Wall clock time and date at job start Wed Apr 1 2020 04:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38253 * 119.99892 * 2 1 4 4 C 1.38218 * 119.99756 * 180.27630 * 3 2 1 5 5 C 1.38253 * 120.00050 * 359.74488 * 4 3 2 6 6 C 1.38211 * 120.00023 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99975 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47505 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47548 * 60.01967 * 7 6 5 10 10 C 1.53006 * 109.47200 * 300.01760 * 7 6 5 11 11 N 1.46495 * 109.47116 * 185.00174 * 10 7 6 12 12 C 1.34783 * 119.99447 * 180.02562 * 11 10 7 13 13 O 1.21338 * 120.00449 * 0.02562 * 12 11 10 14 14 C 1.49457 * 119.99408 * 179.97438 * 12 11 10 15 15 O 1.21347 * 120.00335 * 354.49403 * 14 12 11 16 16 N 1.34780 * 119.99446 * 174.48555 * 14 12 11 17 17 C 1.46495 * 119.99814 * 185.59326 * 16 14 12 18 18 C 1.53002 * 109.47437 * 185.19817 * 17 16 14 19 19 C 1.50700 * 115.54683 * 57.83722 * 18 17 16 20 20 H 1.08000 * 120.00055 * 264.65206 * 19 18 17 21 21 C 1.37879 * 120.00121 * 84.65764 * 19 18 17 22 22 N 1.31515 * 119.99924 * 1.96609 * 21 19 18 23 23 Si 1.86793 * 120.00020 * 181.96675 * 21 19 18 24 24 H 1.48504 * 109.47139 * 89.99837 * 23 21 19 25 25 H 1.48496 * 109.47283 * 209.99871 * 23 21 19 26 26 H 1.48502 * 109.47450 * 329.99915 * 23 21 19 27 27 C 1.52997 * 117.49947 * 272.17112 * 18 17 16 28 28 C 1.52998 * 117.50088 * 203.51100 * 18 17 16 29 29 C 1.38215 * 119.99751 * 179.76139 * 2 1 3 30 30 H 1.08995 * 109.47315 * 270.23730 * 1 2 3 31 31 H 1.08993 * 109.47075 * 30.24014 * 1 2 3 32 32 H 1.09003 * 109.46738 * 150.23482 * 1 2 3 33 33 H 1.07998 * 120.00270 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.99892 * 179.72011 * 4 3 2 35 35 H 1.08000 * 120.00282 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47414 * 300.00279 * 9 7 6 37 37 H 1.09004 * 109.47379 * 60.00028 * 9 7 6 38 38 H 1.09007 * 109.47440 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.47082 * 305.00231 * 10 7 6 40 40 H 1.09000 * 109.46527 * 64.99978 * 10 7 6 41 41 H 0.96998 * 120.00683 * 0.02562 * 11 10 7 42 42 H 0.96996 * 120.00213 * 5.60161 * 16 14 12 43 43 H 1.09002 * 109.47215 * 305.20248 * 17 16 14 44 44 H 1.09005 * 109.47268 * 65.19680 * 17 16 14 45 45 H 0.96996 * 120.00015 * 185.01902 * 22 21 19 46 46 H 1.09010 * 117.49571 * 359.97438 * 27 18 17 47 47 H 1.08998 * 117.49851 * 145.01708 * 27 18 17 48 48 H 1.09000 * 117.49567 * 214.98224 * 28 18 17 49 49 H 1.09003 * 117.50016 * 359.97101 * 28 18 17 50 50 H 1.07996 * 120.00487 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1970 -0.0003 7 6 4.3341 -2.5020 -0.0014 8 1 3.6259 -3.3306 0.0033 9 6 5.2196 -2.5809 1.2438 10 6 5.2079 -2.5855 -1.2546 11 7 5.8481 -3.9017 -1.3169 12 6 6.6696 -4.2036 -2.3418 13 8 6.8794 -3.3851 -3.2127 14 6 7.3232 -5.5462 -2.4050 15 8 7.1948 -6.3275 -1.4854 16 7 8.0550 -5.8893 -3.4835 17 6 8.5934 -7.2466 -3.6018 18 6 9.4856 -7.3352 -4.8416 19 6 10.6426 -6.3703 -4.8800 20 1 10.5445 -5.4301 -5.4023 21 6 11.8264 -6.6879 -4.2485 22 7 11.9591 -7.8491 -3.6456 23 14 13.2416 -5.4688 -4.2493 24 1 13.1335 -4.5840 -3.0615 25 1 14.5299 -6.2058 -4.2020 26 1 13.1866 -4.6471 -5.4851 27 6 8.8149 -7.6873 -6.1709 28 6 9.6976 -8.7176 -5.4620 29 6 2.1980 -1.1970 0.0050 30 1 -0.3634 0.0043 1.0276 31 1 -0.3633 0.8878 -0.5175 32 1 -0.3633 -0.8921 -0.5102 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1326 -0.0103 35 1 5.3517 -0.0001 -0.0111 36 1 5.9279 -1.7524 1.2390 37 1 4.5971 -2.5215 2.1367 38 1 5.7649 -3.5247 1.2428 39 1 4.5885 -2.4405 -2.1398 40 1 5.9734 -1.8105 -1.2159 41 1 5.6807 -4.5559 -0.6206 42 1 8.2254 -5.2375 -4.1813 43 1 9.1801 -7.4834 -2.7142 44 1 7.7716 -7.9567 -3.6940 45 1 12.7636 -8.0438 -3.1399 46 1 7.7380 -7.8562 -6.1620 47 1 9.2107 -7.2214 -7.0732 48 1 10.6738 -8.9290 -5.8983 49 1 9.2019 -9.5640 -4.9867 50 1 1.6581 -2.1323 0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323825460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:21 Heat of formation + Delta-G solvation = -40.698484 kcal Electronic energy + Delta-G solvation = -28923.191442 eV Core-core repulsion = 24915.317232 eV Total energy + Delta-G solvation = -4007.874209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.41060 -39.85168 -38.23369 -36.71236 -36.52337 -33.95693 -33.15515 -32.45703 -31.97693 -30.01983 -27.60209 -27.19747 -26.52986 -25.38741 -23.83627 -22.44696 -22.34346 -21.16397 -20.26738 -19.72154 -19.40691 -18.00895 -17.02852 -16.51671 -16.10451 -16.01957 -15.65293 -15.22563 -15.02990 -14.74553 -14.64661 -14.49439 -14.14419 -13.84325 -13.78591 -13.70004 -13.36539 -13.05988 -13.02271 -12.72622 -12.59865 -12.49796 -12.20792 -11.91949 -11.66492 -11.61398 -11.52043 -11.31524 -11.10870 -11.03484 -10.98872 -10.92155 -10.53029 -10.25963 -9.63359 -9.23931 -9.21971 -9.10213 -9.07139 -8.88565 -8.52511 -8.42168 -8.12266 -6.09323 -4.18166 1.02214 1.08581 1.81336 2.69664 3.27663 3.34866 3.37604 3.42900 3.62626 4.02672 4.30612 4.36321 4.40291 4.56105 4.64760 4.74585 4.83304 4.92262 4.95340 5.06284 5.15368 5.19767 5.22797 5.26545 5.33065 5.41763 5.44635 5.52398 5.57850 5.72831 5.76134 5.82327 5.91348 5.96487 6.17671 6.23841 6.26819 6.27581 6.32485 6.40025 6.45182 6.67145 6.70450 6.75514 7.01654 7.07584 7.22992 7.34229 7.48489 7.81039 7.87239 8.17097 8.30916 8.55999 8.83900 9.49649 10.98740 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.001955 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.238309 B =14322.299251 C =14914.944001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.124 4.124 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.070 4.070 7 C -0.064 4.064 8 H 0.087 0.913 9 C -0.148 4.148 10 C 0.127 3.873 11 N -0.707 5.707 12 C 0.508 3.492 13 O -0.519 6.519 14 C 0.495 3.505 15 O -0.541 6.541 16 N -0.664 5.664 17 C 0.159 3.841 18 C 0.021 3.979 19 C -0.498 4.498 20 H 0.062 0.938 21 C 0.073 3.927 22 N -0.875 5.875 23 Si 0.890 3.110 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.211 4.211 28 C -0.141 4.141 29 C -0.114 4.114 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.412 0.588 42 H 0.414 0.586 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.261 0.739 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.065 0.935 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.420 13.927 9.374 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.132 4.132 5 C -0.135 4.135 6 C -0.070 4.070 7 C -0.082 4.082 8 H 0.106 0.894 9 C -0.205 4.205 10 C 0.003 3.997 11 N -0.362 5.362 12 C 0.289 3.711 13 O -0.394 6.394 14 C 0.275 3.725 15 O -0.420 6.420 16 N -0.313 5.313 17 C 0.037 3.963 18 C 0.020 3.980 19 C -0.536 4.536 20 H 0.080 0.920 21 C -0.131 4.131 22 N -0.511 5.511 23 Si 0.717 3.283 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.248 4.248 28 C -0.179 4.179 29 C -0.132 4.132 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.248 0.752 42 H 0.250 0.750 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.083 0.917 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.184 13.794 9.403 26.194 hybrid contribution 0.901 0.649 0.130 1.118 sum -19.283 14.443 9.533 25.910 Atomic orbital electron populations 1.20796 0.91206 1.02850 1.02307 1.19909 0.96065 0.93134 0.99557 1.21040 0.94321 0.97478 1.01374 1.21139 0.94280 0.98050 0.99703 1.21041 1.00099 0.91919 1.00425 1.19624 0.93444 0.94211 0.99758 1.20374 0.97109 0.95511 0.95239 0.89426 1.21905 0.99385 1.02779 0.96444 1.21477 0.96001 0.84562 0.97648 1.45743 1.46962 1.17063 1.26416 1.20499 0.79830 0.88665 0.82067 1.90751 1.60756 1.49915 1.37935 1.19905 0.81552 0.87080 0.83988 1.90709 1.62345 1.52302 1.36616 1.45822 1.48375 1.15874 1.21242 1.21163 0.94783 0.79333 1.01052 1.19042 0.95142 0.96445 0.87366 1.20363 0.95173 1.02737 1.35317 0.92031 1.24982 0.98068 0.94787 0.95229 1.69986 1.28192 1.20705 1.32233 0.86625 0.81792 0.81228 0.78631 1.20601 1.21214 1.19736 1.23064 0.96187 1.07056 0.98473 1.22475 0.99356 0.92348 1.03768 1.20950 0.93337 0.97695 1.01210 0.91199 0.91557 0.91476 0.86240 0.85993 0.85893 0.92015 0.92038 0.91687 0.90879 0.90791 0.75190 0.75002 0.90368 0.93927 0.92874 0.91591 0.90207 0.89481 0.91693 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.09 -0.67 5.88 -104.62 -0.62 -1.28 16 3 C -0.12 -0.94 9.70 -39.58 -0.38 -1.33 16 4 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 5 C -0.12 -0.99 8.76 -39.59 -0.35 -1.34 16 6 C -0.07 -0.59 4.78 -104.62 -0.50 -1.09 16 7 C -0.06 -0.51 2.60 -91.77 -0.24 -0.75 16 8 H 0.09 0.63 7.88 -51.93 -0.41 0.23 16 9 C -0.15 -1.14 8.88 37.15 0.33 -0.81 16 10 C 0.13 1.33 4.80 -4.04 -0.02 1.31 16 11 N -0.71 -8.88 5.28 -60.73 -0.32 -9.20 16 12 C 0.51 8.41 7.89 -11.58 -0.09 8.31 16 13 O -0.52 -9.65 16.49 5.51 0.09 -9.56 16 14 C 0.50 9.42 7.88 -11.58 -0.09 9.33 16 15 O -0.54 -11.09 16.46 5.50 0.09 -11.00 16 16 N -0.66 -13.45 5.37 -60.73 -0.33 -13.78 16 17 C 0.16 3.53 5.57 -4.04 -0.02 3.51 16 18 C 0.02 0.49 1.51 -155.66 -0.23 0.25 16 19 C -0.50 -12.94 8.38 -34.44 -0.29 -13.22 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 22 N -0.88 -24.17 12.72 55.43 0.71 -23.46 16 23 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 C -0.21 -4.37 9.94 -26.70 -0.27 -4.64 16 28 C -0.14 -3.19 9.26 -26.70 -0.25 -3.43 16 29 C -0.11 -0.92 9.33 -39.58 -0.37 -1.29 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 32 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.96 7.16 -52.49 -0.38 0.58 16 36 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.52 7.18 -51.92 -0.37 0.15 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.81 7.57 -51.93 -0.39 0.42 16 41 H 0.41 4.65 7.14 -40.82 -0.29 4.36 16 42 H 0.41 8.31 7.73 -40.82 -0.32 7.99 16 43 H 0.08 1.96 8.09 -51.93 -0.42 1.54 16 44 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 45 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 46 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 47 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 48 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 49 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 50 H 0.12 0.82 7.95 -52.49 -0.42 0.40 16 LS Contribution 419.43 15.07 6.32 6.32 Total: -1.00 -30.04 419.43 -9.97 -40.01 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -7.99 Total: 10.97 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -3.52 Total: -6.18 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.06 Total: -46.44 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.18 Total: -20.56 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -30.04 -9.97 -40.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323825460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.685 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds