Wall clock time and date at job start Wed Apr 1 2020 04:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 120.00072 * 2 1 4 4 C 1.38208 * 120.00085 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99678 * 359.80989 * 4 3 2 6 6 C 1.38208 * 120.00175 * 0.41863 * 5 4 3 7 7 C 1.50702 * 120.00052 * 179.80717 * 6 5 4 8 8 H 1.09003 * 115.55961 * 154.03687 * 7 6 5 9 9 C 1.52997 * 117.49939 * 8.35656 * 7 6 5 10 10 C 1.52995 * 117.50095 * 299.73296 * 7 6 5 11 11 H 1.09000 * 117.51681 * 359.97438 * 10 7 6 12 12 C 1.50699 * 117.49769 * 214.97923 * 10 7 6 13 13 O 1.21288 * 119.99955 * 359.97438 * 12 10 7 14 14 N 1.34777 * 120.00359 * 179.97438 * 12 10 7 15 15 C 1.47227 * 121.02629 * 0.02562 * 14 12 10 16 16 C 1.53299 * 108.40126 * 129.46516 * 15 14 12 17 17 O 1.42959 * 109.22435 * 52.30769 * 16 15 14 18 18 C 1.42967 * 114.16507 * 297.41799 * 17 16 15 19 19 H 1.08995 * 109.55021 * 302.63037 * 18 17 16 20 20 C 1.52997 * 109.51067 * 182.50096 * 18 17 16 21 21 N 1.46500 * 109.47012 * 65.25684 * 20 18 17 22 22 C 1.36940 * 120.00415 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99472 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00291 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99956 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99819 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47334 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46784 * 120.00484 * 26 24 22 29 29 H 1.48499 * 109.47019 * 240.00000 * 26 24 22 30 30 C 1.47150 * 120.98603 * 180.02562 * 14 12 10 31 31 C 1.38214 * 119.99886 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47006 * 270.02436 * 1 2 3 33 33 H 1.09004 * 109.47140 * 30.01919 * 1 2 3 34 34 H 1.08999 * 109.47494 * 150.02323 * 1 2 3 35 35 H 1.08003 * 119.99989 * 359.97438 * 3 2 1 36 36 H 1.07999 * 120.00277 * 180.02562 * 4 3 2 37 37 H 1.07996 * 119.99762 * 180.23041 * 5 4 3 38 38 H 1.08993 * 117.50220 * 145.01918 * 9 7 6 39 39 H 1.09008 * 117.51560 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.67268 * 9.73779 * 15 14 12 41 41 H 1.09002 * 109.70663 * 249.21494 * 15 14 12 42 42 H 1.08996 * 109.51416 * 292.37699 * 16 15 14 43 43 H 1.09008 * 109.54832 * 172.25461 * 16 15 14 44 44 H 1.08999 * 109.46830 * 185.25090 * 20 18 17 45 45 H 1.08993 * 109.47707 * 305.25545 * 20 18 17 46 46 H 0.97003 * 119.99962 * 359.97438 * 21 20 18 47 47 H 0.96993 * 119.99975 * 180.02562 * 25 24 22 48 48 H 1.09002 * 109.68441 * 110.79633 * 30 14 12 49 49 H 1.08999 * 109.68020 * 350.27975 * 30 14 12 50 50 H 1.07995 * 119.99672 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0050 6 6 3.5806 -1.1970 0.0003 7 6 4.3341 -2.5021 0.0008 8 1 3.8019 -3.3522 0.4278 9 6 5.8494 -2.4429 0.2039 10 6 5.2747 -2.7753 -1.1745 11 1 5.3484 -2.0114 -1.9486 12 6 5.3944 -4.1991 -1.6535 13 8 4.7584 -5.0773 -1.1099 14 7 6.2083 -4.4968 -2.6857 15 6 6.9910 -3.4489 -3.3616 16 6 8.4514 -3.9089 -3.4377 17 8 8.5040 -5.2142 -4.0183 18 6 7.8335 -6.2212 -3.2565 19 1 8.2560 -6.2608 -2.2525 20 6 8.0084 -7.5794 -3.9387 21 7 9.4229 -7.9600 -3.9133 22 6 9.8231 -9.1458 -4.4690 23 1 9.0959 -9.8003 -4.9265 24 6 11.1634 -9.5062 -4.4454 25 7 12.0497 -8.7083 -3.8884 26 14 11.7090 -11.1241 -5.2030 27 1 10.5289 -11.8331 -5.7596 28 1 12.6842 -10.8574 -6.2907 29 1 12.3480 -11.9678 -4.1613 30 6 6.3412 -5.8795 -3.1713 31 6 2.1981 -1.1970 0.0005 32 1 -0.3633 0.0004 1.0276 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1326 0.0010 37 1 5.3516 -0.0001 0.0092 38 1 6.3141 -3.2540 0.7643 39 1 6.3017 -1.4601 0.3367 40 1 6.9278 -2.5203 -2.7943 41 1 6.6028 -3.2914 -4.3679 42 1 8.8763 -3.9392 -2.4345 43 1 9.0213 -3.2132 -4.0536 44 1 7.4208 -8.3298 -3.4100 45 1 7.6685 -7.5135 -4.9721 46 1 10.0761 -7.3719 -3.5027 47 1 12.9862 -8.9599 -3.8722 48 1 5.8874 -5.9671 -4.1585 49 1 5.8475 -6.5609 -2.4786 50 1 1.6580 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327048998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:34 Heat of formation + Delta-G solvation = -34.366907 kcal Electronic energy + Delta-G solvation = -29228.172354 eV Core-core repulsion = 25220.572703 eV Total energy + Delta-G solvation = -4007.599651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72788 -40.58106 -39.61526 -37.49704 -36.68712 -35.77233 -33.95082 -33.38328 -32.01917 -31.66626 -29.40591 -27.91648 -27.59251 -25.51272 -24.74649 -24.43810 -23.62952 -22.94926 -22.21981 -20.74708 -19.92445 -19.26776 -18.71560 -17.77966 -17.54941 -17.19317 -16.77027 -16.51935 -16.23408 -16.04478 -15.95801 -15.63092 -15.29705 -15.03486 -14.94234 -14.63234 -14.48822 -14.34969 -14.02973 -14.02209 -13.64624 -13.40130 -13.20343 -13.03237 -12.95253 -12.82100 -12.81496 -12.64512 -12.27235 -12.20750 -12.03237 -11.89338 -11.84292 -11.67830 -11.59349 -11.45081 -11.21528 -10.98464 -10.89130 -9.67621 -9.64670 -9.41525 -9.02416 -7.95235 -5.24961 0.36447 0.49398 1.34008 1.47442 1.48907 1.59142 1.71218 2.55663 2.62502 2.74225 3.03466 3.27404 3.38819 3.52674 3.58485 3.74702 3.85820 3.90163 3.95624 4.02548 4.04664 4.08165 4.16052 4.17839 4.25536 4.34400 4.41828 4.47105 4.51417 4.54429 4.63438 4.70431 4.74304 4.81953 4.82601 4.86215 4.91984 4.93485 5.01116 5.05655 5.06678 5.17345 5.24127 5.32090 5.47875 5.60033 5.69238 5.72958 6.13721 6.21385 6.23337 6.26997 6.98487 7.32381 8.05466 8.30658 9.28665 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.001762 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.483253 B =15885.851243 C =16248.182542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.132 4.132 4 C -0.116 4.116 5 C -0.130 4.130 6 C -0.058 4.058 7 C -0.088 4.088 8 H 0.103 0.897 9 C -0.127 4.127 10 C -0.176 4.176 11 H 0.153 0.847 12 C 0.540 3.460 13 O -0.583 6.583 14 N -0.610 5.610 15 C 0.076 3.924 16 C 0.038 3.962 17 O -0.388 6.388 18 C 0.090 3.910 19 H 0.047 0.953 20 C 0.160 3.840 21 N -0.740 5.740 22 C -0.248 4.248 23 H 0.078 0.922 24 C -0.076 4.076 25 N -0.969 5.969 26 Si 0.978 3.022 27 H -0.265 1.265 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.094 3.906 31 C -0.131 4.131 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.095 0.905 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.129 0.871 44 H 0.042 0.958 45 H 0.031 0.969 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.400 26.547 8.029 34.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.058 4.058 7 C -0.107 4.107 8 H 0.121 0.879 9 C -0.164 4.164 10 C -0.196 4.196 11 H 0.170 0.830 12 C 0.330 3.670 13 O -0.463 6.463 14 N -0.343 5.343 15 C -0.046 4.046 16 C -0.039 4.039 17 O -0.307 6.307 18 C 0.031 3.969 19 H 0.065 0.935 20 C 0.033 3.967 21 N -0.383 5.383 22 C -0.380 4.380 23 H 0.096 0.904 24 C -0.268 4.268 25 N -0.620 5.620 26 Si 0.806 3.194 27 H -0.190 1.190 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.029 4.029 31 C -0.150 4.150 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.113 0.887 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.147 0.853 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.699 25.883 8.031 34.101 hybrid contribution 0.669 -1.139 -0.041 1.322 sum -20.029 24.744 7.989 32.822 Atomic orbital electron populations 1.20839 0.89994 1.03400 1.02949 1.20182 0.97201 0.92977 0.99084 1.21364 0.94839 0.97961 1.00866 1.21442 0.94409 0.98689 0.98842 1.21283 1.01080 0.91444 1.00910 1.19103 0.93273 0.92929 1.00466 1.20972 0.92678 0.96732 1.00283 0.87931 1.23271 0.94465 1.04901 0.93737 1.22339 1.08795 0.93723 0.94780 0.82997 1.20279 0.77745 0.90556 0.78383 1.90677 1.47091 1.50706 1.57875 1.48180 1.44123 1.08828 1.33120 1.22740 0.90892 0.91321 0.99632 1.23238 0.96230 0.84609 0.99844 1.88097 1.75972 1.17750 1.48847 1.22426 0.91359 0.88675 0.94441 0.93499 1.20759 0.86343 0.91609 0.98018 1.42417 1.03579 1.22006 1.70269 1.19713 0.92532 0.96592 1.29133 0.90392 1.25622 0.96079 1.02404 1.02738 1.69844 1.01468 1.39197 1.51460 0.85012 0.78010 0.79056 0.77281 1.18954 1.21891 1.21929 1.22083 0.95793 0.83845 1.01209 1.21023 0.93827 0.98190 1.01911 0.90511 0.90308 0.91605 0.84316 0.83667 0.83888 0.88678 0.84148 0.85250 0.89091 0.93013 0.85291 0.93993 0.95097 0.79342 0.93980 0.89515 0.89252 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.01 71.24 0.71 -0.44 16 2 C -0.09 -1.34 5.88 -19.86 -0.12 -1.46 16 3 C -0.13 -1.58 9.70 22.27 0.22 -1.36 16 4 C -0.12 -1.27 10.05 22.27 0.22 -1.05 16 5 C -0.13 -1.59 9.30 22.27 0.21 -1.38 16 6 C -0.06 -0.93 5.61 -19.87 -0.11 -1.04 16 7 C -0.09 -1.58 5.55 -11.54 -0.06 -1.64 16 8 H 0.10 2.33 7.67 -2.39 -0.02 2.32 16 9 C -0.13 -1.79 9.56 30.59 0.29 -1.50 16 10 C -0.18 -2.99 4.59 -11.54 -0.05 -3.05 16 11 H 0.15 1.78 6.91 -2.39 -0.02 1.76 16 12 C 0.54 13.95 7.50 87.66 0.66 14.61 16 13 O -0.58 -20.00 15.73 -3.05 -0.05 -20.05 16 14 N -0.61 -14.99 3.02 -817.09 -2.47 -17.46 16 15 C 0.08 1.32 6.48 86.34 0.56 1.87 16 16 C 0.04 0.86 6.98 72.08 0.50 1.36 16 17 O -0.39 -13.37 10.33 -148.98 -1.54 -14.91 16 18 C 0.09 3.16 2.81 30.70 0.09 3.24 16 19 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 20 C 0.16 6.75 5.93 86.38 0.51 7.26 16 21 N -0.74 -39.72 5.55 -343.46 -1.91 -41.63 16 22 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 23 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 24 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 25 N -0.97 -60.89 13.06 21.65 0.28 -60.60 16 26 Si 0.98 47.14 29.55 68.60 2.03 49.16 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 30 C 0.09 2.77 5.93 86.36 0.51 3.28 16 31 C -0.13 -2.24 9.39 22.27 0.21 -2.03 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.58 8.09 -2.38 -0.02 0.56 16 34 H 0.06 0.67 8.09 -2.39 -0.02 0.65 16 35 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.14 1.09 6.02 -2.91 -0.02 1.07 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.14 1.10 6.17 -2.38 -0.01 1.09 16 40 H 0.13 1.30 5.84 -2.39 -0.01 1.29 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.13 2.27 8.14 -2.38 -0.02 2.25 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 45 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.37 21.57 7.67 -92.71 -0.71 20.85 16 47 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 48 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 49 H 0.09 2.84 7.08 -2.39 -0.02 2.83 16 50 H 0.12 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -77.32 406.45 2.23 -75.09 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.23 Total: 31.28 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.65 Total: -0.88 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -4.09 Total: -119.69 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.59 Total: -34.96 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.32 2.23 -75.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327048998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.720 kcal (2) G-P(sol) polarization free energy of solvation -77.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds