Wall clock time and date at job start Wed Apr 1 2020 04:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99960 * 2 1 4 4 C 1.38234 * 119.99790 * 180.02562 * 3 2 1 5 5 C 1.38226 * 120.00311 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00196 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.46967 * 19.99697 * 6 5 4 8 8 C 1.52998 * 109.46846 * 259.99793 * 6 5 4 9 9 N 1.46501 * 109.47031 * 139.99740 * 6 5 4 10 10 C 1.34777 * 119.99564 * 204.99789 * 9 6 5 11 11 O 1.21347 * 120.00220 * 0.02562 * 10 9 6 12 12 C 1.49457 * 119.99505 * 180.02562 * 10 9 6 13 13 O 1.21342 * 120.00380 * 353.24171 * 12 10 9 14 14 N 1.34782 * 119.99484 * 173.23616 * 12 10 9 15 15 C 1.46923 * 120.62684 * 171.44241 * 14 12 10 16 16 C 1.53197 * 108.89116 * 126.46037 * 15 14 12 17 17 C 1.53040 * 109.31091 * 54.56637 * 16 15 14 18 18 C 1.50700 * 109.46331 * 178.62515 * 17 16 15 19 19 H 1.08000 * 119.99425 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00362 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99502 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46878 * 60.00231 * 22 20 18 24 24 H 1.48506 * 109.46910 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47244 * 300.00382 * 22 20 18 26 26 C 1.53045 * 109.53845 * 298.63723 * 17 16 15 27 27 C 1.46960 * 120.65505 * 351.26403 * 14 12 10 28 28 C 1.38237 * 120.00216 * 0.25074 * 5 4 3 29 29 C 1.38238 * 119.99896 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47289 * 90.00009 * 1 2 3 31 31 H 1.09004 * 109.47156 * 209.99764 * 1 2 3 32 32 H 1.08998 * 109.47235 * 330.00159 * 1 2 3 33 33 H 1.07997 * 119.99696 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99802 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.47259 * 299.99725 * 8 6 5 36 36 H 1.09001 * 109.47540 * 60.00214 * 8 6 5 37 37 H 1.09004 * 109.47190 * 179.97438 * 8 6 5 38 38 H 0.97003 * 119.99949 * 25.00263 * 9 6 5 39 39 H 1.09007 * 109.59032 * 6.60837 * 15 14 12 40 40 H 1.08996 * 109.59077 * 246.31988 * 15 14 12 41 41 H 1.08998 * 109.49713 * 174.51284 * 16 15 14 42 42 H 1.08994 * 109.49757 * 294.58305 * 16 15 14 43 43 H 1.09008 * 109.46079 * 58.65092 * 17 16 15 44 44 H 0.97005 * 119.99611 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.49836 * 181.31973 * 26 17 16 46 46 H 1.09010 * 109.49037 * 301.41123 * 26 17 16 47 47 H 1.08992 * 109.46848 * 113.75398 * 27 14 12 48 48 H 1.09003 * 109.71205 * 353.46093 * 27 14 12 49 49 H 1.08001 * 120.00688 * 179.72747 * 28 5 4 50 50 H 1.08001 * 120.00093 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1423 0.9656 0.3488 8 6 6.2875 -0.2499 -1.4239 9 7 6.2677 -1.0584 0.8843 10 6 7.4901 -0.9581 1.4429 11 8 8.1855 0.0091 1.2115 12 6 7.9892 -2.0382 2.3474 13 8 7.2509 -2.9430 2.6768 14 7 9.2595 -2.0071 2.7970 15 6 9.7114 -2.9500 3.8291 16 6 10.9624 -3.6759 3.3243 17 6 12.0146 -2.6439 2.9119 18 6 13.2594 -3.3544 2.4464 19 1 13.2962 -4.4337 2.4444 20 6 14.3508 -2.6265 2.0220 21 7 14.3056 -1.3122 2.0240 22 14 15.8940 -3.5073 1.4456 23 1 15.5657 -4.3720 0.2838 24 1 16.9146 -2.5060 1.0441 25 1 16.4281 -4.3439 2.5500 26 6 11.4655 -1.7796 1.7745 27 6 10.2202 -1.0323 2.2617 28 6 3.5806 -1.1971 -0.0074 29 6 2.1982 -1.1972 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6581 2.1324 -0.0004 34 1 4.1205 2.1324 -0.0010 35 1 5.9240 -1.2154 -1.7754 36 1 5.9237 0.5376 -2.0839 37 1 7.3776 -0.2494 -1.4248 38 1 5.7117 -1.8314 1.0694 39 1 8.9239 -3.6763 4.0307 40 1 9.9487 -2.4054 4.7430 41 1 11.3627 -4.3061 4.1185 42 1 10.7024 -4.2943 2.4652 43 1 12.2558 -2.0102 3.7654 44 1 15.0736 -0.8000 1.7257 45 1 12.2238 -1.0603 1.4655 46 1 11.2009 -2.4156 0.9296 47 1 10.4996 -0.3292 3.0463 48 1 9.7698 -0.4912 1.4295 49 1 4.1205 -2.1325 -0.0127 50 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116995486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:29 Heat of formation + Delta-G solvation = -60.332779 kcal Electronic energy + Delta-G solvation = -29900.254075 eV Core-core repulsion = 25891.528459 eV Total energy + Delta-G solvation = -4008.725616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.10307 -40.71003 -39.71850 -38.59050 -37.04517 -35.34188 -33.64493 -33.02639 -31.86772 -31.76725 -31.34712 -28.40076 -27.65471 -26.34319 -24.45667 -24.05343 -23.91872 -23.02759 -21.66151 -21.30260 -20.56336 -18.92416 -18.39946 -18.11826 -17.31876 -17.07535 -16.87521 -16.49584 -16.09326 -16.02088 -15.58832 -15.41636 -15.24362 -14.80535 -14.76381 -14.64396 -14.44426 -14.33692 -14.29448 -14.00487 -13.85096 -13.47204 -13.22609 -13.07640 -13.00761 -12.80170 -12.72508 -12.54051 -12.51367 -12.34700 -12.15247 -11.97046 -11.92800 -11.78161 -11.51390 -11.05523 -11.00972 -10.46961 -10.44668 -10.11275 -9.84972 -9.69845 -9.46307 -8.07098 -6.21091 0.26598 0.32769 0.47690 1.28451 1.42816 1.43324 1.50983 2.06175 2.43622 2.44804 2.80793 3.19223 3.24557 3.51272 3.87112 4.07129 4.08408 4.10448 4.19828 4.23145 4.26814 4.30220 4.49317 4.52216 4.54347 4.55071 4.59555 4.76630 4.81512 4.84102 4.85807 4.88432 4.93497 4.96605 5.13669 5.15416 5.18599 5.19762 5.27472 5.28502 5.37683 5.44595 5.48040 5.62400 5.63737 5.70080 5.95184 5.98686 6.08525 6.10179 6.26055 6.38269 6.64143 6.87632 6.89589 7.46589 8.96332 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024787 B = 0.002082 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.364718 B =13448.235276 C =13966.980687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.124 4.124 4 C -0.110 4.110 5 C -0.109 4.109 6 C 0.184 3.816 7 H 0.094 0.906 8 C -0.155 4.155 9 N -0.683 5.683 10 C 0.513 3.487 11 O -0.523 6.523 12 C 0.501 3.499 13 O -0.551 6.551 14 N -0.570 5.570 15 C 0.111 3.889 16 C -0.113 4.113 17 C 0.043 3.957 18 C -0.535 4.535 19 H 0.051 0.949 20 C 0.014 3.986 21 N -0.913 5.913 22 Si 0.952 3.048 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.113 4.113 27 C 0.083 3.917 28 C -0.117 4.117 29 C -0.125 4.125 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.416 0.584 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.004 0.996 44 H 0.261 0.739 45 H 0.077 0.923 46 H 0.024 0.976 47 H 0.059 0.941 48 H 0.129 0.871 49 H 0.127 0.873 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.246 4.669 -5.401 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.128 4.128 5 C -0.109 4.109 6 C 0.080 3.920 7 H 0.112 0.888 8 C -0.213 4.213 9 N -0.337 5.337 10 C 0.295 3.705 11 O -0.401 6.401 12 C 0.283 3.717 13 O -0.430 6.430 14 N -0.302 5.302 15 C -0.010 4.010 16 C -0.151 4.151 17 C 0.024 3.976 18 C -0.573 4.573 19 H 0.069 0.931 20 C -0.185 4.185 21 N -0.553 5.553 22 Si 0.778 3.222 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.151 4.151 27 C -0.038 4.038 28 C -0.136 4.136 29 C -0.143 4.143 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.254 0.746 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.022 0.978 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.043 0.957 47 H 0.078 0.922 48 H 0.146 0.854 49 H 0.145 0.855 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -27.020 5.043 -5.428 28.017 hybrid contribution 1.280 -0.765 -0.126 1.497 sum -25.740 4.278 -5.554 26.677 Atomic orbital electron populations 1.20852 0.89508 1.03628 1.03129 1.20323 0.97517 0.93073 0.98267 1.21299 0.93814 0.98622 1.00492 1.21191 0.94804 0.97543 0.99249 1.19781 0.93390 0.94594 1.03146 1.19974 0.90245 0.91314 0.90419 0.88762 1.22146 1.01142 1.03480 0.94560 1.45967 1.15951 1.25232 1.46503 1.20045 0.82978 0.86604 0.80893 1.90536 1.54691 1.33032 1.61824 1.20217 0.82848 0.86302 0.82291 1.90680 1.56452 1.36090 1.59806 1.48204 1.09106 1.34523 1.38326 1.21854 0.97235 0.92323 0.89611 1.21849 0.94574 0.98336 1.00314 1.18652 0.92204 0.93015 0.93724 1.21519 0.99313 0.92963 1.43487 0.93090 1.25700 1.01376 0.95561 0.95823 1.69970 1.31163 1.05909 1.48219 0.85715 0.79457 0.78314 0.78757 1.20015 1.20975 1.19709 1.21802 0.95330 0.99605 0.98384 1.22811 0.89668 0.90293 1.00987 1.21090 0.94939 0.97561 0.99979 1.21273 0.93794 0.98695 1.00566 0.90246 0.90871 0.90667 0.84026 0.84607 0.91494 0.89469 0.93070 0.74565 0.88765 0.90287 0.90933 0.93661 0.97822 0.92965 0.90426 0.95704 0.92225 0.85396 0.85542 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 71.24 0.71 -0.21 16 2 C -0.09 -1.20 5.88 -19.86 -0.12 -1.32 16 3 C -0.12 -1.65 9.70 22.27 0.22 -1.43 16 4 C -0.11 -1.66 9.67 22.27 0.22 -1.45 16 5 C -0.11 -1.87 4.95 -19.87 -0.10 -1.96 16 6 C 0.18 3.65 2.78 44.25 0.12 3.78 16 7 H 0.09 2.03 7.44 -2.39 -0.02 2.01 16 8 C -0.16 -2.89 9.46 71.98 0.68 -2.20 16 9 N -0.68 -16.17 5.02 -447.43 -2.25 -18.42 16 10 C 0.51 15.78 7.71 87.27 0.67 16.45 16 11 O -0.52 -17.92 12.85 -3.24 -0.04 -17.96 16 12 C 0.50 17.37 7.73 87.27 0.67 18.04 16 13 O -0.55 -19.78 15.93 -3.22 -0.05 -19.83 16 14 N -0.57 -21.23 2.98 -820.39 -2.44 -23.67 16 15 C 0.11 3.97 6.44 86.36 0.56 4.53 16 16 C -0.11 -4.62 5.30 30.67 0.16 -4.46 16 17 C 0.04 2.11 2.06 -11.51 -0.02 2.09 16 18 C -0.53 -29.30 8.56 25.60 0.22 -29.08 16 19 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 20 C 0.01 0.79 5.30 84.65 0.45 1.23 16 21 N -0.91 -52.10 11.30 21.45 0.24 -51.85 16 22 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C -0.11 -5.37 5.15 30.67 0.16 -5.21 16 27 C 0.08 3.36 5.97 86.36 0.52 3.88 16 28 C -0.12 -1.89 9.05 22.27 0.20 -1.69 16 29 C -0.13 -1.78 9.70 22.27 0.22 -1.56 16 30 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.07 0.51 8.09 -2.38 -0.02 0.49 16 32 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 33 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.14 1.69 8.04 -2.91 -0.02 1.66 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.42 8.97 6.38 -92.71 -0.59 8.38 16 39 H 0.09 3.14 7.01 -2.38 -0.02 3.12 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 44 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 45 H 0.08 4.16 6.03 -2.39 -0.01 4.15 16 46 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.13 5.07 4.34 -46.00 -0.20 4.87 16 49 H 0.13 1.85 6.93 -2.91 -0.02 1.83 16 50 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -64.08 400.29 3.19 -60.89 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.16 Total: 25.86 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.53 Total: -0.59 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -4.45 Total: -93.94 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.09 Total: -37.80 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -64.08 3.19 -60.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116995486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.558 kcal (2) G-P(sol) polarization free energy of solvation -64.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds