Wall clock time and date at job start Wed Apr 1 2020 04:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38258 * 120.00034 * 2 1 4 4 C 1.38207 * 119.99769 * 180.23299 * 3 2 1 5 5 C 1.38257 * 120.00267 * 359.80659 * 4 3 2 6 6 C 1.38210 * 119.99976 * 359.97438 * 5 4 3 7 7 C 1.38218 * 119.99776 * 179.78756 * 2 1 3 8 8 C 1.50697 * 120.00031 * 359.97438 * 7 2 1 9 9 H 1.08994 * 109.47354 * 326.14737 * 8 7 2 10 10 C 1.52999 * 109.46953 * 86.14633 * 8 7 2 11 11 N 1.46499 * 109.46804 * 206.14363 * 8 7 2 12 12 C 1.46503 * 120.00034 * 243.68099 * 11 8 7 13 13 C 1.34779 * 119.99807 * 63.68640 * 11 8 7 14 14 O 1.21344 * 120.00040 * 359.03551 * 13 11 8 15 15 C 1.49454 * 119.99450 * 179.03166 * 13 11 8 16 16 O 1.21348 * 120.00571 * 4.16668 * 15 13 11 17 17 N 1.34783 * 119.99502 * 184.16351 * 15 13 11 18 18 C 1.46499 * 119.99793 * 185.05009 * 17 15 13 19 19 C 1.53004 * 109.46992 * 184.84536 * 18 17 15 20 20 C 1.50698 * 115.54598 * 306.02899 * 19 18 17 21 21 H 1.08005 * 119.99402 * 123.48655 * 20 19 18 22 22 C 1.37875 * 120.00470 * 303.20349 * 20 19 18 23 23 N 1.31519 * 120.00352 * 174.10095 * 22 20 19 24 24 Si 1.86795 * 119.99676 * 354.10872 * 22 20 19 25 25 H 1.48507 * 109.47396 * 94.51495 * 24 22 20 26 26 H 1.48504 * 109.46849 * 214.51306 * 24 22 20 27 27 H 1.48497 * 109.47287 * 334.50956 * 24 22 20 28 28 C 1.52998 * 117.49822 * 91.69767 * 19 18 17 29 29 C 1.52998 * 117.50042 * 160.36059 * 19 18 17 30 30 H 1.09000 * 109.47296 * 270.21134 * 1 2 3 31 31 H 1.09003 * 109.47569 * 30.21302 * 1 2 3 32 32 H 1.09005 * 109.47825 * 150.21037 * 1 2 3 33 33 H 1.07999 * 120.00105 * 0.05805 * 3 2 1 34 34 H 1.08009 * 119.99986 * 179.83323 * 4 3 2 35 35 H 1.08006 * 120.00394 * 180.02562 * 5 4 3 36 36 H 1.07996 * 120.00363 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.47392 * 299.99845 * 10 8 7 38 38 H 1.09003 * 109.47013 * 59.99626 * 10 8 7 39 39 H 1.08998 * 109.47083 * 179.97438 * 10 8 7 40 40 H 1.09004 * 109.47030 * 263.07136 * 12 11 8 41 41 H 1.08995 * 109.46907 * 23.07312 * 12 11 8 42 42 H 1.09004 * 109.46971 * 143.07517 * 12 11 8 43 43 H 0.96997 * 120.00058 * 5.05645 * 17 15 13 44 44 H 1.08995 * 109.46959 * 64.84926 * 18 17 15 45 45 H 1.08996 * 109.47156 * 304.84029 * 18 17 15 46 46 H 0.96996 * 119.99883 * 180.02562 * 23 22 20 47 47 H 1.08995 * 117.49775 * 214.99889 * 28 19 18 48 48 H 1.08997 * 117.49987 * 0.02755 * 28 19 18 49 49 H 1.09004 * 117.49745 * 359.97438 * 29 19 18 50 50 H 1.08995 * 117.50083 * 144.96702 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 -0.0049 5 6 4.2716 -0.0001 -0.0057 6 6 3.5806 -1.1970 -0.0011 7 6 2.1980 -1.1970 0.0044 8 6 1.4445 -2.5021 0.0099 9 1 0.5239 -2.3878 0.5822 10 6 1.1049 -2.9009 -1.4277 11 7 2.2743 -3.5425 0.6222 12 6 2.7119 -4.6928 -0.1726 13 6 2.6352 -3.4415 1.9169 14 8 2.2874 -2.4801 2.5705 15 6 3.4637 -4.5137 2.5474 16 8 3.8750 -5.4368 1.8757 17 7 3.7541 -4.4553 3.8623 18 6 4.6563 -5.4441 4.4578 19 6 4.7218 -5.2285 5.9711 20 6 5.0847 -3.8345 6.4139 21 1 4.4244 -3.2875 7.0707 22 6 6.2622 -3.2595 5.9852 23 7 6.5248 -2.0039 6.2753 24 14 7.4846 -4.2640 4.9922 25 1 7.2489 -4.0391 3.5433 26 1 8.8666 -3.8460 5.3396 27 1 7.3102 -5.7053 5.3043 28 6 3.7348 -6.0111 6.8396 29 6 5.2169 -6.3939 6.8300 30 1 -0.3634 0.0038 1.0276 31 1 -0.3634 0.8881 -0.5171 32 1 -0.3635 -0.8919 -0.5106 33 1 1.6583 2.1327 0.0009 34 1 4.1204 2.1326 -0.0076 35 1 5.3516 -0.0001 -0.0091 36 1 4.1205 -2.1323 -0.0022 37 1 0.4875 -2.1267 -1.8834 38 1 2.0255 -3.0151 -2.0001 39 1 0.5603 -3.8450 -1.4238 40 1 2.0396 -5.5326 0.0031 41 1 2.6968 -4.4303 -1.2304 42 1 3.7248 -4.9712 0.1183 43 1 3.3657 -3.7587 4.4143 44 1 5.6527 -5.3301 4.0311 45 1 4.2843 -6.4472 4.2495 46 1 7.3530 -1.5994 5.9733 47 1 3.3480 -5.5178 7.7312 48 1 3.0391 -6.6799 6.3328 49 1 5.4955 -7.3143 6.3169 50 1 5.8055 -6.1524 7.7150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119167125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:23 Heat of formation + Delta-G solvation = 1.056731 kcal Electronic energy + Delta-G solvation = -31258.140307 eV Core-core repulsion = 27252.076740 eV Total energy + Delta-G solvation = -4006.063567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.84514 -39.49235 -38.15588 -37.04540 -36.32931 -33.66722 -33.08395 -32.22721 -31.72237 -29.64513 -27.48841 -27.35964 -26.67009 -25.57776 -24.16768 -22.85889 -21.64425 -21.40781 -20.47299 -19.63425 -18.98543 -17.48469 -17.02120 -16.88833 -16.35242 -15.71159 -15.63669 -15.28402 -14.99964 -14.79658 -14.51789 -14.18626 -13.98086 -13.72196 -13.40633 -13.22043 -13.09083 -12.97542 -12.92358 -12.78422 -12.54486 -12.37221 -12.27660 -12.23671 -12.13600 -11.83927 -11.60923 -11.09634 -10.97183 -10.91558 -10.82113 -10.73005 -10.57727 -10.26832 -9.62294 -9.28324 -9.09243 -8.92137 -8.74068 -8.67651 -8.52970 -8.47708 -8.38039 -6.20118 -4.22088 1.38325 1.46411 1.80756 2.57656 3.23121 3.34075 3.37255 3.57391 3.73731 3.88325 4.33701 4.56522 4.67390 4.80232 4.81792 4.93567 4.96869 5.01325 5.06770 5.16469 5.19257 5.24327 5.40294 5.50631 5.53693 5.60164 5.60486 5.63761 5.71054 5.78163 5.83061 5.86049 6.00054 6.07815 6.08230 6.11790 6.14986 6.35431 6.38906 6.44995 6.53816 6.58559 6.62271 6.67772 6.80856 6.94975 7.06622 7.08134 7.17247 7.62514 7.77415 8.15447 8.38587 8.49521 8.83320 9.42388 10.90853 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.003647 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.313605 B = 7674.938141 C = 8617.791352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.076 4.076 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.099 4.099 7 C -0.085 4.085 8 C 0.184 3.816 9 H 0.090 0.910 10 C -0.155 4.155 11 N -0.591 5.591 12 C 0.058 3.942 13 C 0.505 3.495 14 O -0.500 6.500 15 C 0.498 3.502 16 O -0.539 6.539 17 N -0.662 5.662 18 C 0.149 3.851 19 C -0.017 4.017 20 C -0.493 4.493 21 H 0.081 0.919 22 C 0.086 3.914 23 N -0.885 5.885 24 Si 0.868 3.132 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.253 1.253 28 C -0.180 4.180 29 C -0.188 4.188 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.422 0.578 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.266 0.734 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 0.085 -16.704 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.139 4.139 4 C -0.135 4.135 5 C -0.139 4.139 6 C -0.117 4.117 7 C -0.086 4.086 8 C 0.081 3.919 9 H 0.108 0.892 10 C -0.212 4.212 11 N -0.327 5.327 12 C -0.083 4.083 13 C 0.287 3.713 14 O -0.373 6.373 15 C 0.278 3.722 16 O -0.419 6.419 17 N -0.313 5.313 18 C 0.026 3.974 19 C -0.018 4.018 20 C -0.529 4.529 21 H 0.099 0.901 22 C -0.118 4.118 23 N -0.521 5.521 24 Si 0.697 3.303 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.177 1.177 28 C -0.217 4.217 29 C -0.227 4.227 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.126 0.874 43 H 0.261 0.739 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.314 0.124 -16.793 19.707 hybrid contribution 0.829 -0.082 -0.185 0.854 sum -9.484 0.042 -16.978 19.447 Atomic orbital electron populations 1.20863 0.91438 1.02448 1.02695 1.19588 0.95780 0.92385 0.99922 1.20934 0.94244 0.97170 1.01503 1.21095 0.94329 0.97925 1.00188 1.21107 0.99895 0.92514 1.00373 1.20908 0.93625 0.98140 0.99054 1.19814 0.93907 0.93965 1.00923 1.19945 0.92929 0.84361 0.94624 0.89246 1.22131 1.02531 1.02358 0.94177 1.47796 1.51407 1.23554 1.09933 1.22493 1.03806 0.86725 0.95304 1.20324 0.81358 0.87216 0.82405 1.90800 1.52825 1.31771 1.61871 1.19997 0.82227 0.86275 0.83713 1.90589 1.54993 1.34835 1.61484 1.45808 1.45501 1.32377 1.07566 1.21222 0.92114 0.89926 0.94124 1.19560 1.00792 0.93963 0.87521 1.20261 1.06221 0.95500 1.30965 0.90148 1.24909 0.97601 0.94306 0.95025 1.69888 1.25140 1.11581 1.45466 0.87056 0.80701 0.82211 0.80375 1.20580 1.21835 1.17682 1.22816 0.91906 1.03989 1.02984 1.23071 0.96543 0.99312 1.03752 0.90823 0.91595 0.91537 0.86219 0.86246 0.86245 0.86625 0.90653 0.91225 0.91228 0.92432 0.91225 0.87439 0.73881 0.92411 0.92198 0.92375 0.89520 0.90811 0.91114 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.21 36.00 0.33 -0.78 16 2 C -0.08 -0.95 5.88 -104.62 -0.62 -1.57 16 3 C -0.12 -1.47 9.70 -39.59 -0.38 -1.85 16 4 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 5 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 6 C -0.10 -1.48 8.72 -39.58 -0.34 -1.82 16 7 C -0.09 -1.16 4.04 -104.62 -0.42 -1.58 16 8 C 0.18 2.22 2.15 -69.08 -0.15 2.07 16 9 H 0.09 1.10 6.92 -51.93 -0.36 0.74 16 10 C -0.15 -1.28 7.74 37.16 0.29 -0.99 16 11 N -0.59 -8.31 2.05 -175.77 -0.36 -8.67 16 12 C 0.06 0.69 8.79 59.85 0.53 1.22 16 13 C 0.50 9.02 6.74 -11.58 -0.08 8.94 16 14 O -0.50 -10.17 15.69 5.50 0.09 -10.09 16 15 C 0.50 9.64 7.79 -11.58 -0.09 9.55 16 16 O -0.54 -10.48 13.11 5.50 0.07 -10.41 16 17 N -0.66 -13.76 5.40 -60.73 -0.33 -14.09 16 18 C 0.15 3.17 5.00 -4.04 -0.02 3.15 16 19 C -0.02 -0.38 1.01 -155.66 -0.16 -0.54 16 20 C -0.49 -13.04 8.66 -34.44 -0.30 -13.34 16 21 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 22 C 0.09 2.38 5.46 -17.82 -0.10 2.29 16 23 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 24 Si 0.87 21.34 24.52 -169.99 -4.17 17.17 16 25 H -0.28 -6.97 7.06 56.52 0.40 -6.57 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 27 H -0.25 -5.82 6.21 56.52 0.35 -5.47 16 28 C -0.18 -3.46 9.92 -26.69 -0.26 -3.73 16 29 C -0.19 -3.78 8.98 -26.69 -0.24 -4.02 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.07 0.53 5.53 -51.93 -0.29 0.24 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.12 1.77 7.15 -52.49 -0.38 1.40 16 37 H 0.07 0.53 7.02 -51.93 -0.36 0.16 16 38 H 0.07 0.57 6.77 -51.93 -0.35 0.22 16 39 H 0.07 0.49 7.86 -51.93 -0.41 0.09 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.63 5.51 -51.93 -0.29 0.34 16 42 H 0.11 1.52 5.45 -51.93 -0.28 1.24 16 43 H 0.42 9.16 7.42 -40.82 -0.30 8.86 16 44 H 0.06 1.33 4.20 -51.93 -0.22 1.11 16 45 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 48 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -31.32 394.33 -8.28 -39.60 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -7.49 Total: 13.06 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.81 Total: -7.02 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.09 Total: -48.25 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.16 Total: -20.50 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.17 Total: 17.17 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.32 -8.28 -39.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119167125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.653 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds