Wall clock time and date at job start Wed Apr 1 2020 04:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38237 * 120.00098 * 2 1 4 4 C 1.38238 * 119.99870 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99516 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99987 * 359.97095 * 4 3 2 7 7 C 1.38234 * 119.99949 * 359.97438 * 6 4 3 8 8 C 1.50699 * 119.99503 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47986 * 339.99643 * 8 7 6 10 10 C 1.53002 * 109.47346 * 99.99982 * 8 7 6 11 11 N 1.46509 * 109.46830 * 219.99546 * 8 7 6 12 12 C 1.34783 * 119.99682 * 155.00300 * 11 8 7 13 13 O 1.21348 * 119.99889 * 359.97438 * 12 11 8 14 14 C 1.49449 * 119.99577 * 180.02562 * 12 11 8 15 15 O 1.21347 * 120.00465 * 355.00731 * 14 12 11 16 16 N 1.34779 * 119.99801 * 175.00503 * 14 12 11 17 17 C 1.46494 * 119.99847 * 185.77892 * 16 14 12 18 18 C 1.53000 * 109.46960 * 183.69678 * 17 16 14 19 19 C 1.50698 * 115.55051 * 306.41534 * 18 17 16 20 20 H 1.08001 * 120.00066 * 145.11419 * 19 18 17 21 21 C 1.37873 * 120.00130 * 325.11230 * 19 18 17 22 22 N 1.31513 * 119.99761 * 349.44412 * 21 19 18 23 23 Si 1.86801 * 120.00164 * 169.44631 * 21 19 18 24 24 H 1.48492 * 109.46962 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47248 * 120.00222 * 23 21 19 26 26 H 1.48500 * 109.46609 * 239.99963 * 23 21 19 27 27 C 1.53004 * 117.49992 * 160.74369 * 18 17 16 28 28 C 1.53011 * 117.49965 * 92.08847 * 18 17 16 29 29 C 1.38232 * 119.99934 * 180.15754 * 2 1 3 30 30 H 1.09000 * 109.47226 * 90.00306 * 1 2 3 31 31 H 1.08999 * 109.47626 * 210.00769 * 1 2 3 32 32 H 1.08999 * 109.47211 * 330.00780 * 1 2 3 33 33 H 1.08002 * 119.99955 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47243 * 269.97418 * 5 4 3 35 35 H 1.08995 * 109.47408 * 29.97771 * 5 4 3 36 36 H 1.09005 * 109.46786 * 149.98093 * 5 4 3 37 37 H 1.07999 * 119.99791 * 179.97438 * 6 4 3 38 38 H 1.09003 * 109.47363 * 179.97438 * 10 8 7 39 39 H 1.09002 * 109.46922 * 299.99431 * 10 8 7 40 40 H 1.08999 * 109.46781 * 59.99752 * 10 8 7 41 41 H 0.96995 * 120.00170 * 335.00028 * 11 8 7 42 42 H 0.97001 * 119.99934 * 5.78557 * 16 14 12 43 43 H 1.09005 * 109.47333 * 303.69382 * 17 16 14 44 44 H 1.08996 * 109.47497 * 63.69933 * 17 16 14 45 45 H 0.96998 * 120.00147 * 185.02645 * 22 21 19 46 46 H 1.09000 * 117.49675 * 0.02562 * 27 18 17 47 47 H 1.09002 * 117.49826 * 145.02215 * 27 18 17 48 48 H 1.09000 * 117.49553 * 214.98236 * 28 18 17 49 49 H 1.08995 * 117.49328 * 359.97438 * 28 18 17 50 50 H 1.08001 * 120.00453 * 0.07021 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0017 7 6 3.5804 -1.1971 0.0028 8 6 4.3340 -2.5022 0.0046 9 1 5.3521 -2.3346 -0.3467 10 6 4.3715 -3.0675 1.4259 11 7 3.6620 -3.4553 -0.8823 12 6 4.3603 -4.4640 -1.4404 13 8 5.5455 -4.5825 -1.2087 14 6 3.6750 -5.4358 -2.3457 15 8 2.4740 -5.3719 -2.5069 16 7 4.3909 -6.3833 -2.9830 17 6 3.7420 -7.2542 -3.9661 18 6 4.7468 -8.2926 -4.4693 19 6 6.0418 -7.7379 -5.0044 20 1 6.9637 -8.2806 -4.8566 21 6 6.0496 -6.5376 -5.6828 22 7 4.9151 -5.9797 -6.0451 23 14 7.6715 -5.7040 -6.0875 24 1 8.7939 -6.5294 -5.5738 25 1 7.7984 -5.5561 -7.5596 26 1 7.7114 -4.3633 -5.4501 27 6 4.1879 -9.5510 -5.1366 28 6 4.8022 -9.6349 -3.7370 29 6 2.1981 -1.1971 -0.0033 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6582 2.1325 -0.0004 34 1 4.5164 2.8160 -1.0278 35 1 3.7446 3.2623 0.5127 36 1 5.2861 2.3723 0.5146 37 1 5.3516 0.0000 0.0017 38 1 4.9162 -4.0117 1.4272 39 1 4.8715 -2.3585 2.0858 40 1 3.3534 -3.2353 1.7772 41 1 2.7147 -3.3603 -1.0678 42 1 5.3359 -6.4885 -2.7908 43 1 2.8974 -7.7620 -3.5002 44 1 3.3881 -6.6550 -4.8049 45 1 4.9215 -5.1740 -6.5851 46 1 3.1045 -9.6388 -5.2174 47 1 4.7572 -9.9778 -5.9624 48 1 5.7753 -10.1169 -3.6426 49 1 4.1231 -9.7780 -2.8966 50 1 1.6582 -2.1325 -0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323277201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:59 Heat of formation + Delta-G solvation = -36.021867 kcal Electronic energy + Delta-G solvation = -29886.284883 eV Core-core repulsion = 25878.613467 eV Total energy + Delta-G solvation = -4007.671416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.48090 -39.63127 -38.06720 -36.67930 -35.91055 -33.76379 -33.24964 -32.23159 -32.06215 -29.84517 -27.52977 -26.98825 -26.76769 -25.56973 -24.48011 -22.77426 -21.25708 -21.14831 -20.22751 -19.65447 -19.36687 -18.03396 -16.73503 -16.48688 -16.19004 -15.70083 -15.37149 -15.14987 -14.76341 -14.65657 -14.36331 -14.25389 -13.94382 -13.67909 -13.45675 -13.42385 -13.19813 -13.15892 -12.81177 -12.79095 -12.62184 -12.35172 -12.22058 -11.84475 -11.78675 -11.57124 -11.52461 -11.23396 -11.10799 -11.02154 -10.94996 -10.79457 -10.51309 -10.29209 -9.65305 -9.20833 -9.18308 -8.99729 -8.87376 -8.79421 -8.75792 -8.32669 -8.01077 -6.10959 -4.20065 1.09700 1.15211 1.99340 2.84987 3.23259 3.34041 3.36566 3.49621 3.82592 4.24209 4.31067 4.32836 4.53742 4.55152 4.88769 4.90572 5.02086 5.09621 5.11164 5.16777 5.24611 5.28573 5.31843 5.33530 5.40313 5.47362 5.54556 5.58943 5.62486 5.75419 5.88352 5.96227 5.96507 6.06087 6.23773 6.25550 6.32384 6.37095 6.48939 6.50942 6.55905 6.65320 6.79197 6.83547 7.00452 7.20562 7.27372 7.43125 7.48739 7.86403 8.03918 8.27502 8.37858 8.77670 8.81434 9.41644 10.86500 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013256 B = 0.002682 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.775114 B =10437.088324 C =11216.765332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.122 4.122 4 C -0.081 4.081 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.081 4.081 8 C 0.181 3.819 9 H 0.099 0.901 10 C -0.157 4.157 11 N -0.704 5.704 12 C 0.511 3.489 13 O -0.520 6.520 14 C 0.495 3.505 15 O -0.548 6.548 16 N -0.649 5.649 17 C 0.158 3.842 18 C 0.035 3.965 19 C -0.498 4.498 20 H 0.064 0.936 21 C 0.075 3.925 22 N -0.871 5.871 23 Si 0.891 3.109 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.281 1.281 27 C -0.193 4.193 28 C -0.211 4.211 29 C -0.118 4.118 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.410 0.590 42 H 0.413 0.587 43 H 0.034 0.966 44 H 0.115 0.885 45 H 0.263 0.737 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 14.299 14.003 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.078 4.078 3 C -0.140 4.140 4 C -0.081 4.081 5 C -0.171 4.171 6 C -0.132 4.132 7 C -0.081 4.081 8 C 0.077 3.923 9 H 0.117 0.883 10 C -0.215 4.215 11 N -0.359 5.359 12 C 0.292 3.708 13 O -0.395 6.395 14 C 0.274 3.726 15 O -0.428 6.428 16 N -0.298 5.298 17 C 0.036 3.964 18 C 0.034 3.966 19 C -0.535 4.535 20 H 0.082 0.918 21 C -0.129 4.129 22 N -0.507 5.507 23 Si 0.719 3.281 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.206 1.206 27 C -0.232 4.232 28 C -0.248 4.248 29 C -0.136 4.136 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.142 0.858 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.247 0.753 42 H 0.249 0.751 43 H 0.053 0.947 44 H 0.132 0.868 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.624 14.435 13.968 20.859 hybrid contribution 0.829 0.386 -0.409 1.002 sum -4.795 14.821 13.559 20.652 Atomic orbital electron populations 1.20811 0.91001 1.02786 1.02644 1.19873 0.96143 0.92885 0.98872 1.20914 0.93486 0.97529 1.02058 1.19867 0.93818 0.95189 0.99200 1.20793 0.99885 0.93927 1.02483 1.20850 0.99846 0.91126 1.01365 1.19859 0.93877 0.94264 1.00137 1.19847 0.96799 0.84978 0.90678 0.88288 1.22164 1.02636 1.01950 0.94791 1.45910 1.14023 1.28135 1.47826 1.20619 0.87015 0.82349 0.80793 1.90733 1.14973 1.73157 1.60602 1.19759 0.87307 0.83012 0.82550 1.90675 1.13985 1.73180 1.64987 1.45700 1.14336 1.31402 1.38331 1.21215 0.92695 0.91743 0.90778 1.19175 0.95797 0.84668 0.96950 1.20544 0.91681 1.04816 1.36497 0.91759 1.24972 0.96421 0.96589 0.94934 1.69829 1.25053 1.20912 1.34902 0.86532 0.83842 0.79791 0.77983 1.19490 1.20964 1.20645 1.22925 0.97882 1.07626 0.94750 1.22978 1.00907 1.06424 0.94521 1.20828 0.93409 0.97866 1.01510 0.90888 0.91339 0.91595 0.86145 0.91055 0.91579 0.91442 0.85796 0.91320 0.91345 0.92114 0.75256 0.75053 0.94748 0.86769 0.92639 0.91425 0.90073 0.90450 0.91271 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.08 -0.76 5.88 -104.63 -0.62 -1.38 16 3 C -0.12 -1.14 9.36 -39.58 -0.37 -1.51 16 4 C -0.08 -0.77 5.88 -104.63 -0.62 -1.39 16 5 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 6 C -0.11 -1.20 9.33 -39.59 -0.37 -1.57 16 7 C -0.08 -0.92 4.96 -104.63 -0.52 -1.44 16 8 C 0.18 2.28 2.78 -69.08 -0.19 2.08 16 9 H 0.10 1.35 7.44 -51.93 -0.39 0.96 16 10 C -0.16 -1.72 9.46 37.16 0.35 -1.37 16 11 N -0.70 -10.45 5.02 -55.36 -0.28 -10.73 16 12 C 0.51 9.47 7.85 -11.58 -0.09 9.38 16 13 O -0.52 -10.53 16.15 5.50 0.09 -10.44 16 14 C 0.49 10.38 7.88 -11.58 -0.09 10.29 16 15 O -0.55 -12.13 16.48 5.50 0.09 -12.04 16 16 N -0.65 -14.43 5.27 -60.73 -0.32 -14.75 16 17 C 0.16 3.70 4.75 -4.04 -0.02 3.68 16 18 C 0.03 0.82 2.00 -155.65 -0.31 0.51 16 19 C -0.50 -12.81 8.27 -34.44 -0.28 -13.09 16 20 H 0.06 1.66 7.84 -52.49 -0.41 1.25 16 21 C 0.08 1.96 5.13 -17.82 -0.09 1.86 16 22 N -0.87 -23.29 10.75 55.43 0.60 -22.70 16 23 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C -0.19 -4.20 9.96 -26.69 -0.27 -4.46 16 28 C -0.21 -4.40 9.92 -26.69 -0.26 -4.66 16 29 C -0.12 -1.27 8.72 -39.59 -0.35 -1.62 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.12 1.15 8.04 -52.49 -0.42 0.73 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.41 5.74 6.34 -40.82 -0.26 5.48 16 42 H 0.41 9.31 7.41 -40.82 -0.30 9.01 16 43 H 0.03 0.77 8.06 -51.93 -0.42 0.36 16 44 H 0.11 3.00 6.04 -51.93 -0.31 2.68 16 45 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 47 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 48 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 49 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.12 1.23 6.90 -52.49 -0.36 0.87 16 LS Contribution 416.73 15.07 6.28 6.28 Total: -1.00 -28.97 416.73 -9.86 -38.83 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -7.92 Total: 15.55 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -3.37 Total: -5.64 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.00 Total: -48.17 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.18 Total: -22.48 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -28.97 -9.86 -38.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323277201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.808 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds