Wall clock time and date at job start Wed Apr 1 2020 04:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38250 * 120.00377 * 2 1 4 4 C 1.38214 * 120.00264 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99889 * 0.02808 * 4 3 2 6 6 C 1.38210 * 119.99875 * 359.69996 * 5 4 3 7 7 C 1.38211 * 119.99761 * 179.97438 * 2 1 3 8 8 C 1.50705 * 120.00177 * 359.97438 * 7 2 1 9 9 H 1.08992 * 109.47168 * 325.00463 * 8 7 2 10 10 C 1.53001 * 109.46969 * 85.00139 * 8 7 2 11 11 N 1.46497 * 109.47242 * 205.00140 * 8 7 2 12 12 C 1.34777 * 120.00184 * 154.99991 * 11 8 7 13 13 O 1.21355 * 119.99671 * 0.02562 * 12 11 8 14 14 C 1.49451 * 120.00353 * 180.02562 * 12 11 8 15 15 O 1.21356 * 119.99743 * 353.07215 * 14 12 11 16 16 N 1.34774 * 120.00265 * 173.07184 * 14 12 11 17 17 C 1.46927 * 120.62759 * 1.66919 * 16 14 12 18 18 C 1.52759 * 109.01063 * 233.58503 * 17 16 14 19 19 C 1.53034 * 109.38454 * 305.59215 * 18 17 16 20 20 C 1.50699 * 109.45137 * 181.24959 * 19 18 17 21 21 H 1.07998 * 120.00431 * 239.93791 * 20 19 18 22 22 C 1.37884 * 119.99801 * 59.94119 * 20 19 18 23 23 N 1.31512 * 119.99570 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00046 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47065 * 59.99845 * 24 22 20 26 26 H 1.48501 * 109.46961 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47148 * 299.99831 * 24 22 20 28 28 C 1.53045 * 109.53999 * 61.24051 * 19 18 17 29 29 C 1.46921 * 120.63130 * 181.95430 * 16 14 12 30 30 H 1.08997 * 109.47002 * 270.01755 * 1 2 3 31 31 H 1.09000 * 109.47084 * 30.02003 * 1 2 3 32 32 H 1.08994 * 109.47299 * 150.01845 * 1 2 3 33 33 H 1.08004 * 119.99786 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.00337 * 180.02562 * 4 3 2 35 35 H 1.08003 * 119.99568 * 179.97438 * 5 4 3 36 36 H 1.08004 * 119.99829 * 180.30067 * 6 5 4 37 37 H 1.08996 * 109.47214 * 300.00104 * 10 8 7 38 38 H 1.09002 * 109.46943 * 60.00171 * 10 8 7 39 39 H 1.09002 * 109.47012 * 179.97438 * 10 8 7 40 40 H 0.97008 * 120.00345 * 335.00017 * 11 8 7 41 41 H 1.09000 * 109.59124 * 353.42631 * 17 16 14 42 42 H 1.09003 * 109.58147 * 113.84840 * 17 16 14 43 43 H 1.09000 * 109.56393 * 185.55478 * 18 17 16 44 44 H 1.08999 * 109.35650 * 65.50366 * 18 17 16 45 45 H 1.08998 * 109.46329 * 301.21709 * 19 18 17 46 46 H 0.97002 * 119.99981 * 179.97438 * 23 22 20 47 47 H 1.08992 * 109.49843 * 178.68508 * 28 19 18 48 48 H 1.09002 * 109.52417 * 58.60019 * 28 19 18 49 49 H 1.08994 * 109.58959 * 246.15213 * 29 16 14 50 50 H 1.09001 * 109.59139 * 6.43981 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5806 -1.1971 0.0062 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.5340 -2.3954 0.5913 10 6 1.0801 -2.8819 -1.4349 11 7 2.2846 -3.5505 0.5858 12 6 1.7152 -4.6323 1.1533 13 8 0.5065 -4.7380 1.1800 14 6 2.5721 -5.7016 1.7497 15 8 3.7773 -5.6598 1.6134 16 7 2.0066 -6.7123 2.4390 17 6 0.5467 -6.7963 2.5816 18 6 0.1973 -6.9115 4.0642 19 6 0.9578 -8.0907 4.6751 20 6 0.5908 -8.2247 6.1306 21 1 1.3548 -8.1454 6.8897 22 6 -0.7206 -8.4486 6.4931 23 7 -1.6510 -8.5447 5.5686 24 14 -1.1755 -8.6154 8.2971 25 1 -0.8123 -7.3681 9.0165 26 1 -2.6368 -8.8493 8.4195 27 1 -0.4390 -9.7608 8.8894 28 6 2.4638 -7.8490 4.5493 29 6 2.8385 -7.7475 3.0673 30 1 -0.3633 0.0003 1.0276 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6583 2.1326 0.0004 34 1 4.1206 2.1325 0.0010 35 1 5.3518 -0.0001 0.0005 36 1 4.1206 -2.1324 0.0110 37 1 0.4550 -2.1018 -1.8695 38 1 1.9906 -2.9885 -2.0246 39 1 0.5355 -3.8261 -1.4341 40 1 3.2507 -3.4662 0.5642 41 1 0.0868 -5.8988 2.1679 42 1 0.1780 -7.6753 2.0528 43 1 -0.8749 -7.0734 4.1751 44 1 0.4816 -5.9915 4.5749 45 1 0.6918 -9.0068 4.1477 46 1 -2.5735 -8.7026 5.8235 47 1 3.0047 -8.6781 5.0054 48 1 2.7272 -6.9203 5.0556 49 1 2.6605 -8.7056 2.5790 50 1 3.8906 -7.4787 2.9720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329796400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:38 Heat of formation + Delta-G solvation = -34.432413 kcal Electronic energy + Delta-G solvation = -30373.905135 eV Core-core repulsion = 26366.302643 eV Total energy + Delta-G solvation = -4007.602492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.93926 -39.95564 -38.44831 -37.02044 -35.85790 -33.55180 -33.26858 -31.56517 -31.20032 -30.05528 -29.67574 -27.27437 -26.65280 -24.98873 -23.84901 -22.64699 -22.39526 -21.62811 -20.68302 -20.19405 -18.94512 -17.59928 -16.98990 -16.57130 -16.27880 -15.99040 -15.64863 -15.38679 -15.03248 -14.59626 -14.53507 -14.46106 -14.03907 -13.79556 -13.69563 -13.38297 -13.13875 -13.03704 -12.88632 -12.70751 -12.56308 -12.44639 -12.28523 -12.16169 -11.90056 -11.70693 -11.39223 -11.30322 -10.98244 -10.92285 -10.81316 -10.59886 -10.34698 -10.05511 -9.69438 -9.49536 -9.22669 -9.16100 -9.11756 -8.86220 -8.49877 -8.29930 -8.07688 -5.99098 -4.05631 1.00046 1.07231 1.61305 2.48424 3.31711 3.36543 3.39033 3.40482 3.43788 3.75188 4.23321 4.43368 4.48430 4.52672 4.59736 4.72712 4.95250 4.98214 5.02001 5.21456 5.30096 5.31400 5.33804 5.38871 5.53818 5.61043 5.64866 5.70619 5.78122 5.86434 5.92380 5.96943 6.04432 6.10529 6.18362 6.20757 6.26404 6.32089 6.48345 6.63201 6.67195 6.75909 6.82740 6.99196 7.11436 7.18241 7.32449 7.68009 7.80423 7.91201 7.97884 8.09643 8.25686 8.43773 8.97301 9.58975 11.06288 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.002446 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.266322 B =11444.379039 C =12022.744910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.092 4.092 8 C 0.180 3.820 9 H 0.105 0.895 10 C -0.160 4.160 11 N -0.701 5.701 12 C 0.514 3.486 13 O -0.500 6.500 14 C 0.499 3.501 15 O -0.547 6.547 16 N -0.557 5.557 17 C 0.044 3.956 18 C -0.121 4.121 19 C 0.046 3.954 20 C -0.513 4.513 21 H 0.054 0.946 22 C 0.061 3.939 23 N -0.890 5.890 24 Si 0.891 3.109 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.278 1.278 28 C -0.122 4.122 29 C 0.106 3.894 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.410 0.590 41 H 0.142 0.858 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.035 0.965 45 H 0.027 0.973 46 H 0.261 0.739 47 H 0.063 0.937 48 H 0.052 0.948 49 H 0.067 0.933 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.092 17.533 -15.303 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.073 4.073 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.138 4.138 6 C -0.130 4.130 7 C -0.092 4.092 8 C 0.076 3.924 9 H 0.123 0.877 10 C -0.218 4.218 11 N -0.356 5.356 12 C 0.297 3.703 13 O -0.376 6.376 14 C 0.281 3.719 15 O -0.427 6.427 16 N -0.288 5.288 17 C -0.076 4.076 18 C -0.159 4.159 19 C 0.027 3.973 20 C -0.552 4.552 21 H 0.072 0.928 22 C -0.140 4.140 23 N -0.529 5.529 24 Si 0.719 3.281 25 H -0.204 1.204 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.160 4.160 29 C -0.016 4.016 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.249 0.751 41 H 0.158 0.842 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.630 17.406 -15.359 24.142 hybrid contribution 0.239 -0.151 1.131 1.166 sum 6.869 17.255 -14.228 23.395 Atomic orbital electron populations 1.20952 0.90927 1.03264 1.03044 1.19685 0.96201 0.92187 0.99185 1.21027 0.94288 0.97360 1.00879 1.21166 0.94327 0.98111 0.99910 1.21114 1.00036 0.92289 1.00336 1.20923 0.93471 0.98404 1.00171 1.19738 0.93857 0.93892 1.01755 1.19890 0.93822 0.83205 0.95495 0.87713 1.22190 1.02258 1.02708 0.94643 1.46011 1.11431 1.20040 1.58120 1.20436 0.88297 0.83098 0.78511 1.90376 1.14535 1.76673 1.56043 1.19809 0.87650 0.83355 0.81104 1.90692 1.14183 1.77100 1.60719 1.48256 1.09906 1.23092 1.47583 1.23455 0.76802 1.06164 1.01198 1.21901 1.04971 0.98733 0.90291 1.18682 0.88087 0.94312 0.96201 1.21152 0.93176 1.48902 0.91926 0.92817 1.24963 0.96602 0.95176 0.97225 1.69835 1.01233 1.49542 1.32276 0.86681 0.77242 0.78577 0.85621 1.20366 1.21306 1.20339 1.22015 1.00886 1.01027 0.92121 1.21896 0.94878 0.89678 0.95109 0.90592 0.91240 0.90831 0.85859 0.85996 0.85830 0.85979 0.91030 0.92015 0.91164 0.75128 0.84166 0.92243 0.87672 0.94627 0.95467 0.92913 0.91879 0.92907 0.91514 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.22 36.01 0.33 -0.58 16 2 C -0.07 -0.64 5.88 -104.63 -0.62 -1.25 16 3 C -0.12 -0.94 9.70 -39.59 -0.38 -1.32 16 4 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 5 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 6 C -0.11 -1.03 9.24 -39.58 -0.37 -1.39 16 7 C -0.09 -0.89 5.06 -104.62 -0.53 -1.42 16 8 C 0.18 1.89 2.09 -69.08 -0.14 1.75 16 9 H 0.11 1.20 6.43 -51.93 -0.33 0.87 16 10 C -0.16 -1.47 9.27 37.16 0.34 -1.13 16 11 N -0.70 -8.64 4.99 -55.36 -0.28 -8.92 16 12 C 0.51 8.04 7.77 -11.58 -0.09 7.95 16 13 O -0.50 -8.57 12.68 5.49 0.07 -8.50 16 14 C 0.50 8.85 7.76 -11.59 -0.09 8.76 16 15 O -0.55 -10.11 15.91 5.49 0.09 -10.03 16 16 N -0.56 -10.52 2.98 -173.54 -0.52 -11.04 16 17 C 0.04 0.87 6.20 -3.93 -0.02 0.85 16 18 C -0.12 -2.82 5.14 -26.84 -0.14 -2.96 16 19 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 20 C -0.51 -13.92 8.56 -34.44 -0.29 -14.22 16 21 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 22 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 23 N -0.89 -24.99 11.30 55.43 0.63 -24.36 16 24 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C -0.12 -2.53 5.30 -26.60 -0.14 -2.67 16 29 C 0.11 1.95 6.43 -3.71 -0.02 1.93 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.07 0.52 5.43 -51.93 -0.28 0.24 16 33 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 36 H 0.12 1.03 6.06 -52.48 -0.32 0.71 16 37 H 0.07 0.54 6.91 -51.93 -0.36 0.19 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.41 4.65 5.69 -40.82 -0.23 4.42 16 41 H 0.14 2.77 3.79 -56.97 -0.22 2.55 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.11 2.74 6.03 -51.93 -0.31 2.43 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.08 1.41 7.01 -51.93 -0.36 1.05 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -30.15 392.73 -9.81 -39.96 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.45 Total: 6.69 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.24 Total: -5.88 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.17 Total: -44.32 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.16 Total: -18.53 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.15 -9.81 -39.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329796400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.525 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds