Wall clock time and date at job start Wed Apr 1 2020 04:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38253 * 119.99892 * 2 1 4 4 C 1.38218 * 119.99756 * 180.27630 * 3 2 1 5 5 C 1.38253 * 120.00050 * 359.74488 * 4 3 2 6 6 C 1.38211 * 120.00023 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99975 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47505 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47548 * 60.01967 * 7 6 5 10 10 C 1.53006 * 109.47200 * 300.01760 * 7 6 5 11 11 N 1.46495 * 109.47116 * 185.00174 * 10 7 6 12 12 C 1.34783 * 119.99447 * 180.02562 * 11 10 7 13 13 O 1.21338 * 120.00449 * 0.02562 * 12 11 10 14 14 C 1.49457 * 119.99408 * 179.97438 * 12 11 10 15 15 O 1.21347 * 120.00335 * 354.49403 * 14 12 11 16 16 N 1.34780 * 119.99446 * 174.48555 * 14 12 11 17 17 C 1.46495 * 119.99814 * 185.59326 * 16 14 12 18 18 C 1.53002 * 109.47437 * 185.19817 * 17 16 14 19 19 C 1.50700 * 115.54683 * 57.83722 * 18 17 16 20 20 H 1.08000 * 120.00055 * 264.65206 * 19 18 17 21 21 C 1.37879 * 120.00121 * 84.65764 * 19 18 17 22 22 N 1.31515 * 119.99924 * 1.96609 * 21 19 18 23 23 Si 1.86793 * 120.00020 * 181.96675 * 21 19 18 24 24 H 1.48504 * 109.47139 * 89.99837 * 23 21 19 25 25 H 1.48496 * 109.47283 * 209.99871 * 23 21 19 26 26 H 1.48502 * 109.47450 * 329.99915 * 23 21 19 27 27 C 1.52997 * 117.49947 * 272.17112 * 18 17 16 28 28 C 1.52998 * 117.50088 * 203.51100 * 18 17 16 29 29 C 1.38215 * 119.99751 * 179.76139 * 2 1 3 30 30 H 1.08995 * 109.47315 * 270.23730 * 1 2 3 31 31 H 1.08993 * 109.47075 * 30.24014 * 1 2 3 32 32 H 1.09003 * 109.46738 * 150.23482 * 1 2 3 33 33 H 1.07998 * 120.00270 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.99892 * 179.72011 * 4 3 2 35 35 H 1.08000 * 120.00282 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47414 * 300.00279 * 9 7 6 37 37 H 1.09004 * 109.47379 * 60.00028 * 9 7 6 38 38 H 1.09007 * 109.47440 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.47082 * 305.00231 * 10 7 6 40 40 H 1.09000 * 109.46527 * 64.99978 * 10 7 6 41 41 H 0.96998 * 120.00683 * 0.02562 * 11 10 7 42 42 H 0.96996 * 120.00213 * 5.60161 * 16 14 12 43 43 H 1.09002 * 109.47215 * 305.20248 * 17 16 14 44 44 H 1.09005 * 109.47268 * 65.19680 * 17 16 14 45 45 H 0.96996 * 120.00015 * 185.01902 * 22 21 19 46 46 H 1.09010 * 117.49571 * 359.97438 * 27 18 17 47 47 H 1.08998 * 117.49851 * 145.01708 * 27 18 17 48 48 H 1.09000 * 117.49567 * 214.98224 * 28 18 17 49 49 H 1.09003 * 117.50016 * 359.97101 * 28 18 17 50 50 H 1.07996 * 120.00487 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1970 -0.0003 7 6 4.3341 -2.5020 -0.0014 8 1 3.6259 -3.3306 0.0033 9 6 5.2196 -2.5809 1.2438 10 6 5.2079 -2.5855 -1.2546 11 7 5.8481 -3.9017 -1.3169 12 6 6.6696 -4.2036 -2.3418 13 8 6.8794 -3.3851 -3.2127 14 6 7.3232 -5.5462 -2.4050 15 8 7.1948 -6.3275 -1.4854 16 7 8.0550 -5.8893 -3.4835 17 6 8.5934 -7.2466 -3.6018 18 6 9.4856 -7.3352 -4.8416 19 6 10.6426 -6.3703 -4.8800 20 1 10.5445 -5.4301 -5.4023 21 6 11.8264 -6.6879 -4.2485 22 7 11.9591 -7.8491 -3.6456 23 14 13.2416 -5.4688 -4.2493 24 1 13.1335 -4.5840 -3.0615 25 1 14.5299 -6.2058 -4.2020 26 1 13.1866 -4.6471 -5.4851 27 6 8.8149 -7.6873 -6.1709 28 6 9.6976 -8.7176 -5.4620 29 6 2.1980 -1.1970 0.0050 30 1 -0.3634 0.0043 1.0276 31 1 -0.3633 0.8878 -0.5175 32 1 -0.3633 -0.8921 -0.5102 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1326 -0.0103 35 1 5.3517 -0.0001 -0.0111 36 1 5.9279 -1.7524 1.2390 37 1 4.5971 -2.5215 2.1367 38 1 5.7649 -3.5247 1.2428 39 1 4.5885 -2.4405 -2.1398 40 1 5.9734 -1.8105 -1.2159 41 1 5.6807 -4.5559 -0.6206 42 1 8.2254 -5.2375 -4.1813 43 1 9.1801 -7.4834 -2.7142 44 1 7.7716 -7.9567 -3.6940 45 1 12.7636 -8.0438 -3.1399 46 1 7.7380 -7.8562 -6.1620 47 1 9.2107 -7.2214 -7.0732 48 1 10.6738 -8.9290 -5.8983 49 1 9.2019 -9.5640 -4.9867 50 1 1.6581 -2.1323 0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323825460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:20 Heat of formation + Delta-G solvation = -57.413328 kcal Electronic energy + Delta-G solvation = -28923.916252 eV Core-core repulsion = 24915.317232 eV Total energy + Delta-G solvation = -4008.599019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69368 -40.60633 -39.66161 -38.45939 -37.43506 -35.26085 -34.37975 -33.97264 -33.06938 -30.67516 -28.96606 -27.87062 -27.68515 -27.22637 -24.89115 -23.40863 -23.00538 -22.88899 -21.46257 -21.31809 -20.53851 -19.42594 -18.10376 -17.89418 -17.41685 -17.11047 -16.77136 -16.65744 -16.34306 -16.08192 -15.74133 -15.66888 -15.42735 -14.94446 -14.67786 -14.51696 -14.43834 -14.37708 -13.92176 -13.85541 -13.69113 -13.48551 -13.21069 -13.01281 -12.94374 -12.85817 -12.80788 -12.71995 -12.38234 -12.31956 -12.16757 -12.01271 -11.72350 -11.65283 -11.43853 -10.98871 -10.74223 -10.43058 -10.33870 -10.17889 -9.88883 -9.69456 -9.47133 -8.12150 -6.24502 0.38395 0.42446 0.50323 1.38788 1.39792 1.42752 1.50444 2.17400 2.41058 2.70810 2.85097 3.16599 3.42726 3.59625 3.64763 3.74163 3.95915 4.05676 4.12471 4.21391 4.28509 4.33012 4.51403 4.53001 4.58968 4.62392 4.64085 4.67296 4.67711 4.81015 4.85356 4.93789 4.93844 4.98488 5.02947 5.05870 5.13484 5.21620 5.28976 5.29079 5.34119 5.36733 5.54485 5.60676 5.67822 5.69690 5.73221 5.76184 5.98971 6.14648 6.35082 6.46564 6.77963 6.82481 7.01457 7.45018 8.95333 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.001955 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.238309 B =14322.299251 C =14914.944001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.124 4.124 5 C -0.131 4.131 6 C -0.079 4.079 7 C -0.052 4.052 8 H 0.100 0.900 9 C -0.147 4.147 10 C 0.127 3.873 11 N -0.686 5.686 12 C 0.514 3.486 13 O -0.542 6.542 14 C 0.495 3.505 15 O -0.557 6.557 16 N -0.667 5.667 17 C 0.174 3.826 18 C -0.006 4.006 19 C -0.503 4.503 20 H 0.057 0.943 21 C 0.027 3.973 22 N -0.903 5.903 23 Si 0.944 3.056 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.267 1.267 27 C -0.181 4.181 28 C -0.147 4.147 29 C -0.124 4.124 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.124 0.876 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.420 0.580 42 H 0.415 0.585 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.259 0.741 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.077 0.923 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.216 15.055 9.572 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.079 4.079 7 C -0.071 4.071 8 H 0.118 0.882 9 C -0.204 4.204 10 C 0.005 3.995 11 N -0.339 5.339 12 C 0.294 3.706 13 O -0.419 6.419 14 C 0.276 3.724 15 O -0.436 6.436 16 N -0.317 5.317 17 C 0.051 3.949 18 C -0.007 4.007 19 C -0.541 4.541 20 H 0.075 0.925 21 C -0.174 4.174 22 N -0.540 5.540 23 Si 0.770 3.230 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.191 1.191 27 C -0.218 4.218 28 C -0.185 4.185 29 C -0.142 4.142 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.142 0.858 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.258 0.742 42 H 0.251 0.749 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.111 0.889 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.008 14.937 9.622 28.285 hybrid contribution 1.385 0.339 0.098 1.429 sum -20.624 15.276 9.720 27.444 Atomic orbital electron populations 1.20831 0.89721 1.03489 1.03000 1.20233 0.97325 0.93050 0.98973 1.21326 0.94410 0.98326 1.00970 1.21386 0.94746 0.98488 0.99521 1.21187 1.00373 0.92373 1.01014 1.19670 0.93773 0.94122 1.00377 1.20287 0.96824 0.96045 0.93937 0.88173 1.21899 0.99398 1.02453 0.96656 1.21622 0.96030 0.82968 0.98924 1.45704 1.45186 1.17992 1.25057 1.19999 0.80415 0.87295 0.82851 1.90748 1.61975 1.50080 1.39091 1.20335 0.80940 0.87970 0.83162 1.90696 1.62793 1.53165 1.36994 1.45761 1.48806 1.15262 1.21876 1.20819 0.94546 0.80714 0.98864 1.19110 0.95647 0.96616 0.89303 1.20625 0.96036 1.02935 1.34516 0.92477 1.25629 1.00218 0.96160 0.95370 1.70084 1.28632 1.22034 1.33261 0.85776 0.79323 0.79394 0.78513 1.20818 1.21170 1.19125 1.23059 0.97351 1.04502 0.96860 1.22397 0.99020 0.92713 1.04411 1.21173 0.93314 0.98523 1.01208 0.90402 0.90780 0.91018 0.84616 0.84686 0.85778 0.92284 0.91159 0.92013 0.91169 0.91139 0.74230 0.74880 0.93938 0.92477 0.93162 0.88873 0.90001 0.91780 0.90471 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 71.24 0.71 -0.31 16 2 C -0.10 -1.32 5.88 -19.87 -0.12 -1.43 16 3 C -0.13 -1.81 9.70 22.27 0.22 -1.60 16 4 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 5 C -0.13 -2.11 8.76 22.27 0.20 -1.92 16 6 C -0.08 -1.23 4.78 -19.87 -0.09 -1.33 16 7 C -0.05 -0.76 2.60 -11.54 -0.03 -0.79 16 8 H 0.10 1.23 7.88 -2.39 -0.02 1.21 16 9 C -0.15 -2.06 8.88 71.98 0.64 -1.42 16 10 C 0.13 2.51 4.80 86.38 0.41 2.93 16 11 N -0.69 -16.36 5.28 -464.40 -2.45 -18.81 16 12 C 0.51 16.58 7.89 87.27 0.69 17.27 16 13 O -0.54 -19.80 16.49 -3.21 -0.05 -19.85 16 14 C 0.50 18.60 7.88 87.27 0.69 19.29 16 15 O -0.56 -22.58 16.46 -3.24 -0.05 -22.63 16 16 N -0.67 -26.86 5.37 -464.40 -2.49 -29.35 16 17 C 0.17 7.70 5.57 86.38 0.48 8.18 16 18 C -0.01 -0.28 1.51 -52.93 -0.08 -0.36 16 19 C -0.50 -26.18 8.38 25.60 0.21 -25.97 16 20 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 21 C 0.03 1.46 5.43 84.66 0.46 1.92 16 22 N -0.90 -50.66 12.72 21.45 0.27 -50.39 16 23 Si 0.94 43.20 29.54 68.60 2.03 45.23 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 C -0.18 -7.18 9.94 30.62 0.30 -6.88 16 28 C -0.15 -6.58 9.26 30.62 0.28 -6.29 16 29 C -0.12 -1.81 9.33 22.27 0.21 -1.60 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 32 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 33 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.12 1.86 7.16 -2.91 -0.02 1.84 16 36 H 0.06 0.86 7.39 -2.39 -0.02 0.84 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.90 7.18 -2.38 -0.02 0.89 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.49 7.57 -2.39 -0.02 1.47 16 41 H 0.42 8.84 7.14 -92.71 -0.66 8.18 16 42 H 0.41 16.53 7.73 -92.71 -0.72 15.81 16 43 H 0.04 2.17 8.09 -2.39 -0.02 2.15 16 44 H 0.06 2.33 8.11 -2.38 -0.02 2.31 16 45 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 46 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 47 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 48 H 0.06 3.13 8.14 -2.39 -0.02 3.12 16 49 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 50 H 0.13 1.53 7.95 -2.91 -0.02 1.51 16 Total: -1.00 -63.70 419.43 2.23 -61.47 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.43 Total: 36.25 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 5.41 Total: -1.91 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -4.67 Total: -98.56 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.11 Total: -42.48 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.70 2.23 -61.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323825460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.058 kcal (2) G-P(sol) polarization free energy of solvation -63.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds