Wall clock time and date at job start Wed Apr 1 2020 04:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38242 * 120.00124 * 2 1 4 4 C 1.38227 * 120.00150 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00347 * 359.97096 * 4 3 2 6 6 C 1.50700 * 120.00367 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47089 * 19.99544 * 6 5 4 8 8 C 1.53004 * 109.46760 * 260.00053 * 6 5 4 9 9 N 1.46494 * 109.47473 * 140.00327 * 6 5 4 10 10 C 1.34773 * 120.00044 * 205.00474 * 9 6 5 11 11 O 1.21343 * 120.00288 * 359.97438 * 10 9 6 12 12 C 1.49459 * 120.00091 * 180.02562 * 10 9 6 13 13 O 1.21348 * 119.99812 * 6.38709 * 12 10 9 14 14 N 1.34781 * 119.99728 * 186.39612 * 12 10 9 15 15 C 1.46918 * 120.63066 * 7.08079 * 14 12 10 16 16 C 1.53188 * 108.77361 * 233.58705 * 15 14 12 17 17 C 1.53046 * 109.31259 * 305.36302 * 16 15 14 18 18 C 1.53045 * 109.53343 * 61.36783 * 17 16 15 19 19 H 1.08998 * 109.49756 * 58.58585 * 18 17 16 20 20 C 1.50702 * 109.49364 * 178.68290 * 18 17 16 21 21 H 1.07999 * 120.00475 * 359.97438 * 20 18 17 22 22 C 1.37879 * 119.99447 * 180.02562 * 20 18 17 23 23 N 1.31507 * 120.00285 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99727 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47229 * 59.99802 * 24 22 20 26 26 H 1.48503 * 109.47246 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47262 * 299.99839 * 24 22 20 28 28 C 1.46927 * 120.62303 * 186.80018 * 14 12 10 29 29 C 1.38242 * 119.99967 * 0.28013 * 5 4 3 30 30 C 1.38231 * 120.00300 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47214 * 90.00308 * 1 2 3 32 32 H 1.09000 * 109.46801 * 210.00181 * 1 2 3 33 33 H 1.08996 * 109.47447 * 330.00562 * 1 2 3 34 34 H 1.08006 * 119.99518 * 359.97337 * 3 2 1 35 35 H 1.08004 * 119.99790 * 180.02562 * 4 3 2 36 36 H 1.08994 * 109.47184 * 300.00076 * 8 6 5 37 37 H 1.09004 * 109.47429 * 60.00103 * 8 6 5 38 38 H 1.09005 * 109.46763 * 179.97438 * 8 6 5 39 39 H 0.97002 * 120.00110 * 24.99565 * 9 6 5 40 40 H 1.08997 * 109.59139 * 353.37375 * 15 14 12 41 41 H 1.09005 * 109.58542 * 113.65868 * 15 14 12 42 42 H 1.08993 * 109.50252 * 65.31798 * 16 15 14 43 43 H 1.09006 * 109.50093 * 185.41938 * 16 15 14 44 44 H 1.09002 * 109.45822 * 181.38611 * 17 16 15 45 45 H 1.08995 * 109.45941 * 301.36226 * 17 16 15 46 46 H 0.97005 * 120.00017 * 180.02562 * 23 22 20 47 47 H 1.09001 * 109.58361 * 246.19576 * 28 14 12 48 48 H 1.08991 * 109.58938 * 6.62964 * 28 14 12 49 49 H 1.07988 * 120.00287 * 179.72795 * 29 5 4 50 50 H 1.08002 * 119.99793 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0017 6 6 5.7787 0.0001 0.0028 7 1 6.1417 0.9660 0.3540 8 6 6.2897 -0.2511 -1.4173 9 7 6.2664 -1.0575 0.8915 10 6 7.4879 -0.9566 1.4520 11 8 8.1839 0.0099 1.2203 12 6 7.9857 -2.0359 2.3582 13 8 7.3423 -3.0552 2.4983 14 7 9.1492 -1.8769 3.0198 15 6 9.8614 -0.5924 2.9837 16 6 11.3030 -0.8406 2.5290 17 6 11.9465 -1.8908 3.4375 18 6 11.1721 -3.2063 3.3274 19 1 11.1735 -3.5437 2.2910 20 6 11.8257 -4.2489 4.1975 21 1 12.7057 -3.9989 4.7714 22 6 11.3006 -5.5222 4.2599 23 7 10.2298 -5.8271 3.5599 24 14 12.1110 -6.8148 5.3378 25 1 12.1068 -6.3554 6.7499 26 1 11.3591 -8.0910 5.2308 27 1 13.5112 -7.0257 4.8901 28 6 9.7261 -2.9832 3.7957 29 6 3.5806 -1.1971 -0.0036 30 6 2.1982 -1.1971 0.0005 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6581 2.1325 -0.0004 35 1 4.1205 2.1326 0.0010 36 1 5.9266 -1.2169 -1.7685 37 1 5.9269 0.5359 -2.0786 38 1 7.3798 -0.2506 -1.4165 39 1 5.7102 -1.8303 1.0766 40 1 9.3675 0.0797 2.2819 41 1 9.8613 -0.1465 3.9783 42 1 11.3033 -1.2003 1.5001 43 1 11.8690 0.0890 2.5900 44 1 12.9803 -2.0513 3.1313 45 1 11.9235 -1.5413 4.4696 46 1 9.8602 -6.7228 3.6042 47 1 9.7174 -2.7294 4.8557 48 1 9.1430 -3.8889 3.6299 49 1 4.1205 -2.1323 -0.0071 50 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330833980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:36 Heat of formation + Delta-G solvation = -58.693346 kcal Electronic energy + Delta-G solvation = -30152.758872 eV Core-core repulsion = 26144.104347 eV Total energy + Delta-G solvation = -4008.654525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.07335 -40.67985 -39.67254 -38.53925 -37.04798 -35.22242 -33.72160 -33.38808 -31.87103 -31.56947 -31.34079 -27.76330 -27.58850 -26.83471 -24.92637 -23.93761 -23.55530 -23.09281 -21.65203 -21.30987 -20.50317 -19.03714 -18.29273 -18.00073 -17.38102 -16.97358 -16.71402 -16.52581 -16.10515 -16.02392 -15.54058 -15.49203 -15.38825 -14.86429 -14.79185 -14.57484 -14.44803 -14.35364 -14.29972 -13.99156 -13.73807 -13.48393 -13.25981 -13.04322 -12.95990 -12.85600 -12.72869 -12.52538 -12.48795 -12.30076 -12.18305 -11.95983 -11.78653 -11.71603 -11.61101 -11.17523 -10.98609 -10.55879 -10.48262 -10.00328 -9.85198 -9.56029 -9.46482 -8.12818 -6.29243 0.28126 0.34993 0.47250 1.34092 1.41841 1.43967 1.51312 2.12988 2.40757 2.54360 2.81210 3.15347 3.28225 3.51519 3.86795 4.06595 4.08530 4.14745 4.18974 4.20237 4.23650 4.33519 4.51854 4.54143 4.55002 4.61669 4.72592 4.80754 4.81279 4.83376 4.85230 4.90320 4.94349 5.05067 5.13812 5.16301 5.20540 5.23461 5.26745 5.28287 5.38481 5.45612 5.50427 5.55852 5.64281 5.69620 5.83007 5.92363 5.96616 6.08355 6.28702 6.42799 6.71009 6.82289 6.96356 7.40498 8.91247 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.002379 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.829901 B =11769.298561 C =12895.812352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.123 4.123 4 C -0.106 4.106 5 C -0.109 4.109 6 C 0.183 3.817 7 H 0.103 0.897 8 C -0.155 4.155 9 N -0.684 5.684 10 C 0.525 3.475 11 O -0.515 6.515 12 C 0.485 3.515 13 O -0.560 6.560 14 N -0.574 5.574 15 C 0.048 3.952 16 C -0.120 4.120 17 C -0.107 4.107 18 C 0.039 3.961 19 H -0.011 1.011 20 C -0.536 4.536 21 H 0.063 0.937 22 C 0.011 3.989 23 N -0.916 5.916 24 Si 0.960 3.040 25 H -0.267 1.267 26 H -0.287 1.287 27 H -0.269 1.269 28 C 0.121 3.879 29 C -0.121 4.121 30 C -0.128 4.128 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.413 0.587 40 H 0.157 0.843 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.098 0.902 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.261 0.739 47 H 0.044 0.956 48 H 0.083 0.917 49 H 0.120 0.880 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.187 16.991 -9.227 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.124 4.124 5 C -0.110 4.110 6 C 0.081 3.919 7 H 0.121 0.879 8 C -0.213 4.213 9 N -0.337 5.337 10 C 0.306 3.694 11 O -0.393 6.393 12 C 0.267 3.733 13 O -0.439 6.439 14 N -0.305 5.305 15 C -0.072 4.072 16 C -0.158 4.158 17 C -0.144 4.144 18 C 0.020 3.980 19 H 0.007 0.993 20 C -0.574 4.574 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.554 5.554 24 Si 0.785 3.215 25 H -0.192 1.192 26 H -0.213 1.213 27 H -0.194 1.194 28 C -0.001 4.001 29 C -0.140 4.140 30 C -0.146 4.146 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.251 0.749 40 H 0.173 0.827 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.117 0.883 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.102 0.898 49 H 0.138 0.862 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.148 17.004 -9.356 25.899 hybrid contribution 0.387 -1.861 0.727 2.035 sum -16.761 15.143 -8.629 24.180 Atomic orbital electron populations 1.20850 0.89505 1.03601 1.03153 1.20320 0.97523 0.93053 0.98278 1.21322 0.93891 0.98533 1.00343 1.21207 0.94725 0.97492 0.98989 1.19804 0.93540 0.94503 1.03116 1.20044 0.90159 0.91358 0.90376 0.87894 1.22153 1.01254 1.03330 0.94580 1.46053 1.15885 1.25290 1.46479 1.19929 0.82786 0.85790 0.80872 1.90265 1.54689 1.32779 1.61612 1.20487 0.82665 0.87789 0.82350 1.90725 1.57010 1.31010 1.65178 1.48470 1.20384 1.15188 1.46442 1.23332 0.94183 0.84818 1.04830 1.21818 0.95440 0.99819 0.98694 1.21564 0.98739 0.94949 0.99185 1.18982 0.91032 0.93212 0.94751 0.99305 1.21461 1.12561 0.95725 1.27677 0.91880 1.25895 0.95436 1.00743 0.96820 1.70048 1.22732 1.20869 1.41758 0.85586 0.78563 0.77930 0.79447 1.19226 1.21308 1.19401 1.22044 0.97291 0.88373 0.92346 1.21086 0.95020 0.97656 1.00200 1.21251 0.93787 0.98749 1.00776 0.90178 0.91128 0.90467 0.83708 0.84014 0.92096 0.89062 0.92792 0.74871 0.82713 0.91094 0.93535 0.88316 0.92783 0.92419 0.92949 0.93743 0.89827 0.86180 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.24 0.71 -0.36 16 2 C -0.09 -1.33 5.88 -19.87 -0.12 -1.45 16 3 C -0.12 -1.69 9.70 22.27 0.22 -1.47 16 4 C -0.11 -1.62 9.67 22.27 0.22 -1.40 16 5 C -0.11 -2.00 4.95 -19.87 -0.10 -2.10 16 6 C 0.18 3.76 2.78 44.25 0.12 3.88 16 7 H 0.10 2.09 7.44 -2.39 -0.02 2.07 16 8 C -0.16 -2.93 9.46 71.98 0.68 -2.25 16 9 N -0.68 -18.12 5.02 -447.45 -2.24 -20.36 16 10 C 0.52 17.33 7.74 87.27 0.68 18.00 16 11 O -0.51 -16.78 12.76 -3.22 -0.04 -16.82 16 12 C 0.48 20.34 7.74 87.27 0.68 21.01 16 13 O -0.56 -26.94 15.94 -3.24 -0.05 -26.99 16 14 N -0.57 -24.66 2.97 -819.66 -2.43 -27.09 16 15 C 0.05 1.68 6.27 86.36 0.54 2.22 16 16 C -0.12 -4.11 6.08 30.67 0.19 -3.92 16 17 C -0.11 -4.37 5.10 30.62 0.16 -4.22 16 18 C 0.04 2.04 2.26 -11.31 -0.03 2.01 16 19 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 20 C -0.54 -29.75 8.56 25.60 0.22 -29.53 16 21 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 22 C 0.01 0.59 5.30 84.66 0.45 1.04 16 23 N -0.92 -55.19 11.41 21.45 0.24 -54.94 16 24 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 C 0.12 6.17 5.41 86.51 0.47 6.64 16 29 C -0.12 -2.29 9.05 22.27 0.20 -2.09 16 30 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 33 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 34 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.14 1.61 8.04 -2.91 -0.02 1.59 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.41 10.92 6.37 -92.71 -0.59 10.33 16 40 H 0.16 5.09 3.78 -78.76 -0.30 4.80 16 41 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 44 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 47 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.08 4.95 5.20 -2.39 -0.01 4.94 16 49 H 0.12 2.26 6.93 -2.92 -0.02 2.24 16 50 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -69.18 400.30 3.07 -66.12 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.07 Total: 29.74 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.50 Total: 4.12 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -4.43 Total: -102.39 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.09 Total: -43.81 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.18 3.07 -66.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330833980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.426 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds