Wall clock time and date at job start Wed Apr 1 2020 04:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 120.00021 * 2 1 4 4 C 1.38210 * 120.00134 * 180.29301 * 3 2 1 5 5 C 1.38259 * 120.00089 * 359.70911 * 4 3 2 6 6 C 1.38211 * 119.99566 * 0.02562 * 5 4 3 7 7 C 1.38208 * 120.00085 * 179.74598 * 2 1 3 8 8 C 1.50697 * 120.00232 * 0.02562 * 7 2 1 9 9 H 1.09001 * 115.55677 * 334.03697 * 8 7 2 10 10 C 1.53072 * 117.49665 * 188.32983 * 8 7 2 11 11 C 1.52999 * 117.50054 * 119.72454 * 8 7 2 12 12 H 1.08995 * 117.49751 * 359.97405 * 11 8 7 13 13 N 1.46505 * 117.49761 * 214.97880 * 11 8 7 14 14 C 1.34777 * 120.00115 * 155.08700 * 13 11 8 15 15 O 1.21347 * 119.99781 * 359.97438 * 14 13 11 16 16 C 1.49444 * 120.00018 * 180.02562 * 14 13 11 17 17 O 1.21352 * 120.00228 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00018 * 179.97438 * 16 14 13 19 19 C 1.46500 * 120.00376 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.47473 * 180.02562 * 19 18 16 21 21 C 1.53006 * 109.47127 * 59.99627 * 20 19 18 22 22 C 1.52999 * 109.46991 * 300.00312 * 20 19 18 23 23 C 1.50697 * 109.47466 * 179.97438 * 20 19 18 24 24 H 1.08002 * 119.99362 * 359.97438 * 23 20 19 25 25 C 1.37867 * 120.00258 * 180.02562 * 23 20 19 26 26 N 1.31511 * 120.00203 * 359.97438 * 25 23 20 27 27 Si 1.86805 * 120.00057 * 179.97438 * 25 23 20 28 28 H 1.48496 * 109.47191 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.46922 * 120.00214 * 27 25 23 30 30 H 1.48498 * 109.46996 * 239.99688 * 27 25 23 31 31 H 1.09004 * 109.47236 * 270.25550 * 1 2 3 32 32 H 1.09007 * 109.47283 * 30.24982 * 1 2 3 33 33 H 1.09001 * 109.47067 * 150.25325 * 1 2 3 34 34 H 1.08002 * 120.00083 * 0.02562 * 3 2 1 35 35 H 1.08007 * 120.00193 * 179.72344 * 4 3 2 36 36 H 1.07991 * 120.00071 * 179.97438 * 5 4 3 37 37 H 1.08004 * 120.00233 * 179.97438 * 6 5 4 38 38 H 1.08993 * 117.51524 * 145.03292 * 10 8 7 39 39 H 1.09004 * 117.51168 * 359.97438 * 10 8 7 40 40 H 0.96996 * 119.99606 * 335.09115 * 13 11 8 41 41 H 0.97003 * 119.99640 * 359.97438 * 18 16 14 42 42 H 1.09002 * 109.47129 * 59.99747 * 19 18 16 43 43 H 1.09001 * 109.46596 * 300.00102 * 19 18 16 44 44 H 1.09001 * 109.46801 * 300.00272 * 21 20 19 45 45 H 1.09001 * 109.46998 * 59.99868 * 21 20 19 46 46 H 1.09000 * 109.47050 * 180.02562 * 21 20 19 47 47 H 1.09000 * 109.47160 * 179.97438 * 22 20 19 48 48 H 1.09002 * 109.46719 * 299.99711 * 22 20 19 49 49 H 1.08993 * 109.47839 * 59.99553 * 22 20 19 50 50 H 0.97006 * 120.00645 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0061 5 6 4.2717 0.0001 -0.0062 6 6 3.5806 -1.1968 -0.0006 7 6 2.1980 -1.1969 0.0053 8 6 1.4446 -2.5020 0.0105 9 1 0.4436 -2.4654 0.4405 10 6 2.2547 -3.7849 0.2129 11 6 1.6746 -3.4552 -1.1639 12 1 2.3705 -3.1382 -1.9406 13 7 0.5326 -4.2490 -1.6245 14 6 0.4943 -4.7013 -2.8935 15 8 1.4054 -4.4506 -3.6548 16 6 -0.6709 -5.5106 -3.3635 17 8 -1.5827 -5.7601 -2.6026 18 7 -0.7095 -5.9624 -4.6327 19 6 -1.8514 -6.7562 -5.0933 20 6 -1.6472 -7.1402 -6.5601 21 6 -0.3649 -7.9635 -6.6981 22 6 -1.5325 -5.8719 -7.4081 23 6 -2.8215 -7.9573 -7.0337 24 1 -3.6322 -8.1807 -6.3561 25 6 -2.8604 -8.4204 -8.3317 26 7 -1.8730 -8.1488 -9.1567 27 14 -4.3158 -9.4339 -8.9185 28 1 -5.2853 -9.5984 -7.8058 29 1 -4.9767 -8.7402 -10.0531 30 1 -3.8420 -10.7692 -9.3631 31 1 -0.3634 0.0046 1.0277 32 1 -0.3634 0.8878 -0.5177 33 1 -0.3633 -0.8923 -0.5099 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1328 -0.0106 36 1 5.3516 0.0001 -0.0114 37 1 4.1206 -2.1322 -0.0011 38 1 1.7868 -4.5923 0.7760 39 1 3.3325 -3.6848 0.3419 40 1 -0.1958 -4.4491 -1.0161 41 1 0.0189 -5.7620 -5.2412 42 1 -2.7650 -6.1699 -4.9946 43 1 -1.9327 -7.6600 -4.4894 44 1 0.4847 -7.3728 -6.3554 45 1 -0.4465 -8.8670 -6.0939 46 1 -0.2191 -8.2367 -7.7432 47 1 -1.3865 -6.1454 -8.4531 48 1 -2.4460 -5.2854 -7.3098 49 1 -0.6829 -5.2812 -7.0655 50 1 -1.9005 -8.4743 -10.0701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118297642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:50 Heat of formation + Delta-G solvation = -45.513496 kcal Electronic energy + Delta-G solvation = -29122.349723 eV Core-core repulsion = 25114.266720 eV Total energy + Delta-G solvation = -4008.083004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.81864 -40.82069 -39.74861 -38.21061 -38.08925 -35.24406 -34.27662 -33.67152 -32.75033 -31.20334 -28.07752 -27.72921 -27.59072 -27.24194 -25.40585 -24.89394 -22.72693 -22.32305 -21.67642 -21.11136 -20.70972 -19.62986 -18.27944 -17.83662 -17.41892 -17.07691 -17.00626 -16.61976 -16.28950 -15.96518 -15.71651 -15.51658 -15.11558 -15.00213 -14.77470 -14.66985 -14.37459 -14.05721 -13.95610 -13.78592 -13.22660 -13.15825 -13.14206 -13.04162 -12.92578 -12.76683 -12.71475 -12.55968 -12.51514 -12.28437 -12.12040 -12.07539 -11.79160 -11.51177 -11.47331 -11.30776 -10.79022 -10.66191 -10.41711 -10.21342 -10.12340 -9.64352 -9.29847 -8.01514 -6.17889 0.24670 0.41519 0.49541 1.26435 1.43198 1.47614 1.56752 2.06927 2.44466 2.61073 2.66963 3.09927 3.22398 3.39831 3.60766 3.70167 3.83850 3.97814 4.05279 4.19047 4.25129 4.33884 4.45065 4.46989 4.60943 4.67352 4.67499 4.76819 4.80677 4.84805 4.92077 4.98452 5.03603 5.05118 5.09283 5.16886 5.17691 5.20288 5.22935 5.31505 5.47676 5.60905 5.64389 5.64457 5.67893 5.74435 5.90648 6.10870 6.13704 6.18671 6.35967 6.41142 6.70263 6.86126 6.93545 7.50105 8.97900 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.001800 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.246990 B =15548.171661 C =15581.729192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.127 4.127 5 C -0.133 4.133 6 C -0.125 4.125 7 C -0.069 4.069 8 C -0.110 4.110 9 H 0.130 0.870 10 C -0.161 4.161 11 C 0.071 3.929 12 H 0.126 0.874 13 N -0.660 5.660 14 C 0.518 3.482 15 O -0.540 6.540 16 C 0.500 3.500 17 O -0.549 6.549 18 N -0.681 5.681 19 C 0.143 3.857 20 C 0.049 3.951 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.523 4.523 24 H 0.052 0.948 25 C 0.025 3.975 26 N -0.901 5.901 27 Si 0.949 3.051 28 H -0.271 1.271 29 H -0.284 1.284 30 H -0.283 1.283 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.422 0.578 41 H 0.413 0.587 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.029 0.971 45 H 0.024 0.976 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.024 0.976 49 H 0.029 0.971 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.917 16.466 21.354 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.143 4.143 7 C -0.069 4.069 8 C -0.130 4.130 9 H 0.147 0.853 10 C -0.199 4.199 11 C -0.034 4.034 12 H 0.144 0.856 13 N -0.311 5.311 14 C 0.299 3.701 15 O -0.417 6.417 16 C 0.280 3.720 17 O -0.428 6.428 18 N -0.332 5.332 19 C 0.020 3.980 20 C 0.048 3.952 21 C -0.182 4.182 22 C -0.182 4.182 23 C -0.562 4.562 24 H 0.070 0.930 25 C -0.175 4.175 26 N -0.540 5.540 27 Si 0.776 3.224 28 H -0.196 1.196 29 H -0.210 1.210 30 H -0.209 1.209 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.260 0.740 41 H 0.251 0.749 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.043 0.957 49 H 0.048 0.952 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.947 16.409 21.127 28.904 hybrid contribution -0.827 -0.631 -0.725 1.268 sum 10.120 15.777 20.402 27.706 Atomic orbital electron populations 1.20868 0.90439 1.03150 1.03025 1.20000 0.96930 0.92733 0.99493 1.21300 0.94807 0.97878 1.00963 1.21460 0.94432 0.99012 0.99565 1.21408 1.00970 0.92356 1.00353 1.21306 0.93574 0.99287 1.00146 1.19060 0.93485 0.92754 1.01629 1.21608 1.01217 0.88786 1.01340 0.85260 1.23805 1.01693 0.97757 0.96673 1.21899 0.91185 0.97845 0.92510 0.85601 1.45044 1.23502 1.51409 1.11147 1.20013 0.86353 0.80424 0.83313 1.90753 1.38339 1.57582 1.54986 1.20225 0.87101 0.81350 0.83309 1.90718 1.38664 1.58640 1.54790 1.46075 1.24505 1.51303 1.11348 1.21565 0.86496 0.93291 0.96625 1.18401 0.94756 0.93450 0.88580 1.21706 0.96062 0.98069 1.02316 1.21706 0.97434 0.96240 1.02803 1.21256 1.05074 1.33103 0.96731 0.92973 1.25510 0.98131 0.96970 0.96899 1.69933 1.32111 1.46109 1.05831 0.85648 0.80152 0.78538 0.78101 1.19585 1.20964 1.20948 0.90004 0.90973 0.91695 0.84679 0.84285 0.84317 0.84623 0.86317 0.85978 0.74005 0.74903 0.92615 0.92572 0.95193 0.95690 0.91816 0.91809 0.95719 0.95211 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.33 71.23 0.66 -0.90 16 2 C -0.09 -1.48 5.88 -19.87 -0.12 -1.60 16 3 C -0.13 -1.93 9.70 22.27 0.22 -1.72 16 4 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 5 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 6 C -0.13 -1.88 9.30 22.27 0.21 -1.67 16 7 C -0.07 -1.12 5.61 -19.87 -0.11 -1.23 16 8 C -0.11 -1.58 5.07 -11.52 -0.06 -1.64 16 9 H 0.13 1.60 6.92 -2.39 -0.02 1.58 16 10 C -0.16 -2.00 9.79 30.62 0.30 -1.70 16 11 C 0.07 1.30 6.06 44.99 0.27 1.57 16 12 H 0.13 2.79 7.40 -2.39 -0.02 2.77 16 13 N -0.66 -14.38 5.56 -443.87 -2.47 -16.85 16 14 C 0.52 15.22 7.89 87.27 0.69 15.91 16 15 O -0.54 -18.20 16.04 -3.24 -0.05 -18.25 16 16 C 0.50 16.85 7.89 87.27 0.69 17.54 16 17 O -0.55 -20.07 16.48 -3.25 -0.05 -20.12 16 18 N -0.68 -24.59 4.95 -464.42 -2.30 -26.89 16 19 C 0.14 5.89 4.50 86.38 0.39 6.28 16 20 C 0.05 2.25 0.50 -52.93 -0.03 2.23 16 21 C -0.12 -5.62 8.08 71.98 0.58 -5.03 16 22 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 23 C -0.52 -27.09 8.01 25.60 0.21 -26.88 16 24 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 25 C 0.02 1.28 5.15 84.65 0.44 1.72 16 26 N -0.90 -48.28 9.35 21.44 0.20 -48.08 16 27 Si 0.95 42.20 29.54 68.60 2.03 44.22 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 30 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 31 H 0.08 0.87 8.14 -2.38 -0.02 0.86 16 32 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 33 H 0.06 0.92 6.65 -2.39 -0.02 0.91 16 34 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 36 H 0.14 1.33 8.06 -2.92 -0.02 1.30 16 37 H 0.14 1.59 6.02 -2.91 -0.02 1.57 16 38 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.12 1.21 6.18 -2.38 -0.01 1.20 16 40 H 0.42 7.88 8.30 -92.71 -0.77 7.11 16 41 H 0.41 14.66 5.63 -92.71 -0.52 14.14 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 45 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 47 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 48 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 50 H 0.26 13.39 8.31 -92.70 -0.77 12.62 16 Total: -1.00 -61.34 404.31 2.40 -58.94 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.31 Total: 32.33 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.36 Total: -5.30 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -4.57 Total: -91.82 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.11 Total: -38.37 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -61.34 2.40 -58.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118297642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.423 kcal (2) G-P(sol) polarization free energy of solvation -61.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds