Wall clock time and date at job start Wed Apr 1 2020 03:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35901 * 117.00190 * 2 1 4 4 C 1.38759 * 120.05196 * 0.03030 * 3 2 1 5 5 C 1.38124 * 119.93743 * 179.67948 * 4 3 2 6 6 C 1.38282 * 120.06047 * 0.56713 * 5 4 3 7 7 C 1.50692 * 119.94647 * 179.72767 * 6 5 4 8 8 C 1.38249 * 120.10877 * 359.44769 * 6 5 4 9 9 C 1.38166 * 120.05736 * 0.25843 * 8 6 5 10 10 C 1.50692 * 120.02914 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.47451 * 264.99936 * 10 9 8 12 12 O 1.21287 * 119.99617 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00353 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99893 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.55856 * 36.96953 * 14 13 11 16 16 C 1.54854 * 110.62688 * 160.04460 * 14 13 11 17 17 C 1.55840 * 103.44689 * 118.48755 * 16 14 13 18 18 H 1.09001 * 116.12856 * 159.14825 * 17 16 14 19 19 C 1.55844 * 105.06568 * 288.17727 * 17 16 14 20 20 C 1.54850 * 103.44326 * 71.82380 * 19 17 16 21 21 C 1.55841 * 103.44673 * 0.02562 * 20 19 17 22 22 H 1.09010 * 116.12571 * 159.15040 * 21 20 19 23 23 N 1.50236 * 101.05302 * 32.93970 * 21 20 19 24 24 C 1.36930 * 130.84323 * 126.05409 * 23 21 20 25 25 H 1.08005 * 119.99876 * 359.97438 * 24 23 21 26 26 C 1.38813 * 120.00204 * 180.02562 * 24 23 21 27 27 N 1.31615 * 119.99965 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99822 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.46732 * 90.00192 * 28 26 24 30 30 H 1.48501 * 109.46874 * 209.99394 * 28 26 24 31 31 H 1.48492 * 109.47237 * 329.99951 * 28 26 24 32 32 H 1.09002 * 109.47277 * 299.99687 * 1 2 3 33 33 H 1.09003 * 109.47472 * 59.99807 * 1 2 3 34 34 H 1.09004 * 109.47175 * 179.97438 * 1 2 3 35 35 H 1.07991 * 120.02828 * 359.97438 * 4 3 2 36 36 H 1.08000 * 119.96763 * 180.31833 * 5 4 3 37 37 H 1.09007 * 109.46967 * 269.72483 * 7 6 5 38 38 H 1.08995 * 109.47428 * 29.72241 * 7 6 5 39 39 H 1.08998 * 109.47573 * 149.72549 * 7 6 5 40 40 H 1.07997 * 119.96964 * 180.27093 * 8 6 5 41 41 H 1.09006 * 109.47117 * 24.99951 * 10 9 8 42 42 H 1.09001 * 109.47407 * 144.99846 * 10 9 8 43 43 H 0.96999 * 120.00012 * 359.97438 * 13 11 10 44 44 H 1.08998 * 110.62720 * 236.97994 * 16 14 13 45 45 H 1.09009 * 110.62255 * 359.97438 * 16 14 13 46 46 H 1.09002 * 110.62610 * 190.31380 * 19 17 16 47 47 H 1.08998 * 110.62793 * 313.17873 * 19 17 16 48 48 H 1.09002 * 110.62557 * 241.50832 * 20 19 17 49 49 H 1.09004 * 110.62570 * 118.49549 * 20 19 17 50 50 H 0.96996 * 120.00079 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9209 3.6047 0.0073 6 6 3.3019 3.6758 0.0015 7 6 3.9860 5.0185 0.0027 8 6 4.0559 2.5171 0.0006 9 6 3.4311 1.2848 0.0000 10 6 4.2537 0.0221 -0.0016 11 6 4.4231 -0.4652 -1.4175 12 8 3.9245 0.1518 -2.3350 13 7 5.1278 -1.5873 -1.6642 14 6 5.2921 -2.0613 -3.0407 15 1 5.4078 -1.2200 -3.7240 16 6 6.5004 -3.0240 -3.1456 17 6 5.8572 -4.3629 -3.6172 18 1 6.5296 -5.0774 -4.0921 19 6 5.0760 -4.8955 -2.3784 20 6 3.8677 -3.9328 -2.2736 21 6 4.0830 -2.9500 -3.4637 22 1 3.2000 -2.4106 -3.8067 23 7 4.7299 -3.8564 -4.4723 24 6 4.3957 -4.1345 -5.7707 25 1 3.5339 -3.6628 -6.2194 26 6 5.1639 -5.0234 -6.5100 27 7 6.2138 -5.5986 -5.9631 28 14 4.7075 -5.4033 -8.2811 29 1 5.3931 -4.4454 -9.1852 30 1 5.1293 -6.7875 -8.6149 31 1 3.2376 -5.2791 -8.4510 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 0.2128 2.3203 0.0007 36 1 1.3340 4.5113 0.0130 37 1 4.1509 5.3431 -1.0248 38 1 3.3581 5.7458 0.5171 39 1 4.9440 4.9378 0.5163 40 1 5.1343 2.5752 0.0005 41 1 5.2327 0.2258 0.4322 42 1 3.7471 -0.7423 0.5876 43 1 5.5263 -2.0810 -0.9305 44 1 7.2171 -2.6618 -3.8825 45 1 6.9778 -3.1484 -2.1735 46 1 4.7387 -5.9181 -2.5477 47 1 5.6934 -4.8396 -1.4819 48 1 3.8849 -3.3969 -1.3246 49 1 2.9311 -4.4780 -2.3908 50 1 6.7508 -6.2195 -6.4797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095709479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:09 Heat of formation + Delta-G solvation = -24.050279 kcal Electronic energy + Delta-G solvation = -30816.273979 eV Core-core repulsion = 26809.121691 eV Total energy + Delta-G solvation = -4007.152289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.62119 -41.06161 -39.60185 -38.51630 -35.39700 -34.30366 -34.06145 -32.47897 -31.01579 -30.80422 -29.69815 -28.71951 -28.21018 -26.68196 -26.06887 -23.36441 -22.78311 -22.25619 -21.47210 -20.93145 -20.12811 -19.00877 -18.82824 -17.97952 -17.45008 -16.87124 -16.80520 -16.54995 -16.40394 -15.94485 -15.77569 -15.41341 -15.17641 -14.85518 -14.70214 -14.44955 -14.10564 -14.07608 -13.84552 -13.48816 -13.22233 -13.17027 -12.97472 -12.91201 -12.81638 -12.78160 -12.63273 -12.59542 -12.35022 -12.18659 -12.00113 -11.90328 -11.73205 -11.67738 -11.53904 -11.18401 -11.04368 -10.78501 -10.77414 -9.91920 -9.76234 -8.88817 -8.85502 -7.80385 -5.19477 0.37869 0.51587 1.44654 1.46224 1.54361 1.80653 2.28674 2.43343 2.50377 2.87658 3.32854 3.53682 3.70734 3.87838 3.92827 4.02169 4.08474 4.14424 4.18691 4.24963 4.36746 4.37347 4.42665 4.45587 4.48431 4.51632 4.62349 4.63846 4.69740 4.72402 4.78830 4.81859 4.83169 4.89765 4.98816 5.08445 5.13290 5.15943 5.22884 5.28698 5.33668 5.39913 5.46592 5.48362 5.57202 5.71126 5.78821 5.89943 5.93302 6.27710 6.49112 6.75308 7.05361 7.45539 7.68347 8.55109 9.26557 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.002613 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.516531 B =10712.477087 C =10813.472425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.216 4.216 5 C -0.089 4.089 6 C -0.136 4.136 7 C -0.106 4.106 8 C -0.082 4.082 9 C -0.113 4.113 10 C -0.084 4.084 11 C 0.513 3.487 12 O -0.585 6.585 13 N -0.700 5.700 14 C 0.149 3.851 15 H 0.046 0.954 16 C -0.124 4.124 17 C 0.138 3.862 18 H 0.121 0.879 19 C -0.125 4.125 20 C -0.113 4.113 21 C 0.119 3.881 22 H 0.057 0.943 23 N -0.619 5.619 24 C -0.226 4.226 25 H 0.068 0.932 26 C -0.062 4.062 27 N -0.943 5.943 28 Si 0.975 3.025 29 H -0.289 1.289 30 H -0.289 1.289 31 H -0.277 1.277 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.118 0.882 43 H 0.415 0.585 44 H 0.045 0.955 45 H 0.099 0.901 46 H 0.034 0.966 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.038 0.962 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 15.637 20.980 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.234 4.234 5 C -0.107 4.107 6 C -0.136 4.136 7 C -0.162 4.162 8 C -0.100 4.100 9 C -0.115 4.115 10 C -0.123 4.123 11 C 0.301 3.699 12 O -0.465 6.465 13 N -0.353 5.353 14 C 0.041 3.959 15 H 0.064 0.936 16 C -0.164 4.164 17 C 0.032 3.968 18 H 0.138 0.862 19 C -0.164 4.164 20 C -0.152 4.152 21 C 0.011 3.989 22 H 0.075 0.925 23 N -0.341 5.341 24 C -0.355 4.355 25 H 0.085 0.915 26 C -0.255 4.255 27 N -0.593 5.593 28 Si 0.804 3.196 29 H -0.216 1.216 30 H -0.215 1.215 31 H -0.203 1.203 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.136 0.864 43 H 0.252 0.748 44 H 0.063 0.937 45 H 0.118 0.882 46 H 0.053 0.947 47 H 0.108 0.892 48 H 0.105 0.895 49 H 0.057 0.943 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.225 15.721 20.045 26.005 hybrid contribution -0.559 -0.523 -1.368 1.568 sum -5.784 15.198 18.677 24.764 Atomic orbital electron populations 1.23247 0.77039 1.05099 1.01866 1.86025 1.22937 1.27117 1.88609 1.19072 0.92274 0.84832 0.96769 1.21443 1.00820 0.92294 1.08869 1.21120 0.94321 0.97494 0.97805 1.20136 0.93998 0.96408 1.03044 1.20736 1.00757 0.92238 1.02477 1.21005 1.00510 0.90587 0.97931 1.18902 0.90613 0.95483 1.06453 1.20505 1.02886 0.96182 0.92724 1.21151 0.76987 0.79860 0.91947 1.90692 1.49384 1.58104 1.48277 1.45966 1.54427 1.26368 1.08545 1.22004 0.96424 0.94858 0.82566 0.93583 1.23108 0.95381 0.96671 1.01237 1.23696 0.90272 0.94438 0.88346 0.86164 1.22946 0.97190 0.97471 0.98776 1.22772 0.97556 0.96936 0.97981 1.23295 0.94159 0.91690 0.89764 0.92458 1.46755 1.30312 1.48719 1.08361 1.19280 1.08679 1.20321 0.87227 0.91458 1.25401 0.98098 1.00044 1.01976 1.69659 1.19399 1.33778 1.36428 0.85114 0.77540 0.76822 0.80074 1.21605 1.21516 1.20256 0.90874 0.93028 0.87057 0.84006 0.83745 0.91555 0.90332 0.90650 0.84119 0.84886 0.86444 0.74764 0.93651 0.88239 0.94692 0.89211 0.89451 0.94332 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.50 16 2 O -0.33 -8.52 9.63 -92.43 -0.89 -9.41 16 3 C 0.12 2.98 6.66 22.51 0.15 3.13 16 4 C -0.22 -4.71 9.04 22.37 0.20 -4.51 16 5 C -0.09 -1.75 9.69 22.25 0.22 -1.53 16 6 C -0.14 -2.70 5.88 -19.85 -0.12 -2.82 16 7 C -0.11 -1.44 10.01 71.23 0.71 -0.73 16 8 C -0.08 -1.80 9.33 22.26 0.21 -1.60 16 9 C -0.11 -2.81 4.39 -19.77 -0.09 -2.90 16 10 C -0.08 -1.77 5.55 29.10 0.16 -1.61 16 11 C 0.51 15.55 7.82 87.66 0.69 16.24 16 12 O -0.59 -24.12 15.76 -3.05 -0.05 -24.17 16 13 N -0.70 -19.62 3.63 -434.80 -1.58 -21.20 16 14 C 0.15 5.68 3.08 46.63 0.14 5.83 16 15 H 0.05 2.08 7.70 -2.39 -0.02 2.06 16 16 C -0.12 -4.64 6.20 32.21 0.20 -4.44 16 17 C 0.14 6.31 4.72 46.22 0.22 6.52 16 18 H 0.12 6.39 5.52 -2.39 -0.01 6.38 16 19 C -0.12 -4.64 6.44 32.21 0.21 -4.43 16 20 C -0.11 -4.13 6.32 32.21 0.20 -3.93 16 21 C 0.12 5.25 5.35 46.25 0.25 5.50 16 22 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 23 N -0.62 -32.43 2.99 -615.05 -1.84 -34.26 16 24 C -0.23 -13.19 10.59 84.03 0.89 -12.30 16 25 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 26 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 27 N -0.94 -55.50 10.47 21.65 0.23 -55.27 16 28 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 30 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 31 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 32 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 33 H 0.05 0.91 7.66 -2.39 -0.02 0.89 16 34 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.14 2.44 6.30 -2.91 -0.02 2.42 16 36 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.08 0.81 8.08 -2.39 -0.02 0.80 16 39 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 40 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.13 1.83 8.05 -2.38 -0.02 1.81 16 42 H 0.12 2.17 7.69 -2.39 -0.02 2.15 16 43 H 0.41 8.28 8.02 -92.71 -0.74 7.54 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.10 2.79 7.34 -2.38 -0.02 2.77 16 46 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.09 2.55 7.82 -2.39 -0.02 2.53 16 48 H 0.09 2.56 6.48 -2.39 -0.02 2.55 16 49 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 50 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -77.35 397.26 3.92 -73.42 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.21 Total: 27.02 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.82 Total: -5.21 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -3.19 Total: -110.73 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.94 Total: -33.58 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -77.35 3.92 -73.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095709479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.371 kcal (2) G-P(sol) polarization free energy of solvation -77.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds