Wall clock time and date at job start Wed Apr 1 2020 04:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38230 * 120.00332 * 2 1 4 4 C 1.38234 * 119.99877 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99920 * 180.02562 * 4 3 2 6 6 C 1.38231 * 120.00376 * 359.97438 * 4 3 2 7 7 C 1.38241 * 119.99869 * 0.02562 * 6 4 3 8 8 C 1.50698 * 120.00101 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.46906 * 20.00808 * 8 7 6 10 10 C 1.52994 * 109.47201 * 260.00300 * 8 7 6 11 11 N 1.46501 * 109.46863 * 140.00106 * 8 7 6 12 12 C 1.34778 * 120.00189 * 204.99870 * 11 8 7 13 13 O 1.21345 * 119.99684 * 0.02562 * 12 11 8 14 14 C 1.49449 * 120.00001 * 180.02562 * 12 11 8 15 15 O 1.21347 * 120.00228 * 5.09493 * 14 12 11 16 16 N 1.34774 * 120.00048 * 185.09256 * 14 12 11 17 17 C 1.46502 * 120.00331 * 185.04195 * 16 14 12 18 18 C 1.52996 * 109.47063 * 184.77839 * 17 16 14 19 19 C 1.50698 * 115.55121 * 294.81386 * 18 17 16 20 20 H 1.08003 * 119.99766 * 95.20398 * 19 18 17 21 21 C 1.37874 * 119.99926 * 274.92660 * 19 18 17 22 22 N 1.31507 * 120.00401 * 355.41780 * 21 19 18 23 23 Si 1.86807 * 119.99884 * 175.41717 * 21 19 18 24 24 H 1.48500 * 109.47157 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47138 * 120.00273 * 23 21 19 26 26 H 1.48505 * 109.47155 * 240.00161 * 23 21 19 27 27 C 1.53002 * 117.49906 * 80.48488 * 18 17 16 28 28 C 1.53002 * 117.49925 * 149.14404 * 18 17 16 29 29 C 1.38234 * 119.99635 * 180.23204 * 2 1 3 30 30 H 1.09000 * 109.47269 * 89.99620 * 1 2 3 31 31 H 1.09001 * 109.47193 * 210.00584 * 1 2 3 32 32 H 1.09003 * 109.46814 * 330.00150 * 1 2 3 33 33 H 1.08002 * 119.99989 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47173 * 269.97691 * 5 4 3 35 35 H 1.09007 * 109.47383 * 29.97513 * 5 4 3 36 36 H 1.09000 * 109.47490 * 149.97816 * 5 4 3 37 37 H 1.07998 * 120.00425 * 180.02562 * 6 4 3 38 38 H 1.09000 * 109.47257 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.47605 * 300.00080 * 10 8 7 40 40 H 1.09002 * 109.47230 * 60.00628 * 10 8 7 41 41 H 0.97003 * 120.00317 * 25.00668 * 11 8 7 42 42 H 0.97000 * 119.99834 * 5.03638 * 16 14 12 43 43 H 1.08991 * 109.46950 * 64.77719 * 17 16 14 44 44 H 1.09002 * 109.46795 * 304.77265 * 17 16 14 45 45 H 0.97005 * 120.00851 * 184.99676 * 22 21 19 46 46 H 1.09007 * 117.49900 * 214.99948 * 27 18 17 47 47 H 1.08994 * 117.50021 * 0.02562 * 27 18 17 48 48 H 1.09005 * 117.49794 * 359.97438 * 28 18 17 49 49 H 1.09000 * 117.49885 * 144.96827 * 28 18 17 50 50 H 1.08002 * 120.00018 * 0.04065 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.3342 2.5020 0.0011 6 6 4.2718 -0.0002 0.0016 7 6 3.5805 -1.1974 0.0016 8 6 4.3339 -2.5025 0.0022 9 1 5.3517 -2.3342 0.3542 10 6 4.3726 -3.0697 -1.4182 11 7 3.6613 -3.4541 0.8900 12 6 4.3590 -4.4621 1.4501 13 8 5.5443 -4.5811 1.2194 14 6 3.6727 -5.4333 2.3553 15 8 2.4711 -5.3707 2.5133 16 7 4.3882 -6.3786 2.9962 17 6 3.7047 -7.3985 3.7955 18 6 4.7424 -8.2690 4.5069 19 6 5.6198 -9.1007 3.6071 20 1 6.5900 -8.7323 3.3082 21 6 5.1862 -10.3345 3.1703 22 7 4.0480 -10.8251 3.6098 23 14 6.2158 -11.3093 1.9539 24 1 7.4426 -10.5430 1.6180 25 1 6.5959 -12.6111 2.5587 26 1 5.4274 -11.5488 0.7184 27 6 5.3677 -7.7171 5.7896 28 6 4.3559 -8.8635 5.8627 29 6 2.1982 -1.1972 -0.0048 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1324 0.0004 34 1 4.5166 2.8166 -1.0264 35 1 3.7448 3.2617 0.5145 36 1 5.2862 2.3716 0.5156 37 1 5.3517 -0.0003 0.0024 38 1 4.9171 -4.0139 -1.4177 39 1 3.3548 -3.2379 -1.7702 40 1 4.8731 -2.3616 -2.0787 41 1 2.7138 -3.3589 1.0746 42 1 5.3558 -6.3838 2.9281 43 1 3.0932 -8.0218 3.1432 44 1 3.0684 -6.9136 4.5359 45 1 3.7778 -11.7225 3.3598 46 1 6.4137 -7.9556 5.9827 47 1 5.0394 -6.7340 6.1269 48 1 3.3624 -8.6340 6.2481 49 1 4.7358 -9.8563 6.1036 50 1 1.6581 -2.1325 -0.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323277200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:55 Heat of formation + Delta-G solvation = -39.453399 kcal Electronic energy + Delta-G solvation = -29369.311925 eV Core-core repulsion = 25361.491707 eV Total energy + Delta-G solvation = -4007.820218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62534 -39.78125 -38.25045 -36.71859 -36.03463 -33.83911 -33.49235 -32.23179 -31.97195 -29.93025 -27.60260 -27.13740 -26.99048 -25.51223 -24.56705 -22.91779 -21.26700 -21.15491 -20.33383 -19.84459 -19.50632 -18.10623 -16.82078 -16.59549 -16.16793 -15.82842 -15.54495 -15.27097 -14.81256 -14.69604 -14.44297 -14.33627 -14.04749 -13.81913 -13.61358 -13.52670 -13.27442 -13.19617 -12.98565 -12.85475 -12.69185 -12.43232 -12.28846 -11.90039 -11.86665 -11.64379 -11.62458 -11.32999 -11.26562 -11.03305 -10.99796 -10.95922 -10.51410 -10.25205 -9.62387 -9.34762 -9.23570 -9.08120 -8.90209 -8.84143 -8.53835 -8.39273 -8.18468 -6.09178 -4.18736 1.01014 1.06895 1.77987 2.66958 3.25658 3.34926 3.38895 3.40077 3.59905 4.03733 4.23860 4.35780 4.46025 4.47331 4.82718 4.87772 4.97380 5.02041 5.03491 5.11918 5.18529 5.19513 5.23207 5.26552 5.32466 5.34261 5.47693 5.51825 5.56118 5.68322 5.80727 5.88661 5.95826 6.01407 6.12912 6.24224 6.28431 6.28972 6.39584 6.39891 6.47582 6.66681 6.70879 6.74852 6.99161 7.08319 7.21991 7.32819 7.49818 7.80960 7.84799 8.14353 8.31403 8.51755 8.83845 9.49047 10.97905 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.002183 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.001067 B =12824.262286 C =13209.409456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C -0.121 4.121 4 C -0.080 4.080 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.082 4.082 8 C 0.182 3.818 9 H 0.100 0.900 10 C -0.159 4.159 11 N -0.703 5.703 12 C 0.510 3.490 13 O -0.517 6.517 14 C 0.495 3.505 15 O -0.541 6.541 16 N -0.666 5.666 17 C 0.159 3.841 18 C 0.020 3.980 19 C -0.499 4.499 20 H 0.063 0.937 21 C 0.073 3.927 22 N -0.876 5.876 23 Si 0.890 3.110 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.283 1.283 27 C -0.210 4.210 28 C -0.139 4.139 29 C -0.118 4.118 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.411 0.589 42 H 0.414 0.586 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.261 0.739 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.088 0.912 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 23.957 -8.261 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.077 4.077 3 C -0.139 4.139 4 C -0.081 4.081 5 C -0.171 4.171 6 C -0.132 4.132 7 C -0.083 4.083 8 C 0.078 3.922 9 H 0.118 0.882 10 C -0.217 4.217 11 N -0.358 5.358 12 C 0.292 3.708 13 O -0.392 6.392 14 C 0.275 3.725 15 O -0.420 6.420 16 N -0.315 5.315 17 C 0.037 3.963 18 C 0.020 3.980 19 C -0.537 4.537 20 H 0.081 0.919 21 C -0.131 4.131 22 N -0.512 5.512 23 Si 0.718 3.282 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.247 4.247 28 C -0.178 4.178 29 C -0.136 4.136 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.142 0.858 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.248 0.752 42 H 0.250 0.750 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.106 0.894 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.800 23.719 -8.371 25.438 hybrid contribution 0.433 -0.699 -0.606 1.022 sum -3.367 23.019 -8.977 24.936 Atomic orbital electron populations 1.20822 0.90975 1.03085 1.02444 1.19882 0.96167 0.92875 0.98801 1.20925 0.93502 0.97556 1.01945 1.19870 0.93808 0.95203 0.99171 1.20796 0.99997 0.93951 1.02371 1.20845 0.99832 0.91087 1.01390 1.19857 0.93874 0.94230 1.00318 1.19856 0.96696 0.84914 0.90718 0.88204 1.22179 1.02788 1.02044 0.94730 1.45925 1.14083 1.28035 1.47721 1.20504 0.87018 0.82087 0.81227 1.90751 1.14928 1.72570 1.60932 1.19914 0.87391 0.83000 0.82242 1.90708 1.14141 1.73094 1.64053 1.45890 1.11955 1.27106 1.46572 1.21215 0.94627 0.87095 0.93392 1.19040 0.96035 0.96279 0.86683 1.20424 1.02028 1.02087 1.29153 0.91934 1.24991 0.94729 0.97536 0.95861 1.69993 1.20985 1.16121 1.44087 0.86565 0.80467 0.79875 0.81322 1.19556 1.21019 1.20922 1.23034 0.98216 0.96740 1.06711 1.22476 0.96493 0.96605 1.02179 1.20839 0.93409 0.97889 1.01499 0.91067 0.91162 0.91499 0.86118 0.91113 0.91529 0.91385 0.85769 0.91208 0.92045 0.91262 0.75205 0.74991 0.90788 0.93396 0.92903 0.90208 0.91648 0.91739 0.89381 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.08 -0.68 5.88 -104.62 -0.62 -1.29 16 3 C -0.12 -1.00 9.36 -39.59 -0.37 -1.37 16 4 C -0.08 -0.67 5.88 -104.63 -0.62 -1.29 16 5 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 6 C -0.11 -1.03 9.33 -39.58 -0.37 -1.40 16 7 C -0.08 -0.82 4.95 -104.62 -0.52 -1.34 16 8 C 0.18 2.03 2.78 -69.09 -0.19 1.84 16 9 H 0.10 1.18 7.44 -51.93 -0.39 0.79 16 10 C -0.16 -1.64 9.46 37.15 0.35 -1.29 16 11 N -0.70 -9.24 5.02 -55.37 -0.28 -9.51 16 12 C 0.51 8.43 7.85 -11.59 -0.09 8.34 16 13 O -0.52 -9.44 16.16 5.50 0.09 -9.35 16 14 C 0.50 9.36 7.88 -11.59 -0.09 9.27 16 15 O -0.54 -11.00 16.47 5.50 0.09 -10.91 16 16 N -0.67 -13.38 5.46 -60.73 -0.33 -13.71 16 17 C 0.16 3.54 5.53 -4.04 -0.02 3.52 16 18 C 0.02 0.48 1.47 -155.66 -0.23 0.25 16 19 C -0.50 -12.95 8.59 -34.44 -0.30 -13.25 16 20 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 21 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 22 N -0.88 -24.09 12.65 55.43 0.70 -23.39 16 23 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C -0.21 -4.38 9.96 -26.69 -0.27 -4.65 16 28 C -0.14 -3.16 9.14 -26.69 -0.24 -3.40 16 29 C -0.12 -1.14 8.71 -39.58 -0.34 -1.48 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.41 5.06 6.37 -40.82 -0.26 4.80 16 42 H 0.41 8.23 7.84 -40.82 -0.32 7.91 16 43 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 44 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 45 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 46 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 50 H 0.12 1.11 6.93 -52.49 -0.36 0.74 16 LS Contribution 421.47 15.07 6.35 6.35 Total: -1.00 -29.57 421.47 -9.73 -39.31 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -8.05 Total: 11.88 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -3.29 Total: -6.44 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.09 Total: -46.62 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.18 Total: -20.26 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -29.57 -9.73 -39.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323277200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.146 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds