Wall clock time and date at job start Wed Apr 1 2020 04:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38230 * 120.00332 * 2 1 4 4 C 1.38234 * 119.99877 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99920 * 180.02562 * 4 3 2 6 6 C 1.38231 * 120.00376 * 359.97438 * 4 3 2 7 7 C 1.38241 * 119.99869 * 0.02562 * 6 4 3 8 8 C 1.50698 * 120.00101 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.46906 * 20.00808 * 8 7 6 10 10 C 1.52994 * 109.47201 * 260.00300 * 8 7 6 11 11 N 1.46501 * 109.46863 * 140.00106 * 8 7 6 12 12 C 1.34778 * 120.00189 * 204.99870 * 11 8 7 13 13 O 1.21345 * 119.99684 * 0.02562 * 12 11 8 14 14 C 1.49449 * 120.00001 * 180.02562 * 12 11 8 15 15 O 1.21347 * 120.00228 * 5.09493 * 14 12 11 16 16 N 1.34774 * 120.00048 * 185.09256 * 14 12 11 17 17 C 1.46502 * 120.00331 * 185.04195 * 16 14 12 18 18 C 1.52996 * 109.47063 * 184.77839 * 17 16 14 19 19 C 1.50698 * 115.55121 * 294.81386 * 18 17 16 20 20 H 1.08003 * 119.99766 * 95.20398 * 19 18 17 21 21 C 1.37874 * 119.99926 * 274.92660 * 19 18 17 22 22 N 1.31507 * 120.00401 * 355.41780 * 21 19 18 23 23 Si 1.86807 * 119.99884 * 175.41717 * 21 19 18 24 24 H 1.48500 * 109.47157 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47138 * 120.00273 * 23 21 19 26 26 H 1.48505 * 109.47155 * 240.00161 * 23 21 19 27 27 C 1.53002 * 117.49906 * 80.48488 * 18 17 16 28 28 C 1.53002 * 117.49925 * 149.14404 * 18 17 16 29 29 C 1.38234 * 119.99635 * 180.23204 * 2 1 3 30 30 H 1.09000 * 109.47269 * 89.99620 * 1 2 3 31 31 H 1.09001 * 109.47193 * 210.00584 * 1 2 3 32 32 H 1.09003 * 109.46814 * 330.00150 * 1 2 3 33 33 H 1.08002 * 119.99989 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47173 * 269.97691 * 5 4 3 35 35 H 1.09007 * 109.47383 * 29.97513 * 5 4 3 36 36 H 1.09000 * 109.47490 * 149.97816 * 5 4 3 37 37 H 1.07998 * 120.00425 * 180.02562 * 6 4 3 38 38 H 1.09000 * 109.47257 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.47605 * 300.00080 * 10 8 7 40 40 H 1.09002 * 109.47230 * 60.00628 * 10 8 7 41 41 H 0.97003 * 120.00317 * 25.00668 * 11 8 7 42 42 H 0.97000 * 119.99834 * 5.03638 * 16 14 12 43 43 H 1.08991 * 109.46950 * 64.77719 * 17 16 14 44 44 H 1.09002 * 109.46795 * 304.77265 * 17 16 14 45 45 H 0.97005 * 120.00851 * 184.99676 * 22 21 19 46 46 H 1.09007 * 117.49900 * 214.99948 * 27 18 17 47 47 H 1.08994 * 117.50021 * 0.02562 * 27 18 17 48 48 H 1.09005 * 117.49794 * 359.97438 * 28 18 17 49 49 H 1.09000 * 117.49885 * 144.96827 * 28 18 17 50 50 H 1.08002 * 120.00018 * 0.04065 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.3342 2.5020 0.0011 6 6 4.2718 -0.0002 0.0016 7 6 3.5805 -1.1974 0.0016 8 6 4.3339 -2.5025 0.0022 9 1 5.3517 -2.3342 0.3542 10 6 4.3726 -3.0697 -1.4182 11 7 3.6613 -3.4541 0.8900 12 6 4.3590 -4.4621 1.4501 13 8 5.5443 -4.5811 1.2194 14 6 3.6727 -5.4333 2.3553 15 8 2.4711 -5.3707 2.5133 16 7 4.3882 -6.3786 2.9962 17 6 3.7047 -7.3985 3.7955 18 6 4.7424 -8.2690 4.5069 19 6 5.6198 -9.1007 3.6071 20 1 6.5900 -8.7323 3.3082 21 6 5.1862 -10.3345 3.1703 22 7 4.0480 -10.8251 3.6098 23 14 6.2158 -11.3093 1.9539 24 1 7.4426 -10.5430 1.6180 25 1 6.5959 -12.6111 2.5587 26 1 5.4274 -11.5488 0.7184 27 6 5.3677 -7.7171 5.7896 28 6 4.3559 -8.8635 5.8627 29 6 2.1982 -1.1972 -0.0048 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1324 0.0004 34 1 4.5166 2.8166 -1.0264 35 1 3.7448 3.2617 0.5145 36 1 5.2862 2.3716 0.5156 37 1 5.3517 -0.0003 0.0024 38 1 4.9171 -4.0139 -1.4177 39 1 3.3548 -3.2379 -1.7702 40 1 4.8731 -2.3616 -2.0787 41 1 2.7138 -3.3589 1.0746 42 1 5.3558 -6.3838 2.9281 43 1 3.0932 -8.0218 3.1432 44 1 3.0684 -6.9136 4.5359 45 1 3.7778 -11.7225 3.3598 46 1 6.4137 -7.9556 5.9827 47 1 5.0394 -6.7340 6.1269 48 1 3.3624 -8.6340 6.2481 49 1 4.7358 -9.8563 6.1036 50 1 1.6581 -2.1325 -0.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323277200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:54 Heat of formation + Delta-G solvation = -55.582964 kcal Electronic energy + Delta-G solvation = -29370.011355 eV Core-core repulsion = 25361.491707 eV Total energy + Delta-G solvation = -4008.519649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84410 -40.72396 -39.65920 -38.47717 -37.08519 -35.09867 -34.41589 -33.97323 -33.20525 -30.76159 -28.75915 -28.14018 -27.64827 -27.42923 -25.74472 -24.06296 -22.92166 -21.98736 -21.46248 -21.22475 -20.95556 -19.56570 -18.11603 -17.92738 -17.40664 -17.04595 -16.82569 -16.60142 -16.28025 -16.12103 -15.71841 -15.39583 -15.16671 -14.95581 -14.78222 -14.45407 -14.36989 -14.00194 -13.96722 -13.84962 -13.67517 -13.49900 -13.34595 -13.24393 -12.95485 -12.87376 -12.83972 -12.77385 -12.56188 -12.36284 -12.30080 -12.02149 -11.94383 -11.76975 -11.42987 -10.97951 -10.78872 -10.47446 -10.43823 -10.14118 -9.97477 -9.59870 -9.48260 -8.11604 -6.25126 0.29570 0.36452 0.41497 1.35565 1.38882 1.43658 1.52882 2.13764 2.40894 2.63259 2.78613 3.15942 3.39009 3.46025 3.58735 3.81395 3.91000 4.15111 4.18739 4.19166 4.24089 4.45746 4.48611 4.50620 4.52775 4.61660 4.65932 4.67968 4.71078 4.79319 4.82192 4.86790 4.90840 4.94836 5.01589 5.06898 5.14163 5.16360 5.23395 5.27817 5.32918 5.36317 5.51590 5.55941 5.60882 5.67737 5.68892 5.76717 5.95609 6.08488 6.34957 6.41998 6.73276 6.82262 6.97044 7.44618 8.95190 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.002183 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.001067 B =12824.262286 C =13209.409456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.085 4.085 5 C -0.113 4.113 6 C -0.124 4.124 7 C -0.091 4.091 8 C 0.183 3.817 9 H 0.095 0.905 10 C -0.155 4.155 11 N -0.685 5.685 12 C 0.517 3.483 13 O -0.536 6.536 14 C 0.496 3.504 15 O -0.556 6.556 16 N -0.668 5.668 17 C 0.175 3.825 18 C -0.004 4.004 19 C -0.506 4.506 20 H 0.058 0.942 21 C 0.028 3.972 22 N -0.903 5.903 23 Si 0.945 3.055 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.286 1.286 27 C -0.181 4.181 28 C -0.145 4.145 29 C -0.133 4.133 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.415 0.585 42 H 0.415 0.585 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.260 0.740 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.478 26.307 -8.836 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.085 4.085 5 C -0.170 4.170 6 C -0.142 4.142 7 C -0.092 4.092 8 C 0.080 3.920 9 H 0.113 0.887 10 C -0.213 4.213 11 N -0.340 5.340 12 C 0.297 3.703 13 O -0.413 6.413 14 C 0.276 3.724 15 O -0.436 6.436 16 N -0.318 5.318 17 C 0.051 3.949 18 C -0.004 4.004 19 C -0.544 4.544 20 H 0.076 0.924 21 C -0.174 4.174 22 N -0.541 5.541 23 Si 0.772 3.228 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.213 1.213 27 C -0.218 4.218 28 C -0.183 4.183 29 C -0.151 4.151 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.158 0.842 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.152 0.848 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.254 0.746 42 H 0.252 0.748 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.619 26.104 -8.959 27.835 hybrid contribution 0.331 -1.323 -0.438 1.433 sum -3.288 24.781 -9.398 26.706 Atomic orbital electron populations 1.20856 0.89703 1.03551 1.03141 1.20154 0.97258 0.92768 0.98334 1.21231 0.93733 0.98206 1.01218 1.20190 0.94158 0.95906 0.98246 1.20841 1.00024 0.92916 1.03212 1.21035 1.00498 0.91126 1.01531 1.19755 0.94017 0.93738 1.01675 1.19978 0.96402 0.85097 0.90530 0.88740 1.22140 1.03040 1.01545 0.94541 1.45941 1.14217 1.27026 1.46774 1.20002 0.86672 0.82391 0.81209 1.90747 1.15517 1.73215 1.61828 1.20326 0.87202 0.82917 0.81933 1.90694 1.14865 1.73531 1.64467 1.45796 1.11952 1.27105 1.46928 1.20839 0.94083 0.87039 0.92921 1.19079 0.96878 0.97297 0.87173 1.20677 1.02083 1.02364 1.29249 0.92402 1.25636 0.95753 0.98669 0.97293 1.70087 1.22266 1.16348 1.45385 0.85702 0.79173 0.78736 0.79237 1.19123 1.20640 1.21252 1.23021 0.97938 0.97056 1.03776 1.22398 0.97652 0.96324 1.01966 1.20942 0.93410 0.98454 1.02280 0.90199 0.91428 0.90327 0.84186 0.90120 0.90501 0.91022 0.84827 0.93062 0.91568 0.89343 0.74625 0.74831 0.94106 0.92642 0.93060 0.89884 0.89233 0.90643 0.91559 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 10.01 71.24 0.71 -0.64 16 2 C -0.09 -1.35 5.88 -19.87 -0.12 -1.47 16 3 C -0.13 -1.81 9.36 22.27 0.21 -1.60 16 4 C -0.08 -1.24 5.88 -19.87 -0.12 -1.36 16 5 C -0.11 -1.06 10.01 71.23 0.71 -0.35 16 6 C -0.12 -2.07 9.33 22.27 0.21 -1.86 16 7 C -0.09 -1.72 4.95 -19.86 -0.10 -1.82 16 8 C 0.18 3.93 2.78 44.24 0.12 4.06 16 9 H 0.09 2.16 7.44 -2.39 -0.02 2.15 16 10 C -0.15 -3.05 9.46 71.98 0.68 -2.37 16 11 N -0.69 -17.66 5.02 -447.45 -2.25 -19.91 16 12 C 0.52 16.93 7.85 87.27 0.69 17.61 16 13 O -0.54 -19.45 16.16 -3.23 -0.05 -19.50 16 14 C 0.50 18.69 7.88 87.27 0.69 19.37 16 15 O -0.56 -22.54 16.47 -3.24 -0.05 -22.60 16 16 N -0.67 -26.87 5.46 -464.43 -2.54 -29.41 16 17 C 0.17 7.82 5.53 86.38 0.48 8.30 16 18 C 0.00 -0.17 1.47 -52.93 -0.08 -0.24 16 19 C -0.51 -26.37 8.59 25.60 0.22 -26.15 16 20 H 0.06 3.00 7.82 -2.91 -0.02 2.98 16 21 C 0.03 1.47 5.43 84.65 0.46 1.93 16 22 N -0.90 -50.51 12.65 21.45 0.27 -50.24 16 23 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 27 C -0.18 -7.29 9.96 30.62 0.30 -6.99 16 28 C -0.15 -6.55 9.14 30.62 0.28 -6.27 16 29 C -0.13 -2.41 8.71 22.27 0.19 -2.22 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 32 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 33 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.57 8.09 -2.38 -0.02 0.55 16 36 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 37 H 0.13 1.89 8.04 -2.91 -0.02 1.86 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.42 10.01 6.37 -92.71 -0.59 9.41 16 42 H 0.42 16.49 7.84 -92.71 -0.73 15.76 16 43 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 45 H 0.26 13.98 8.32 -92.70 -0.77 13.21 16 46 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 47 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.08 3.18 8.14 -2.38 -0.02 3.17 16 49 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 50 H 0.12 2.13 6.93 -2.91 -0.02 2.11 16 Total: -1.00 -62.68 421.47 2.59 -60.09 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.37 Total: 38.58 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.54 Total: -2.08 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -4.51 Total: -99.56 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -0.11 Total: -42.10 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -62.68 2.59 -60.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323277200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.507 kcal (2) G-P(sol) polarization free energy of solvation -62.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds