Wall clock time and date at job start Wed Apr 1 2020 04:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 120.00072 * 2 1 4 4 C 1.38208 * 120.00085 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99678 * 359.80989 * 4 3 2 6 6 C 1.38208 * 120.00175 * 0.41863 * 5 4 3 7 7 C 1.50702 * 120.00052 * 179.80717 * 6 5 4 8 8 H 1.09003 * 115.55961 * 154.03687 * 7 6 5 9 9 C 1.52997 * 117.49939 * 8.35656 * 7 6 5 10 10 C 1.52995 * 117.50095 * 299.73296 * 7 6 5 11 11 H 1.09000 * 117.51681 * 359.97438 * 10 7 6 12 12 C 1.50699 * 117.49769 * 214.97923 * 10 7 6 13 13 O 1.21288 * 119.99955 * 359.97438 * 12 10 7 14 14 N 1.34777 * 120.00359 * 179.97438 * 12 10 7 15 15 C 1.47227 * 121.02629 * 0.02562 * 14 12 10 16 16 C 1.53299 * 108.40126 * 129.46516 * 15 14 12 17 17 O 1.42959 * 109.22435 * 52.30769 * 16 15 14 18 18 C 1.42967 * 114.16507 * 297.41799 * 17 16 15 19 19 H 1.08995 * 109.55021 * 302.63037 * 18 17 16 20 20 C 1.52997 * 109.51067 * 182.50096 * 18 17 16 21 21 N 1.46500 * 109.47012 * 65.25684 * 20 18 17 22 22 C 1.36940 * 120.00415 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99472 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00291 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99956 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99819 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47334 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46784 * 120.00484 * 26 24 22 29 29 H 1.48499 * 109.47019 * 240.00000 * 26 24 22 30 30 C 1.47150 * 120.98603 * 180.02562 * 14 12 10 31 31 C 1.38214 * 119.99886 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47006 * 270.02436 * 1 2 3 33 33 H 1.09004 * 109.47140 * 30.01919 * 1 2 3 34 34 H 1.08999 * 109.47494 * 150.02323 * 1 2 3 35 35 H 1.08003 * 119.99989 * 359.97438 * 3 2 1 36 36 H 1.07999 * 120.00277 * 180.02562 * 4 3 2 37 37 H 1.07996 * 119.99762 * 180.23041 * 5 4 3 38 38 H 1.08993 * 117.50220 * 145.01918 * 9 7 6 39 39 H 1.09008 * 117.51560 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.67268 * 9.73779 * 15 14 12 41 41 H 1.09002 * 109.70663 * 249.21494 * 15 14 12 42 42 H 1.08996 * 109.51416 * 292.37699 * 16 15 14 43 43 H 1.09008 * 109.54832 * 172.25461 * 16 15 14 44 44 H 1.08999 * 109.46830 * 185.25090 * 20 18 17 45 45 H 1.08993 * 109.47707 * 305.25545 * 20 18 17 46 46 H 0.97003 * 119.99962 * 359.97438 * 21 20 18 47 47 H 0.96993 * 119.99975 * 180.02562 * 25 24 22 48 48 H 1.09002 * 109.68441 * 110.79633 * 30 14 12 49 49 H 1.08999 * 109.68020 * 350.27975 * 30 14 12 50 50 H 1.07995 * 119.99672 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0050 6 6 3.5806 -1.1970 0.0003 7 6 4.3341 -2.5021 0.0008 8 1 3.8019 -3.3522 0.4278 9 6 5.8494 -2.4429 0.2039 10 6 5.2747 -2.7753 -1.1745 11 1 5.3484 -2.0114 -1.9486 12 6 5.3944 -4.1991 -1.6535 13 8 4.7584 -5.0773 -1.1099 14 7 6.2083 -4.4968 -2.6857 15 6 6.9910 -3.4489 -3.3616 16 6 8.4514 -3.9089 -3.4377 17 8 8.5040 -5.2142 -4.0183 18 6 7.8335 -6.2212 -3.2565 19 1 8.2560 -6.2608 -2.2525 20 6 8.0084 -7.5794 -3.9387 21 7 9.4229 -7.9600 -3.9133 22 6 9.8231 -9.1458 -4.4690 23 1 9.0959 -9.8003 -4.9265 24 6 11.1634 -9.5062 -4.4454 25 7 12.0497 -8.7083 -3.8884 26 14 11.7090 -11.1241 -5.2030 27 1 10.5289 -11.8331 -5.7596 28 1 12.6842 -10.8574 -6.2907 29 1 12.3480 -11.9678 -4.1613 30 6 6.3412 -5.8795 -3.1713 31 6 2.1981 -1.1970 0.0005 32 1 -0.3633 0.0004 1.0276 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1326 0.0010 37 1 5.3516 -0.0001 0.0092 38 1 6.3141 -3.2540 0.7643 39 1 6.3017 -1.4601 0.3367 40 1 6.9278 -2.5203 -2.7943 41 1 6.6028 -3.2914 -4.3679 42 1 8.8763 -3.9392 -2.4345 43 1 9.0213 -3.2132 -4.0536 44 1 7.4208 -8.3298 -3.4100 45 1 7.6685 -7.5135 -4.9721 46 1 10.0761 -7.3719 -3.5027 47 1 12.9862 -8.9599 -3.8722 48 1 5.8874 -5.9671 -4.1585 49 1 5.8475 -6.5609 -2.4786 50 1 1.6580 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327048998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:35 Heat of formation + Delta-G solvation = -13.275240 kcal Electronic energy + Delta-G solvation = -29227.257751 eV Core-core repulsion = 25220.572703 eV Total energy + Delta-G solvation = -4006.685048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.78796 -39.83787 -38.54830 -36.70706 -35.05143 -34.38916 -32.90268 -32.22087 -31.20812 -30.19161 -28.24926 -27.28508 -26.23928 -24.24770 -23.73356 -23.50566 -22.48950 -22.06664 -20.85690 -20.09943 -18.98995 -17.92653 -17.13810 -16.89698 -16.55334 -16.09283 -15.59209 -15.48611 -15.31516 -15.04924 -14.60842 -14.46807 -14.26786 -14.14547 -14.05653 -13.50812 -13.34375 -13.13987 -12.97888 -12.70800 -12.66440 -12.56227 -12.36264 -12.22586 -12.13643 -11.65775 -11.61587 -11.28615 -11.01335 -10.97212 -10.88733 -10.80330 -10.78766 -10.46587 -10.06595 -9.91076 -9.85804 -9.66940 -9.10055 -8.86379 -8.86197 -8.55512 -6.88177 -5.72091 -3.00716 0.92187 1.03231 2.30885 2.69514 3.25810 3.46459 3.51778 3.54268 3.70082 3.94102 4.03145 4.31112 4.44024 4.46667 4.55697 4.58649 4.63585 4.73899 4.74806 4.78464 4.92272 4.97556 5.05238 5.08569 5.13159 5.21103 5.28651 5.30741 5.34395 5.44738 5.47320 5.58036 5.61051 5.65116 5.66250 5.71214 5.73925 5.79408 5.88355 5.95692 6.11572 6.22841 6.26905 6.28540 6.31215 6.56878 6.64936 6.70327 7.21778 7.46000 7.73573 8.00757 8.45996 9.57792 10.14753 10.50618 11.50832 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.001762 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.483253 B =15885.851243 C =16248.182542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.047 4.047 7 C -0.083 4.083 8 H 0.127 0.873 9 C -0.143 4.143 10 C -0.177 4.177 11 H 0.126 0.874 12 C 0.546 3.454 13 O -0.539 6.539 14 N -0.609 5.609 15 C 0.072 3.928 16 C 0.046 3.954 17 O -0.358 6.358 18 C 0.074 3.926 19 H 0.064 0.936 20 C 0.163 3.837 21 N -0.726 5.726 22 C -0.239 4.239 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.908 3.092 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.085 3.915 31 C -0.110 4.110 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.036 0.964 45 H 0.030 0.970 46 H 0.387 0.613 47 H 0.254 0.746 48 H 0.078 0.922 49 H 0.101 0.899 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.918 24.136 8.485 32.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.131 4.131 5 C -0.144 4.144 6 C -0.047 4.047 7 C -0.102 4.102 8 H 0.145 0.855 9 C -0.180 4.180 10 C -0.198 4.198 11 H 0.144 0.856 12 C 0.334 3.666 13 O -0.417 6.417 14 N -0.342 5.342 15 C -0.051 4.051 16 C -0.032 4.032 17 O -0.276 6.276 18 C 0.016 3.984 19 H 0.082 0.918 20 C 0.035 3.965 21 N -0.371 5.371 22 C -0.370 4.370 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.739 3.261 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.038 4.038 31 C -0.128 4.128 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.221 0.779 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.120 0.880 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.179 23.447 8.502 32.081 hybrid contribution 0.582 -0.456 -0.209 0.769 sum -19.596 22.991 8.293 31.327 Atomic orbital electron populations 1.20807 0.91113 1.02891 1.02418 1.19923 0.96149 0.93035 0.99313 1.21048 0.94332 0.97492 1.01478 1.21106 0.94286 0.97895 0.99827 1.21057 1.00047 0.91902 1.01365 1.19098 0.93307 0.92860 0.99460 1.21088 0.91932 0.96918 1.00251 0.85489 1.23157 0.95492 1.03838 0.95504 1.22340 1.07945 0.95854 0.93705 0.85609 1.19592 0.78623 0.89297 0.79074 1.90698 1.45343 1.49032 1.56580 1.48075 1.43946 1.09145 1.33060 1.22555 0.93042 0.91045 0.98467 1.22911 0.94148 0.86539 0.99611 1.88161 1.75559 1.15778 1.48072 1.22801 0.89725 0.89874 0.96047 0.91845 1.20620 0.89131 0.89216 0.97550 1.42236 1.01655 1.22694 1.70505 1.19282 0.92112 0.95790 1.29790 0.91058 1.24745 0.95917 0.98728 1.01631 1.69684 1.01403 1.37220 1.49751 0.86101 0.78318 0.83257 0.78424 1.20542 1.21887 1.21909 1.22366 0.98019 0.82400 1.00966 1.20897 0.93340 0.97842 1.00682 0.91093 0.91526 0.91399 0.86170 0.85966 0.85846 0.87515 0.87243 0.88959 0.90394 0.92772 0.87774 0.94631 0.95243 0.77929 0.93624 0.90400 0.88027 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.08 -0.64 5.88 -104.62 -0.62 -1.26 16 3 C -0.13 -0.89 9.70 -39.58 -0.38 -1.27 16 4 C -0.11 -0.79 10.05 -39.58 -0.40 -1.18 16 5 C -0.13 -0.95 9.30 -39.58 -0.37 -1.31 16 6 C -0.05 -0.41 5.61 -104.63 -0.59 -1.00 16 7 C -0.08 -0.77 5.55 -91.77 -0.51 -1.28 16 8 H 0.13 1.35 7.67 -51.93 -0.40 0.96 16 9 C -0.14 -1.15 9.56 -26.73 -0.26 -1.41 16 10 C -0.18 -1.68 4.59 -91.78 -0.42 -2.10 16 11 H 0.13 0.98 6.91 -51.93 -0.36 0.62 16 12 C 0.55 7.20 7.50 -10.99 -0.08 7.12 16 13 O -0.54 -8.97 15.73 5.55 0.09 -8.88 16 14 N -0.61 -7.81 3.02 -172.19 -0.52 -8.33 16 15 C 0.07 0.72 6.48 -3.49 -0.02 0.70 16 16 C 0.05 0.56 6.98 37.31 0.26 0.82 16 17 O -0.36 -6.23 10.33 -35.23 -0.36 -6.59 16 18 C 0.07 1.29 2.81 -26.56 -0.07 1.21 16 19 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 20 C 0.16 3.39 5.93 -4.04 -0.02 3.37 16 21 N -0.73 -19.11 5.55 -59.91 -0.33 -19.44 16 22 C -0.24 -6.85 9.99 -15.06 -0.15 -7.01 16 23 H 0.07 1.98 7.83 -52.49 -0.41 1.56 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 26 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 C 0.09 1.25 5.93 -3.52 -0.02 1.23 16 31 C -0.11 -0.94 9.39 -39.58 -0.37 -1.32 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.12 0.72 6.02 -52.49 -0.32 0.41 16 38 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.11 0.64 6.17 -51.92 -0.32 0.32 16 40 H 0.09 0.66 5.84 -51.93 -0.30 0.36 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.39 10.80 7.67 -40.82 -0.31 10.48 16 47 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.10 1.57 7.08 -51.93 -0.37 1.20 16 50 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 406.45 15.07 6.13 6.13 Total: -1.00 -34.87 406.45 -10.90 -45.77 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.84 Total: 7.12 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -3.76 Total: -5.48 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.13 Total: -55.83 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.28 Total: -15.47 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.87 -10.90 -45.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327048998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.497 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds