Wall clock time and date at job start Wed Apr 1 2020 04:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38258 * 120.00034 * 2 1 4 4 C 1.38207 * 119.99769 * 180.23299 * 3 2 1 5 5 C 1.38257 * 120.00267 * 359.80659 * 4 3 2 6 6 C 1.38210 * 119.99976 * 359.97438 * 5 4 3 7 7 C 1.38218 * 119.99776 * 179.78756 * 2 1 3 8 8 C 1.50697 * 120.00031 * 359.97438 * 7 2 1 9 9 H 1.08994 * 109.47354 * 326.14737 * 8 7 2 10 10 C 1.52999 * 109.46953 * 86.14633 * 8 7 2 11 11 N 1.46499 * 109.46804 * 206.14363 * 8 7 2 12 12 C 1.46503 * 120.00034 * 243.68099 * 11 8 7 13 13 C 1.34779 * 119.99807 * 63.68640 * 11 8 7 14 14 O 1.21344 * 120.00040 * 359.03551 * 13 11 8 15 15 C 1.49454 * 119.99450 * 179.03166 * 13 11 8 16 16 O 1.21348 * 120.00571 * 4.16668 * 15 13 11 17 17 N 1.34783 * 119.99502 * 184.16351 * 15 13 11 18 18 C 1.46499 * 119.99793 * 185.05009 * 17 15 13 19 19 C 1.53004 * 109.46992 * 184.84536 * 18 17 15 20 20 C 1.50698 * 115.54598 * 306.02899 * 19 18 17 21 21 H 1.08005 * 119.99402 * 123.48655 * 20 19 18 22 22 C 1.37875 * 120.00470 * 303.20349 * 20 19 18 23 23 N 1.31519 * 120.00352 * 174.10095 * 22 20 19 24 24 Si 1.86795 * 119.99676 * 354.10872 * 22 20 19 25 25 H 1.48507 * 109.47396 * 94.51495 * 24 22 20 26 26 H 1.48504 * 109.46849 * 214.51306 * 24 22 20 27 27 H 1.48497 * 109.47287 * 334.50956 * 24 22 20 28 28 C 1.52998 * 117.49822 * 91.69767 * 19 18 17 29 29 C 1.52998 * 117.50042 * 160.36059 * 19 18 17 30 30 H 1.09000 * 109.47296 * 270.21134 * 1 2 3 31 31 H 1.09003 * 109.47569 * 30.21302 * 1 2 3 32 32 H 1.09005 * 109.47825 * 150.21037 * 1 2 3 33 33 H 1.07999 * 120.00105 * 0.05805 * 3 2 1 34 34 H 1.08009 * 119.99986 * 179.83323 * 4 3 2 35 35 H 1.08006 * 120.00394 * 180.02562 * 5 4 3 36 36 H 1.07996 * 120.00363 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.47392 * 299.99845 * 10 8 7 38 38 H 1.09003 * 109.47013 * 59.99626 * 10 8 7 39 39 H 1.08998 * 109.47083 * 179.97438 * 10 8 7 40 40 H 1.09004 * 109.47030 * 263.07136 * 12 11 8 41 41 H 1.08995 * 109.46907 * 23.07312 * 12 11 8 42 42 H 1.09004 * 109.46971 * 143.07517 * 12 11 8 43 43 H 0.96997 * 120.00058 * 5.05645 * 17 15 13 44 44 H 1.08995 * 109.46959 * 64.84926 * 18 17 15 45 45 H 1.08996 * 109.47156 * 304.84029 * 18 17 15 46 46 H 0.96996 * 119.99883 * 180.02562 * 23 22 20 47 47 H 1.08995 * 117.49775 * 214.99889 * 28 19 18 48 48 H 1.08997 * 117.49987 * 0.02755 * 28 19 18 49 49 H 1.09004 * 117.49745 * 359.97438 * 29 19 18 50 50 H 1.08995 * 117.50083 * 144.96702 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 -0.0049 5 6 4.2716 -0.0001 -0.0057 6 6 3.5806 -1.1970 -0.0011 7 6 2.1980 -1.1970 0.0044 8 6 1.4445 -2.5021 0.0099 9 1 0.5239 -2.3878 0.5822 10 6 1.1049 -2.9009 -1.4277 11 7 2.2743 -3.5425 0.6222 12 6 2.7119 -4.6928 -0.1726 13 6 2.6352 -3.4415 1.9169 14 8 2.2874 -2.4801 2.5705 15 6 3.4637 -4.5137 2.5474 16 8 3.8750 -5.4368 1.8757 17 7 3.7541 -4.4553 3.8623 18 6 4.6563 -5.4441 4.4578 19 6 4.7218 -5.2285 5.9711 20 6 5.0847 -3.8345 6.4139 21 1 4.4244 -3.2875 7.0707 22 6 6.2622 -3.2595 5.9852 23 7 6.5248 -2.0039 6.2753 24 14 7.4846 -4.2640 4.9922 25 1 7.2489 -4.0391 3.5433 26 1 8.8666 -3.8460 5.3396 27 1 7.3102 -5.7053 5.3043 28 6 3.7348 -6.0111 6.8396 29 6 5.2169 -6.3939 6.8300 30 1 -0.3634 0.0038 1.0276 31 1 -0.3634 0.8881 -0.5171 32 1 -0.3635 -0.8919 -0.5106 33 1 1.6583 2.1327 0.0009 34 1 4.1204 2.1326 -0.0076 35 1 5.3516 -0.0001 -0.0091 36 1 4.1205 -2.1323 -0.0022 37 1 0.4875 -2.1267 -1.8834 38 1 2.0255 -3.0151 -2.0001 39 1 0.5603 -3.8450 -1.4238 40 1 2.0396 -5.5326 0.0031 41 1 2.6968 -4.4303 -1.2304 42 1 3.7248 -4.9712 0.1183 43 1 3.3657 -3.7587 4.4143 44 1 5.6527 -5.3301 4.0311 45 1 4.2843 -6.4472 4.2495 46 1 7.3530 -1.5994 5.9733 47 1 3.3480 -5.5178 7.7312 48 1 3.0391 -6.6799 6.3328 49 1 5.4955 -7.3143 6.3169 50 1 5.8055 -6.1524 7.7150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119167125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:22 Heat of formation + Delta-G solvation = -17.862363 kcal Electronic energy + Delta-G solvation = -31258.960700 eV Core-core repulsion = 27252.076740 eV Total energy + Delta-G solvation = -4006.883961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.12284 -40.70805 -39.53840 -38.68232 -37.51805 -35.14284 -34.33165 -34.12960 -32.73030 -30.55456 -29.09998 -28.34038 -27.66221 -27.46057 -25.46949 -23.93500 -23.19446 -22.46710 -21.70413 -21.25675 -20.43272 -19.01277 -18.35905 -18.04647 -17.94515 -17.24215 -17.05905 -16.65609 -16.29566 -16.14884 -15.71722 -15.47431 -15.24717 -14.97160 -14.94447 -14.66118 -14.43802 -14.08980 -14.05927 -13.93224 -13.89587 -13.77176 -13.52603 -13.06035 -13.04428 -12.98491 -12.76175 -12.67252 -12.53360 -12.17028 -12.13570 -12.04563 -11.93931 -11.79633 -11.49761 -11.12376 -10.78992 -10.58982 -10.32326 -10.10592 -9.85261 -9.70720 -9.47533 -8.35014 -6.38121 0.32635 0.39846 0.44424 1.25156 1.28965 1.31775 1.41538 2.11464 2.28646 2.46068 2.79869 2.93987 3.29756 3.41317 3.65674 3.87586 3.93976 3.94722 4.05984 4.11761 4.17457 4.21296 4.22898 4.41258 4.41554 4.46574 4.58953 4.64009 4.70881 4.72108 4.75255 4.82796 4.88541 4.91594 4.92287 4.96310 5.00044 5.11388 5.16932 5.19624 5.22944 5.33237 5.43935 5.52199 5.55742 5.57308 5.63852 5.65833 5.93094 6.09240 6.25032 6.29906 6.67081 6.71280 6.94204 7.28685 8.79914 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.003647 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.313605 B = 7674.938141 C = 8617.791352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.144 4.144 6 C -0.123 4.123 7 C -0.096 4.096 8 C 0.179 3.821 9 H 0.090 0.910 10 C -0.148 4.148 11 N -0.577 5.577 12 C 0.056 3.944 13 C 0.502 3.498 14 O -0.535 6.535 15 C 0.495 3.505 16 O -0.539 6.539 17 N -0.673 5.673 18 C 0.155 3.845 19 C -0.048 4.048 20 C -0.480 4.480 21 H 0.040 0.960 22 C 0.035 3.965 23 N -0.937 5.937 24 Si 0.921 3.079 25 H -0.289 1.289 26 H -0.296 1.296 27 H -0.222 1.222 28 C -0.159 4.159 29 C -0.177 4.177 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.415 0.585 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.264 0.736 47 H 0.081 0.919 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.278 -1.780 -18.764 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.142 4.142 7 C -0.097 4.097 8 C 0.077 3.923 9 H 0.108 0.892 10 C -0.205 4.205 11 N -0.310 5.310 12 C -0.084 4.084 13 C 0.284 3.716 14 O -0.412 6.412 15 C 0.276 3.724 16 O -0.419 6.419 17 N -0.323 5.323 18 C 0.032 3.968 19 C -0.049 4.049 20 C -0.518 4.518 21 H 0.058 0.942 22 C -0.164 4.164 23 N -0.576 5.576 24 Si 0.747 3.253 25 H -0.217 1.217 26 H -0.223 1.223 27 H -0.145 1.145 28 C -0.196 4.196 29 C -0.215 4.215 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.252 0.748 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.100 0.900 48 H 0.122 0.878 49 H 0.118 0.882 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.043 -1.801 -18.894 22.478 hybrid contribution 1.268 0.533 0.446 1.446 sum -10.775 -1.268 -18.448 21.402 Atomic orbital electron populations 1.20920 0.89124 1.04404 1.02770 1.20014 0.97583 0.92011 0.98946 1.21339 0.94191 0.98368 1.00470 1.21393 0.95060 0.98167 0.99807 1.21302 1.00311 0.93178 1.01404 1.20947 0.94565 0.97828 1.00830 1.20041 0.93517 0.95284 1.00829 1.20242 0.92035 0.83218 0.96787 0.89239 1.22147 1.03204 1.03900 0.91241 1.47912 1.50146 1.24294 1.08656 1.22590 1.02631 0.86417 0.96800 1.20131 0.81402 0.86436 0.83636 1.90781 1.54513 1.32841 1.63036 1.20319 0.82149 0.86623 0.83271 1.90594 1.55029 1.34977 1.61300 1.45867 1.45894 1.32398 1.08188 1.21136 0.91525 0.91162 0.92950 1.19449 1.04394 0.92379 0.88676 1.20380 1.04820 0.97473 1.29095 0.94174 1.25589 0.99478 0.94955 0.96363 1.70025 1.25898 1.13563 1.48125 0.86221 0.78231 0.82593 0.78228 1.21657 1.22304 1.14472 1.22876 0.92100 1.02762 1.01834 1.23110 0.97036 0.98758 1.02582 0.91520 0.89409 0.89930 0.83600 0.84313 0.86153 0.88061 0.88799 0.90967 0.89349 0.91094 0.87853 0.89722 0.74799 0.94185 0.89782 0.92663 0.90005 0.87847 0.88235 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.21 71.23 0.66 -1.25 16 2 C -0.09 -2.01 5.88 -19.87 -0.12 -2.13 16 3 C -0.13 -2.92 9.70 22.27 0.22 -2.70 16 4 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 5 C -0.14 -4.21 10.05 22.27 0.22 -3.99 16 6 C -0.12 -3.77 8.72 22.27 0.19 -3.58 16 7 C -0.10 -2.56 4.04 -19.87 -0.08 -2.64 16 8 C 0.18 4.03 2.15 44.24 0.10 4.12 16 9 H 0.09 2.05 6.92 -2.39 -0.02 2.03 16 10 C -0.15 -1.97 7.74 71.98 0.56 -1.41 16 11 N -0.58 -15.67 2.05 -828.38 -1.69 -17.36 16 12 C 0.06 1.23 8.79 127.77 1.12 2.36 16 13 C 0.50 18.09 6.74 87.27 0.59 18.68 16 14 O -0.54 -22.45 15.69 -3.23 -0.05 -22.51 16 15 C 0.50 19.17 7.79 87.27 0.68 19.85 16 16 O -0.54 -20.50 13.11 -3.24 -0.04 -20.55 16 17 N -0.67 -28.13 5.40 -464.40 -2.51 -30.63 16 18 C 0.16 6.39 5.00 86.38 0.43 6.82 16 19 C -0.05 -2.07 1.01 -52.93 -0.05 -2.12 16 20 C -0.48 -26.08 8.66 25.60 0.22 -25.86 16 21 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 22 C 0.04 2.01 5.46 84.65 0.46 2.48 16 23 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 24 Si 0.92 44.63 24.52 68.60 1.68 46.31 16 25 H -0.29 -14.39 7.06 99.48 0.70 -13.69 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 27 H -0.22 -9.55 6.21 99.48 0.62 -8.93 16 28 C -0.16 -5.73 9.92 30.62 0.30 -5.43 16 29 C -0.18 -6.59 8.98 30.62 0.27 -6.31 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 32 H 0.08 1.07 5.53 -2.38 -0.01 1.05 16 33 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 35 H 0.12 3.30 8.06 -2.91 -0.02 3.27 16 36 H 0.10 3.25 7.15 -2.91 -0.02 3.23 16 37 H 0.09 0.96 7.02 -2.39 -0.02 0.94 16 38 H 0.07 0.95 6.77 -2.39 -0.02 0.94 16 39 H 0.09 0.88 7.86 -2.39 -0.02 0.87 16 40 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.10 1.57 5.51 -2.39 -0.01 1.55 16 42 H 0.08 2.31 5.45 -2.39 -0.01 2.30 16 43 H 0.42 18.60 7.42 -92.71 -0.69 17.91 16 44 H 0.04 1.79 4.20 -2.39 -0.01 1.78 16 45 H 0.08 3.04 8.05 -2.39 -0.02 3.02 16 46 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 47 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 48 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 49 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 50 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -71.31 394.33 3.87 -67.44 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: 0.18 Total: 41.27 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 6.00 Total: -6.10 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -3.90 Total: -105.88 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.09 Total: -43.05 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.68 Total: 46.31 kcal Total: -71.31 3.87 -67.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119167125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.580 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds