Wall clock time and date at job start Wed Apr 1 2020 04:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 120.00021 * 2 1 4 4 C 1.38210 * 120.00134 * 180.29301 * 3 2 1 5 5 C 1.38259 * 120.00089 * 359.70911 * 4 3 2 6 6 C 1.38211 * 119.99566 * 0.02562 * 5 4 3 7 7 C 1.38208 * 120.00085 * 179.74598 * 2 1 3 8 8 C 1.50697 * 120.00232 * 0.02562 * 7 2 1 9 9 H 1.09001 * 115.55677 * 334.03697 * 8 7 2 10 10 C 1.53072 * 117.49665 * 188.32983 * 8 7 2 11 11 C 1.52999 * 117.50054 * 119.72454 * 8 7 2 12 12 H 1.08995 * 117.49751 * 359.97405 * 11 8 7 13 13 N 1.46505 * 117.49761 * 214.97880 * 11 8 7 14 14 C 1.34777 * 120.00115 * 155.08700 * 13 11 8 15 15 O 1.21347 * 119.99781 * 359.97438 * 14 13 11 16 16 C 1.49444 * 120.00018 * 180.02562 * 14 13 11 17 17 O 1.21352 * 120.00228 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00018 * 179.97438 * 16 14 13 19 19 C 1.46500 * 120.00376 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.47473 * 180.02562 * 19 18 16 21 21 C 1.53006 * 109.47127 * 59.99627 * 20 19 18 22 22 C 1.52999 * 109.46991 * 300.00312 * 20 19 18 23 23 C 1.50697 * 109.47466 * 179.97438 * 20 19 18 24 24 H 1.08002 * 119.99362 * 359.97438 * 23 20 19 25 25 C 1.37867 * 120.00258 * 180.02562 * 23 20 19 26 26 N 1.31511 * 120.00203 * 359.97438 * 25 23 20 27 27 Si 1.86805 * 120.00057 * 179.97438 * 25 23 20 28 28 H 1.48496 * 109.47191 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.46922 * 120.00214 * 27 25 23 30 30 H 1.48498 * 109.46996 * 239.99688 * 27 25 23 31 31 H 1.09004 * 109.47236 * 270.25550 * 1 2 3 32 32 H 1.09007 * 109.47283 * 30.24982 * 1 2 3 33 33 H 1.09001 * 109.47067 * 150.25325 * 1 2 3 34 34 H 1.08002 * 120.00083 * 0.02562 * 3 2 1 35 35 H 1.08007 * 120.00193 * 179.72344 * 4 3 2 36 36 H 1.07991 * 120.00071 * 179.97438 * 5 4 3 37 37 H 1.08004 * 120.00233 * 179.97438 * 6 5 4 38 38 H 1.08993 * 117.51524 * 145.03292 * 10 8 7 39 39 H 1.09004 * 117.51168 * 359.97438 * 10 8 7 40 40 H 0.96996 * 119.99606 * 335.09115 * 13 11 8 41 41 H 0.97003 * 119.99640 * 359.97438 * 18 16 14 42 42 H 1.09002 * 109.47129 * 59.99747 * 19 18 16 43 43 H 1.09001 * 109.46596 * 300.00102 * 19 18 16 44 44 H 1.09001 * 109.46801 * 300.00272 * 21 20 19 45 45 H 1.09001 * 109.46998 * 59.99868 * 21 20 19 46 46 H 1.09000 * 109.47050 * 180.02562 * 21 20 19 47 47 H 1.09000 * 109.47160 * 179.97438 * 22 20 19 48 48 H 1.09002 * 109.46719 * 299.99711 * 22 20 19 49 49 H 1.08993 * 109.47839 * 59.99553 * 22 20 19 50 50 H 0.97006 * 120.00645 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0061 5 6 4.2717 0.0001 -0.0062 6 6 3.5806 -1.1968 -0.0006 7 6 2.1980 -1.1969 0.0053 8 6 1.4446 -2.5020 0.0105 9 1 0.4436 -2.4654 0.4405 10 6 2.2547 -3.7849 0.2129 11 6 1.6746 -3.4552 -1.1639 12 1 2.3705 -3.1382 -1.9406 13 7 0.5326 -4.2490 -1.6245 14 6 0.4943 -4.7013 -2.8935 15 8 1.4054 -4.4506 -3.6548 16 6 -0.6709 -5.5106 -3.3635 17 8 -1.5827 -5.7601 -2.6026 18 7 -0.7095 -5.9624 -4.6327 19 6 -1.8514 -6.7562 -5.0933 20 6 -1.6472 -7.1402 -6.5601 21 6 -0.3649 -7.9635 -6.6981 22 6 -1.5325 -5.8719 -7.4081 23 6 -2.8215 -7.9573 -7.0337 24 1 -3.6322 -8.1807 -6.3561 25 6 -2.8604 -8.4204 -8.3317 26 7 -1.8730 -8.1488 -9.1567 27 14 -4.3158 -9.4339 -8.9185 28 1 -5.2853 -9.5984 -7.8058 29 1 -4.9767 -8.7402 -10.0531 30 1 -3.8420 -10.7692 -9.3631 31 1 -0.3634 0.0046 1.0277 32 1 -0.3634 0.8878 -0.5177 33 1 -0.3633 -0.8923 -0.5099 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1328 -0.0106 36 1 5.3516 0.0001 -0.0114 37 1 4.1206 -2.1322 -0.0011 38 1 1.7868 -4.5923 0.7760 39 1 3.3325 -3.6848 0.3419 40 1 -0.1958 -4.4491 -1.0161 41 1 0.0189 -5.7620 -5.2412 42 1 -2.7650 -6.1699 -4.9946 43 1 -1.9327 -7.6600 -4.4894 44 1 0.4847 -7.3728 -6.3554 45 1 -0.4465 -8.8670 -6.0939 46 1 -0.2191 -8.2367 -7.7432 47 1 -1.3865 -6.1454 -8.4531 48 1 -2.4460 -5.2854 -7.3098 49 1 -0.6829 -5.2812 -7.0655 50 1 -1.9005 -8.4743 -10.0701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118297642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:51 Heat of formation + Delta-G solvation = -29.864862 kcal Electronic energy + Delta-G solvation = -29121.671148 eV Core-core repulsion = 25114.266720 eV Total energy + Delta-G solvation = -4007.404428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.68940 -40.01641 -38.51801 -37.25406 -36.49235 -33.79372 -33.20791 -32.96274 -30.90843 -30.56651 -27.21833 -26.49238 -25.73414 -25.34086 -24.38371 -23.95764 -21.77650 -21.72633 -20.72136 -20.16794 -19.02812 -18.25123 -17.32258 -16.63194 -16.22929 -15.75977 -15.68700 -15.32887 -15.21558 -14.88704 -14.58767 -14.43507 -14.15412 -14.01213 -13.62241 -13.39111 -13.06878 -12.94946 -12.77494 -12.59228 -12.48273 -12.27481 -12.23418 -11.73507 -11.51213 -11.47792 -11.41591 -11.22524 -11.19228 -10.90612 -10.85038 -10.68406 -10.41567 -10.21314 -9.66778 -9.59083 -9.38189 -9.26073 -9.04672 -8.80861 -8.65821 -8.61337 -8.38820 -6.03800 -4.14589 0.96941 1.07744 1.57725 2.42958 3.18715 3.26149 3.34914 3.38820 3.43640 3.72154 3.84755 4.26215 4.37817 4.38630 4.44794 4.56331 4.62353 4.71904 4.73738 4.84591 4.99147 5.22471 5.22903 5.30037 5.32745 5.34297 5.50993 5.55045 5.65930 5.74364 5.86015 6.08964 6.11082 6.19545 6.21489 6.21522 6.34067 6.45271 6.60014 6.69375 6.80121 6.83861 6.92183 6.99008 7.03545 7.31886 7.53874 7.63263 7.68852 7.92009 7.98852 8.10993 8.29242 8.38740 8.85839 9.51418 10.97619 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.001800 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.246990 B =15548.171661 C =15581.729192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.076 4.076 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.115 4.115 7 C -0.051 4.051 8 C -0.123 4.123 9 H 0.120 0.880 10 C -0.181 4.181 11 C 0.095 3.905 12 H 0.143 0.857 13 N -0.679 5.679 14 C 0.513 3.487 15 O -0.516 6.516 16 C 0.497 3.503 17 O -0.535 6.535 18 N -0.679 5.679 19 C 0.128 3.872 20 C 0.055 3.945 21 C -0.134 4.134 22 C -0.134 4.134 23 C -0.506 4.506 24 H 0.059 0.941 25 C 0.066 3.934 26 N -0.884 5.884 27 Si 0.894 3.106 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.284 1.284 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.414 0.586 41 H 0.411 0.589 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.008 0.992 45 H 0.028 0.972 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.028 0.972 49 H 0.008 0.992 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.388 15.705 19.649 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.133 4.133 7 C -0.052 4.052 8 C -0.143 4.143 9 H 0.138 0.862 10 C -0.220 4.220 11 C -0.011 4.011 12 H 0.160 0.840 13 N -0.331 5.331 14 C 0.295 3.705 15 O -0.390 6.390 16 C 0.276 3.724 17 O -0.413 6.413 18 N -0.330 5.330 19 C 0.006 3.994 20 C 0.054 3.946 21 C -0.191 4.191 22 C -0.191 4.191 23 C -0.545 4.545 24 H 0.077 0.923 25 C -0.136 4.136 26 N -0.522 5.522 27 Si 0.722 3.278 28 H -0.198 1.198 29 H -0.211 1.211 30 H -0.211 1.211 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.251 0.749 41 H 0.249 0.751 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.027 0.973 45 H 0.047 0.953 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.047 0.953 49 H 0.027 0.973 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.414 15.630 19.374 26.983 hybrid contribution -0.706 -0.477 -0.276 0.896 sum 9.709 15.152 19.098 26.241 Atomic orbital electron populations 1.20860 0.91123 1.03264 1.02367 1.19735 0.96159 0.92389 0.99307 1.21031 0.94309 0.97401 1.00991 1.21146 0.94317 0.98113 1.00250 1.21106 0.99894 0.92413 1.00672 1.21068 0.93530 0.98447 1.00284 1.18891 0.93020 0.92463 1.00786 1.21604 1.00601 0.88805 1.03268 0.86181 1.23691 1.00796 0.97975 0.99497 1.21826 0.91425 0.96064 0.91751 0.83986 1.45125 1.22895 1.52648 1.12446 1.20512 0.87418 0.80305 0.82314 1.90756 1.37811 1.56313 1.54114 1.19876 0.86683 0.81814 0.84023 1.90729 1.37883 1.58179 1.54549 1.46229 1.25075 1.51071 1.10639 1.21961 0.85897 0.93335 0.98202 1.18397 0.95438 0.93590 0.87152 1.21859 0.95359 0.97934 1.03976 1.21856 0.96789 0.96168 1.04325 1.20976 1.04334 1.32588 0.96563 0.92289 1.24889 0.96085 0.95964 0.96638 1.69816 1.31047 1.45587 1.05777 0.86498 0.82647 0.79898 0.78724 1.19760 1.21059 1.21062 0.91072 0.91423 0.91039 0.86033 0.86125 0.86034 0.85750 0.87597 0.87296 0.74944 0.75136 0.91936 0.91939 0.97271 0.95332 0.89418 0.89421 0.95328 0.97265 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.33 36.00 0.34 -0.53 16 2 C -0.08 -0.66 5.88 -104.63 -0.62 -1.27 16 3 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 4 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 5 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 6 C -0.12 -0.95 9.30 -39.58 -0.37 -1.32 16 7 C -0.05 -0.45 5.61 -104.63 -0.59 -1.04 16 8 C -0.12 -0.99 5.07 -91.74 -0.46 -1.46 16 9 H 0.12 0.87 6.92 -51.93 -0.36 0.51 16 10 C -0.18 -1.34 9.79 -26.69 -0.26 -1.60 16 11 C 0.10 0.94 6.06 -67.93 -0.41 0.53 16 12 H 0.14 1.61 7.40 -51.93 -0.38 1.23 16 13 N -0.68 -7.86 5.56 -54.24 -0.30 -8.16 16 14 C 0.51 7.76 7.89 -11.59 -0.09 7.67 16 15 O -0.52 -8.84 16.04 5.50 0.09 -8.75 16 16 C 0.50 8.58 7.89 -11.59 -0.09 8.49 16 17 O -0.53 -10.03 16.48 5.49 0.09 -9.94 16 18 N -0.68 -12.48 4.95 -60.73 -0.30 -12.78 16 19 C 0.13 2.65 4.50 -4.04 -0.02 2.63 16 20 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 21 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 22 C -0.13 -3.05 8.08 37.16 0.30 -2.74 16 23 C -0.51 -13.04 8.01 -34.45 -0.28 -13.32 16 24 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 25 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 26 N -0.88 -23.49 9.35 55.43 0.52 -22.97 16 27 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.44 8.09 -51.92 -0.42 0.02 16 33 H 0.07 0.55 6.65 -51.93 -0.35 0.20 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.12 0.84 6.02 -52.48 -0.32 0.52 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.11 0.68 6.18 -51.93 -0.32 0.36 16 40 H 0.41 4.22 8.30 -40.82 -0.34 3.88 16 41 H 0.41 7.47 5.63 -40.82 -0.23 7.24 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 47 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 50 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 404.31 15.07 6.09 6.09 Total: -1.00 -28.99 404.31 -9.84 -38.82 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.40 Total: 10.06 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -3.60 Total: -7.87 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.08 Total: -43.92 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.69 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.99 -9.84 -38.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118297642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.958 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds