Wall clock time and date at job start Wed Apr 1 2020 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99960 * 2 1 4 4 C 1.38234 * 119.99790 * 180.02562 * 3 2 1 5 5 C 1.38226 * 120.00311 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00196 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.46967 * 19.99697 * 6 5 4 8 8 C 1.52998 * 109.46846 * 259.99793 * 6 5 4 9 9 N 1.46501 * 109.47031 * 139.99740 * 6 5 4 10 10 C 1.34777 * 119.99564 * 204.99789 * 9 6 5 11 11 O 1.21347 * 120.00220 * 0.02562 * 10 9 6 12 12 C 1.49457 * 119.99505 * 180.02562 * 10 9 6 13 13 O 1.21342 * 120.00380 * 353.24171 * 12 10 9 14 14 N 1.34782 * 119.99484 * 173.23616 * 12 10 9 15 15 C 1.46923 * 120.62684 * 171.44241 * 14 12 10 16 16 C 1.53197 * 108.89116 * 126.46037 * 15 14 12 17 17 C 1.53040 * 109.31091 * 54.56637 * 16 15 14 18 18 C 1.50700 * 109.46331 * 178.62515 * 17 16 15 19 19 H 1.08000 * 119.99425 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00362 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99502 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46878 * 60.00231 * 22 20 18 24 24 H 1.48506 * 109.46910 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47244 * 300.00382 * 22 20 18 26 26 C 1.53045 * 109.53845 * 298.63723 * 17 16 15 27 27 C 1.46960 * 120.65505 * 351.26403 * 14 12 10 28 28 C 1.38237 * 120.00216 * 0.25074 * 5 4 3 29 29 C 1.38238 * 119.99896 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47289 * 90.00009 * 1 2 3 31 31 H 1.09004 * 109.47156 * 209.99764 * 1 2 3 32 32 H 1.08998 * 109.47235 * 330.00159 * 1 2 3 33 33 H 1.07997 * 119.99696 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99802 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.47259 * 299.99725 * 8 6 5 36 36 H 1.09001 * 109.47540 * 60.00214 * 8 6 5 37 37 H 1.09004 * 109.47190 * 179.97438 * 8 6 5 38 38 H 0.97003 * 119.99949 * 25.00263 * 9 6 5 39 39 H 1.09007 * 109.59032 * 6.60837 * 15 14 12 40 40 H 1.08996 * 109.59077 * 246.31988 * 15 14 12 41 41 H 1.08998 * 109.49713 * 174.51284 * 16 15 14 42 42 H 1.08994 * 109.49757 * 294.58305 * 16 15 14 43 43 H 1.09008 * 109.46079 * 58.65092 * 17 16 15 44 44 H 0.97005 * 119.99611 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.49836 * 181.31973 * 26 17 16 46 46 H 1.09010 * 109.49037 * 301.41123 * 26 17 16 47 47 H 1.08992 * 109.46848 * 113.75398 * 27 14 12 48 48 H 1.09003 * 109.71205 * 353.46093 * 27 14 12 49 49 H 1.08001 * 120.00688 * 179.72747 * 28 5 4 50 50 H 1.08001 * 120.00093 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1423 0.9656 0.3488 8 6 6.2875 -0.2499 -1.4239 9 7 6.2677 -1.0584 0.8843 10 6 7.4901 -0.9581 1.4429 11 8 8.1855 0.0091 1.2115 12 6 7.9892 -2.0382 2.3474 13 8 7.2509 -2.9430 2.6768 14 7 9.2595 -2.0071 2.7970 15 6 9.7114 -2.9500 3.8291 16 6 10.9624 -3.6759 3.3243 17 6 12.0146 -2.6439 2.9119 18 6 13.2594 -3.3544 2.4464 19 1 13.2962 -4.4337 2.4444 20 6 14.3508 -2.6265 2.0220 21 7 14.3056 -1.3122 2.0240 22 14 15.8940 -3.5073 1.4456 23 1 15.5657 -4.3720 0.2838 24 1 16.9146 -2.5060 1.0441 25 1 16.4281 -4.3439 2.5500 26 6 11.4655 -1.7796 1.7745 27 6 10.2202 -1.0323 2.2617 28 6 3.5806 -1.1971 -0.0074 29 6 2.1982 -1.1972 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6581 2.1324 -0.0004 34 1 4.1205 2.1324 -0.0010 35 1 5.9240 -1.2154 -1.7754 36 1 5.9237 0.5376 -2.0839 37 1 7.3776 -0.2494 -1.4248 38 1 5.7117 -1.8314 1.0694 39 1 8.9239 -3.6763 4.0307 40 1 9.9487 -2.4054 4.7430 41 1 11.3627 -4.3061 4.1185 42 1 10.7024 -4.2943 2.4652 43 1 12.2558 -2.0102 3.7654 44 1 15.0736 -0.8000 1.7257 45 1 12.2238 -1.0603 1.4655 46 1 11.2009 -2.4156 0.9296 47 1 10.4996 -0.3292 3.0463 48 1 9.7698 -0.4912 1.4295 49 1 4.1205 -2.1325 -0.0127 50 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116995486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:31 Heat of formation + Delta-G solvation = -44.522069 kcal Electronic energy + Delta-G solvation = -29899.568471 eV Core-core repulsion = 25891.528459 eV Total energy + Delta-G solvation = -4008.040012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.83633 -39.86631 -38.48187 -36.99561 -36.04776 -33.54603 -32.80511 -31.27885 -31.20883 -30.54940 -30.04449 -27.07972 -26.64142 -24.86064 -23.32640 -23.06948 -22.40907 -21.87647 -20.60465 -20.20633 -19.01243 -17.56590 -16.92944 -16.49497 -16.10831 -15.86307 -15.71276 -15.45888 -15.05551 -14.59135 -14.52537 -14.31723 -14.03457 -13.84518 -13.71233 -13.61876 -13.15316 -13.06317 -12.86053 -12.68797 -12.60288 -12.42370 -12.31351 -12.13858 -11.81078 -11.69983 -11.36704 -11.32613 -11.11961 -10.93960 -10.85662 -10.63247 -10.36660 -10.06777 -9.70418 -9.39026 -9.25223 -9.22511 -9.16799 -8.86612 -8.60040 -8.34030 -8.06818 -5.99764 -4.06373 0.93801 1.07748 1.62911 2.52415 3.31421 3.36306 3.37310 3.38954 3.44712 3.77661 4.24043 4.42914 4.46255 4.55914 4.57645 4.67757 4.87101 5.01941 5.09728 5.13400 5.21180 5.29669 5.34271 5.40154 5.46906 5.62691 5.65005 5.73695 5.74326 5.84961 5.90540 5.98398 6.05696 6.07859 6.10489 6.25704 6.25978 6.30452 6.45366 6.60787 6.65499 6.71225 6.79550 6.99093 7.12921 7.17013 7.31181 7.67170 7.77755 7.89705 7.95922 8.08163 8.26199 8.42774 8.96599 9.58366 11.05604 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024787 B = 0.002082 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.364718 B =13448.235276 C =13966.980687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.118 4.118 4 C -0.102 4.102 5 C -0.097 4.097 6 C 0.182 3.818 7 H 0.101 0.899 8 C -0.160 4.160 9 N -0.701 5.701 10 C 0.512 3.488 11 O -0.504 6.504 12 C 0.500 3.500 13 O -0.544 6.544 14 N -0.562 5.562 15 C 0.107 3.893 16 C -0.122 4.122 17 C 0.046 3.954 18 C -0.513 4.513 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.891 3.109 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.278 1.278 26 C -0.123 4.123 27 C 0.067 3.933 28 C -0.107 4.107 29 C -0.116 4.116 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.410 0.590 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.028 0.972 44 H 0.261 0.739 45 H 0.106 0.894 46 H 0.036 0.964 47 H 0.061 0.939 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.236 4.871 -5.046 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.120 4.120 5 C -0.097 4.097 6 C 0.078 3.922 7 H 0.119 0.881 8 C -0.218 4.218 9 N -0.355 5.355 10 C 0.294 3.706 11 O -0.380 6.380 12 C 0.282 3.718 13 O -0.424 6.424 14 N -0.293 5.293 15 C -0.015 4.015 16 C -0.160 4.160 17 C 0.028 3.972 18 C -0.552 4.552 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.529 5.529 22 Si 0.719 3.281 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.161 4.161 27 C -0.054 4.054 28 C -0.126 4.126 29 C -0.134 4.134 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.247 0.753 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.124 0.876 46 H 0.055 0.945 47 H 0.080 0.920 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.963 5.265 -5.067 26.010 hybrid contribution 0.765 -0.822 -0.225 1.146 sum -24.197 4.442 -5.292 25.165 Atomic orbital electron populations 1.20806 0.91164 1.02871 1.02355 1.19974 0.96162 0.93242 0.99340 1.21018 0.93977 0.97637 1.00980 1.20990 0.94207 0.97401 0.99433 1.19881 0.94434 0.93871 1.01538 1.19878 0.89179 0.92452 0.90683 0.88126 1.22185 1.02500 1.02452 0.94646 1.45966 1.17282 1.24756 1.47509 1.20399 0.82075 0.87390 0.80763 1.90557 1.53902 1.32555 1.60947 1.19876 0.83396 0.86041 0.82506 1.90690 1.56448 1.35658 1.59605 1.48223 1.08717 1.34488 1.37869 1.21884 0.98080 0.92103 0.89417 1.22006 0.94498 0.99203 1.00312 1.18678 0.91667 0.92468 0.94435 1.21151 0.97901 0.92864 1.43238 0.92782 1.24965 0.98522 0.94861 0.95641 1.69838 1.30514 1.04808 1.47723 0.86674 0.82906 0.79341 0.79153 1.20378 1.21314 1.20334 1.22031 0.94541 1.00449 0.99088 1.23079 0.90806 0.90685 1.00782 1.20963 0.94340 0.97571 0.99690 1.21025 0.93962 0.97701 1.00712 0.91128 0.91471 0.91516 0.85888 0.85622 0.92071 0.91176 0.91115 0.75258 0.90122 0.91510 0.91886 0.92841 0.95413 0.92904 0.87606 0.94538 0.92014 0.86093 0.85890 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.09 -0.66 5.88 -104.62 -0.62 -1.28 16 3 C -0.12 -0.90 9.70 -39.58 -0.38 -1.29 16 4 C -0.10 -0.85 9.67 -39.59 -0.38 -1.24 16 5 C -0.10 -0.89 4.95 -104.62 -0.52 -1.41 16 6 C 0.18 1.89 2.78 -69.08 -0.19 1.70 16 7 H 0.10 1.11 7.44 -51.93 -0.39 0.73 16 8 C -0.16 -1.55 9.46 37.16 0.35 -1.20 16 9 N -0.70 -8.62 5.02 -55.36 -0.28 -8.89 16 10 C 0.51 8.02 7.71 -11.58 -0.09 7.93 16 11 O -0.50 -8.69 12.85 5.50 0.07 -8.62 16 12 C 0.50 8.89 7.73 -11.58 -0.09 8.81 16 13 O -0.54 -10.17 15.93 5.50 0.09 -10.08 16 14 N -0.56 -10.60 2.98 -173.25 -0.52 -11.11 16 15 C 0.11 1.96 6.44 -3.71 -0.02 1.93 16 16 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 17 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 18 C -0.51 -13.85 8.56 -34.44 -0.29 -14.15 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 21 N -0.89 -24.88 11.30 55.43 0.63 -24.26 16 22 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C -0.12 -2.85 5.15 -26.61 -0.14 -2.99 16 27 C 0.07 1.33 5.97 -3.69 -0.02 1.31 16 28 C -0.11 -0.94 9.05 -39.58 -0.36 -1.30 16 29 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 32 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.87 8.04 -52.49 -0.42 0.45 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.41 4.67 6.38 -40.82 -0.26 4.41 16 39 H 0.08 1.41 7.01 -51.92 -0.36 1.05 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 44 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.11 2.73 6.03 -51.93 -0.31 2.42 16 46 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 48 H 0.12 2.37 4.34 -54.68 -0.24 2.14 16 49 H 0.12 0.98 6.93 -52.49 -0.36 0.61 16 50 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 400.29 15.07 6.03 6.03 Total: -1.00 -30.04 400.29 -10.00 -40.05 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.80 Total: 5.67 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -3.20 Total: -4.88 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.17 Total: -44.26 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.16 Total: -18.70 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.04 -10.00 -40.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116995486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.475 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds