 -52.48 -0.41 1.75 16 26 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 27 N -0.92 -26.50 10.47 55.49 0.58 -25.92 16 28 Si 0.92 22.34 29.55 -169.99 -5.02 17.32 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 30 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 31 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 32 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 33 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 42 H 0.10 1.12 7.69 -51.93 -0.40 0.72 16 43 H 0.39 4.84 8.02 -40.82 -0.33 4.51 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.05 0.87 7.34 -51.92 -0.38 0.49 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.04 0.74 7.82 -51.93 -0.41 0.34 16 48 H 0.05 0.86 6.48 -51.93 -0.34 0.53 16 49 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -33.57 397.26 -9.92 -43.49 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.85 Total: 7.21 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.89 Total: -6.36 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.04 Total: -52.49 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.10 Total: -15.15 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.57 -9.92 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095709479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.125 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds