Wall clock time and date at job start Wed Apr 1 2020 04:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38242 * 120.00124 * 2 1 4 4 C 1.38227 * 120.00150 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00347 * 359.97096 * 4 3 2 6 6 C 1.50700 * 120.00367 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47089 * 19.99544 * 6 5 4 8 8 C 1.53004 * 109.46760 * 260.00053 * 6 5 4 9 9 N 1.46494 * 109.47473 * 140.00327 * 6 5 4 10 10 C 1.34773 * 120.00044 * 205.00474 * 9 6 5 11 11 O 1.21343 * 120.00288 * 359.97438 * 10 9 6 12 12 C 1.49459 * 120.00091 * 180.02562 * 10 9 6 13 13 O 1.21348 * 119.99812 * 6.38709 * 12 10 9 14 14 N 1.34781 * 119.99728 * 186.39612 * 12 10 9 15 15 C 1.46918 * 120.63066 * 7.08079 * 14 12 10 16 16 C 1.53188 * 108.77361 * 233.58705 * 15 14 12 17 17 C 1.53046 * 109.31259 * 305.36302 * 16 15 14 18 18 C 1.53045 * 109.53343 * 61.36783 * 17 16 15 19 19 H 1.08998 * 109.49756 * 58.58585 * 18 17 16 20 20 C 1.50702 * 109.49364 * 178.68290 * 18 17 16 21 21 H 1.07999 * 120.00475 * 359.97438 * 20 18 17 22 22 C 1.37879 * 119.99447 * 180.02562 * 20 18 17 23 23 N 1.31507 * 120.00285 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99727 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47229 * 59.99802 * 24 22 20 26 26 H 1.48503 * 109.47246 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47262 * 299.99839 * 24 22 20 28 28 C 1.46927 * 120.62303 * 186.80018 * 14 12 10 29 29 C 1.38242 * 119.99967 * 0.28013 * 5 4 3 30 30 C 1.38231 * 120.00300 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47214 * 90.00308 * 1 2 3 32 32 H 1.09000 * 109.46801 * 210.00181 * 1 2 3 33 33 H 1.08996 * 109.47447 * 330.00562 * 1 2 3 34 34 H 1.08006 * 119.99518 * 359.97337 * 3 2 1 35 35 H 1.08004 * 119.99790 * 180.02562 * 4 3 2 36 36 H 1.08994 * 109.47184 * 300.00076 * 8 6 5 37 37 H 1.09004 * 109.47429 * 60.00103 * 8 6 5 38 38 H 1.09005 * 109.46763 * 179.97438 * 8 6 5 39 39 H 0.97002 * 120.00110 * 24.99565 * 9 6 5 40 40 H 1.08997 * 109.59139 * 353.37375 * 15 14 12 41 41 H 1.09005 * 109.58542 * 113.65868 * 15 14 12 42 42 H 1.08993 * 109.50252 * 65.31798 * 16 15 14 43 43 H 1.09006 * 109.50093 * 185.41938 * 16 15 14 44 44 H 1.09002 * 109.45822 * 181.38611 * 17 16 15 45 45 H 1.08995 * 109.45941 * 301.36226 * 17 16 15 46 46 H 0.97005 * 120.00017 * 180.02562 * 23 22 20 47 47 H 1.09001 * 109.58361 * 246.19576 * 28 14 12 48 48 H 1.08991 * 109.58938 * 6.62964 * 28 14 12 49 49 H 1.07988 * 120.00287 * 179.72795 * 29 5 4 50 50 H 1.08002 * 119.99793 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0017 6 6 5.7787 0.0001 0.0028 7 1 6.1417 0.9660 0.3540 8 6 6.2897 -0.2511 -1.4173 9 7 6.2664 -1.0575 0.8915 10 6 7.4879 -0.9566 1.4520 11 8 8.1839 0.0099 1.2203 12 6 7.9857 -2.0359 2.3582 13 8 7.3423 -3.0552 2.4983 14 7 9.1492 -1.8769 3.0198 15 6 9.8614 -0.5924 2.9837 16 6 11.3030 -0.8406 2.5290 17 6 11.9465 -1.8908 3.4375 18 6 11.1721 -3.2063 3.3274 19 1 11.1735 -3.5437 2.2910 20 6 11.8257 -4.2489 4.1975 21 1 12.7057 -3.9989 4.7714 22 6 11.3006 -5.5222 4.2599 23 7 10.2298 -5.8271 3.5599 24 14 12.1110 -6.8148 5.3378 25 1 12.1068 -6.3554 6.7499 26 1 11.3591 -8.0910 5.2308 27 1 13.5112 -7.0257 4.8901 28 6 9.7261 -2.9832 3.7957 29 6 3.5806 -1.1971 -0.0036 30 6 2.1982 -1.1971 0.0005 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6581 2.1325 -0.0004 35 1 4.1205 2.1326 0.0010 36 1 5.9266 -1.2169 -1.7685 37 1 5.9269 0.5359 -2.0786 38 1 7.3798 -0.2506 -1.4165 39 1 5.7102 -1.8303 1.0766 40 1 9.3675 0.0797 2.2819 41 1 9.8613 -0.1465 3.9783 42 1 11.3033 -1.2003 1.5001 43 1 11.8690 0.0890 2.5900 44 1 12.9803 -2.0513 3.1313 45 1 11.9235 -1.5413 4.4696 46 1 9.8602 -6.7228 3.6042 47 1 9.7174 -2.7294 4.8557 48 1 9.1430 -3.8889 3.6299 49 1 4.1205 -2.1323 -0.0071 50 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330833980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:37 Heat of formation + Delta-G solvation = -41.309345 kcal Electronic energy + Delta-G solvation = -30152.005045 eV Core-core repulsion = 26144.104347 eV Total energy + Delta-G solvation = -4007.900698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.72744 -39.76838 -38.29486 -36.85824 -35.99389 -33.33972 -32.75107 -31.70847 -31.22313 -30.49459 -29.71356 -27.03835 -25.99238 -24.99606 -23.66932 -23.22334 -22.09646 -21.76248 -20.55639 -20.16658 -18.86465 -17.54557 -16.79025 -16.48233 -15.92108 -15.80855 -15.45344 -15.28476 -14.99960 -14.57960 -14.52574 -14.24061 -13.94179 -13.78254 -13.68559 -13.59197 -13.29647 -13.13487 -12.73506 -12.58554 -12.55674 -12.42738 -12.10143 -12.08166 -11.83653 -11.68955 -11.37453 -11.26344 -11.07548 -10.96263 -10.70969 -10.46782 -10.27083 -10.05158 -9.87671 -9.36423 -9.21421 -9.19089 -9.10642 -8.81544 -8.50951 -8.40170 -7.81346 -6.01606 -4.09652 0.98453 1.12584 1.79712 2.69965 3.31778 3.37305 3.38991 3.44960 3.65909 3.97856 4.28441 4.42110 4.51081 4.62380 4.71507 4.72714 4.91003 5.05797 5.12999 5.18409 5.25398 5.28963 5.37977 5.44218 5.49284 5.65552 5.67009 5.70929 5.78226 5.78417 5.90167 6.00676 6.07456 6.12012 6.25563 6.30794 6.33635 6.40608 6.60920 6.64209 6.70392 6.76727 6.87972 7.00224 7.06238 7.18522 7.25095 7.59318 7.83344 7.95832 7.99926 8.17250 8.35895 8.58523 8.94116 9.55729 11.04100 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.002379 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.829901 B =11769.298561 C =12895.812352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.102 4.102 5 C -0.097 4.097 6 C 0.182 3.818 7 H 0.100 0.900 8 C -0.159 4.159 9 N -0.699 5.699 10 C 0.515 3.485 11 O -0.514 6.514 12 C 0.494 3.506 13 O -0.525 6.525 14 N -0.566 5.566 15 C 0.050 3.950 16 C -0.127 4.127 17 C -0.113 4.113 18 C 0.041 3.959 19 H 0.029 0.971 20 C -0.519 4.519 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.883 5.883 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.108 3.892 29 C -0.107 4.107 30 C -0.115 4.115 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.412 0.588 40 H 0.144 0.856 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.264 0.736 47 H 0.048 0.952 48 H 0.122 0.878 49 H 0.125 0.875 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.588 14.728 -9.126 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.121 4.121 5 C -0.098 4.098 6 C 0.078 3.922 7 H 0.118 0.882 8 C -0.217 4.217 9 N -0.353 5.353 10 C 0.298 3.702 11 O -0.391 6.391 12 C 0.275 3.725 13 O -0.402 6.402 14 N -0.298 5.298 15 C -0.072 4.072 16 C -0.165 4.165 17 C -0.151 4.151 18 C 0.022 3.978 19 H 0.048 0.952 20 C -0.558 4.558 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.521 5.521 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.011 4.011 29 C -0.125 4.125 30 C -0.133 4.133 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.250 0.750 40 H 0.160 0.840 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.140 0.860 49 H 0.143 0.857 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.542 14.700 -9.235 23.979 hybrid contribution 0.294 -1.173 0.745 1.420 sum -16.248 13.527 -8.490 22.783 Atomic orbital electron populations 1.20803 0.91178 1.02878 1.02331 1.19973 0.96155 0.93245 0.99353 1.21007 0.93973 0.97602 1.01097 1.20969 0.94192 0.97330 0.99601 1.19883 0.94440 0.93868 1.01594 1.19869 0.89215 0.92458 0.90697 0.88209 1.22182 1.02350 1.02480 0.94725 1.46023 1.17326 1.24714 1.47265 1.20796 0.81691 0.86874 0.80871 1.90292 1.54369 1.33197 1.61273 1.19751 0.83169 0.87146 0.82400 1.90754 1.56042 1.29287 1.64154 1.48441 1.19805 1.14927 1.46641 1.23080 0.94402 0.86315 1.03408 1.21851 0.95254 0.99134 1.00277 1.21670 0.99090 0.96447 0.97895 1.19044 0.89954 0.91159 0.97614 0.95238 1.21062 1.12360 0.94811 1.27562 0.92303 1.25060 0.94979 0.98484 0.95540 1.69865 1.21298 1.20704 1.40184 0.86628 0.79436 0.80801 0.80967 1.20226 1.21256 1.20259 1.22576 0.97981 0.88407 0.92168 1.21000 0.94378 0.97676 0.99468 1.21038 0.93980 0.97732 1.00578 0.91148 0.91446 0.91539 0.85930 0.85691 0.91996 0.91278 0.91248 0.75046 0.83984 0.92759 0.92342 0.92300 0.93093 0.93258 0.92586 0.93371 0.85971 0.85747 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 36.00 0.36 -0.31 16 2 C -0.09 -0.71 5.88 -104.62 -0.62 -1.33 16 3 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 4 C -0.10 -0.89 9.67 -39.59 -0.38 -1.27 16 5 C -0.10 -0.95 4.95 -104.62 -0.52 -1.47 16 6 C 0.18 1.96 2.78 -69.08 -0.19 1.77 16 7 H 0.10 1.10 7.44 -51.93 -0.39 0.71 16 8 C -0.16 -1.59 9.46 37.16 0.35 -1.24 16 9 N -0.70 -9.31 5.02 -55.37 -0.28 -9.59 16 10 C 0.51 8.54 7.74 -11.58 -0.09 8.45 16 11 O -0.51 -8.68 12.76 5.50 0.07 -8.61 16 12 C 0.49 10.09 7.74 -11.58 -0.09 10.00 16 13 O -0.52 -12.04 15.94 5.50 0.09 -11.95 16 14 N -0.57 -11.96 2.97 -173.02 -0.51 -12.47 16 15 C 0.05 0.89 6.27 -3.72 -0.02 0.87 16 16 C -0.13 -2.28 6.08 -26.61 -0.16 -2.45 16 17 C -0.11 -2.36 5.10 -26.68 -0.14 -2.50 16 18 C 0.04 1.04 2.26 -91.42 -0.21 0.83 16 19 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 20 C -0.52 -14.14 8.56 -34.44 -0.29 -14.44 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 22 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 23 N -0.88 -25.56 11.41 55.43 0.63 -24.93 16 24 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.11 2.66 5.41 -3.49 -0.02 2.64 16 29 C -0.11 -1.03 9.05 -39.58 -0.36 -1.39 16 30 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 35 H 0.13 0.88 8.04 -52.48 -0.42 0.46 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.41 5.33 6.37 -40.82 -0.26 5.07 16 40 H 0.14 2.47 3.78 -56.75 -0.21 2.26 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.12 3.42 5.20 -51.93 -0.27 3.15 16 49 H 0.12 1.14 6.93 -52.49 -0.36 0.78 16 50 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -30.93 400.30 -10.02 -40.95 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.79 Total: 7.27 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.24 Total: -2.93 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.16 Total: -46.99 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.16 Total: -20.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.93 -10.02 -40.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330833980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.361 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds