Wall clock time and date at job start Wed Apr 1 2020 04:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 119.99670 * 2 1 4 4 C 1.38235 * 120.00060 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99856 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00081 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46965 * 339.99774 * 6 5 4 8 8 C 1.53002 * 109.47121 * 99.99828 * 6 5 4 9 9 N 1.46494 * 109.46987 * 219.99700 * 6 5 4 10 10 C 1.34780 * 120.00250 * 155.00127 * 9 6 5 11 11 O 1.21348 * 119.99557 * 359.97438 * 10 9 6 12 12 C 1.49448 * 120.00437 * 180.02562 * 10 9 6 13 13 O 1.21349 * 119.99688 * 6.75821 * 12 10 9 14 14 N 1.34771 * 120.00068 * 186.76540 * 12 10 9 15 15 C 1.46925 * 120.63368 * 8.66460 * 14 12 10 16 16 C 1.53188 * 108.77722 * 126.36715 * 15 14 12 17 17 C 1.53041 * 109.31128 * 54.63820 * 16 15 14 18 18 C 1.53044 * 109.53958 * 298.63468 * 17 16 15 19 19 H 1.08998 * 109.49168 * 301.41301 * 18 17 16 20 20 C 1.50697 * 109.49761 * 181.34655 * 18 17 16 21 21 H 1.07993 * 120.00275 * 0.02562 * 20 18 17 22 22 C 1.37876 * 119.99936 * 179.97438 * 20 18 17 23 23 N 1.31512 * 120.00442 * 180.02562 * 22 20 18 24 24 Si 1.86804 * 119.99817 * 0.02562 * 22 20 18 25 25 H 1.48496 * 109.47320 * 89.99611 * 24 22 20 26 26 H 1.48500 * 109.47133 * 209.99598 * 24 22 20 27 27 H 1.48502 * 109.47097 * 329.99676 * 24 22 20 28 28 C 1.46926 * 120.62994 * 188.38825 * 14 12 10 29 29 C 1.38233 * 119.99909 * 0.27129 * 5 4 3 30 30 C 1.38230 * 120.00382 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47599 * 90.00238 * 1 2 3 32 32 H 1.08999 * 109.47101 * 210.00188 * 1 2 3 33 33 H 1.09002 * 109.47391 * 329.99921 * 1 2 3 34 34 H 1.08001 * 120.00488 * 359.97438 * 3 2 1 35 35 H 1.07995 * 120.00354 * 180.02562 * 4 3 2 36 36 H 1.09001 * 109.46826 * 180.02562 * 8 6 5 37 37 H 1.09007 * 109.46891 * 299.99668 * 8 6 5 38 38 H 1.08993 * 109.47363 * 60.00157 * 8 6 5 39 39 H 0.97001 * 119.99997 * 334.99916 * 9 6 5 40 40 H 1.09005 * 109.58477 * 246.16028 * 15 14 12 41 41 H 1.08998 * 109.58152 * 6.43839 * 15 14 12 42 42 H 1.08999 * 109.49881 * 174.58691 * 16 15 14 43 43 H 1.08998 * 109.50107 * 294.68620 * 16 15 14 44 44 H 1.09008 * 109.45952 * 58.65053 * 17 16 15 45 45 H 1.09001 * 109.46311 * 178.61320 * 17 16 15 46 46 H 0.97002 * 120.00353 * 180.02562 * 23 22 20 47 47 H 1.09003 * 109.58758 * 353.41180 * 28 14 12 48 48 H 1.09005 * 109.59088 * 113.84032 * 28 14 12 49 49 H 1.07999 * 120.00107 * 179.72858 * 29 5 4 50 50 H 1.08000 * 120.00170 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0002 0.0028 7 1 6.1423 0.9657 -0.3489 8 6 6.2876 -0.2496 1.4239 9 7 6.2677 -1.0583 -0.8841 10 6 7.4901 -0.9581 -1.4429 11 8 8.1855 0.0091 -1.2116 12 6 7.9888 -2.0376 -2.3481 13 8 7.2501 -2.9420 -2.6781 14 7 9.2589 -2.0067 -2.7978 15 6 10.2190 -1.0317 -2.2628 16 6 11.4622 -1.7812 -1.7736 17 6 12.0119 -2.6458 -2.9105 18 6 10.9589 -3.6759 -3.3253 19 1 10.6966 -4.2939 -2.4666 20 6 11.5132 -4.5481 -4.4222 21 1 12.5164 -4.3847 -4.7870 22 6 10.7399 -5.5554 -4.9592 23 7 11.2237 -6.3169 -5.9160 24 14 9.0048 -5.8385 -4.3275 25 1 8.0503 -5.0220 -5.1197 26 1 8.6573 -7.2759 -4.4624 27 1 8.9276 -5.4425 -2.8984 28 6 9.7114 -2.9515 -3.8280 29 6 3.5806 -1.1970 -0.0035 30 6 2.1982 -1.1971 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6581 2.1325 -0.0004 35 1 4.1204 2.1326 0.0010 36 1 7.3776 -0.2491 1.4248 37 1 5.9238 0.5380 2.0838 38 1 5.9241 -1.2151 1.7756 39 1 5.7117 -1.8313 -1.0692 40 1 10.5009 -0.3286 -3.0467 41 1 9.7657 -0.4905 -1.4324 42 1 12.2212 -1.0632 -1.4630 43 1 11.1951 -2.4170 -0.9296 44 1 12.2557 -2.0121 -3.7634 45 1 12.9109 -3.1613 -2.5727 46 1 10.6795 -7.0253 -6.2941 47 1 8.9243 -3.6785 -4.0283 48 1 9.9512 -2.4083 -4.7421 49 1 4.1206 -2.1323 -0.0071 50 1 1.6583 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330833981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:41 Heat of formation + Delta-G solvation = -36.699069 kcal Electronic energy + Delta-G solvation = -30337.179026 eV Core-core repulsion = 26329.478244 eV Total energy + Delta-G solvation = -4007.700782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.92728 -39.91989 -38.59726 -37.15675 -36.14832 -33.42087 -32.84604 -31.93652 -31.30145 -30.64138 -30.51219 -27.12395 -26.22043 -25.16277 -23.86088 -23.31634 -22.22800 -21.97217 -20.64324 -20.24780 -19.11691 -17.72722 -17.02345 -16.75921 -16.38049 -15.97171 -15.77125 -15.51387 -15.15377 -14.66513 -14.40616 -14.28591 -14.17405 -13.92358 -13.76816 -13.74409 -13.59906 -13.18568 -13.12234 -12.78231 -12.62408 -12.56700 -12.48256 -12.17477 -12.14997 -11.88033 -11.67839 -11.37050 -11.17374 -11.07644 -10.88555 -10.54079 -10.36929 -10.12538 -9.76752 -9.47812 -9.46809 -9.27319 -9.14839 -8.94015 -8.77301 -8.63117 -8.16368 -6.11985 -4.13613 0.90657 1.05120 1.55886 2.46891 3.33093 3.34856 3.39909 3.43299 3.54382 3.70670 4.18429 4.40258 4.43140 4.47113 4.55544 4.64692 4.82656 4.93823 5.04255 5.09963 5.19720 5.20849 5.28429 5.35089 5.40019 5.44026 5.48651 5.54771 5.64597 5.70684 5.71420 5.87370 5.90740 6.02452 6.04117 6.10910 6.13670 6.22758 6.23868 6.36149 6.44393 6.51065 6.59543 6.62885 6.74503 6.79038 7.03915 7.13929 7.41225 7.61992 7.69512 7.83597 8.21602 8.47597 8.91512 9.49197 10.99902 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015854 B = 0.002699 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.739964 B =10373.194979 C =11736.676744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.118 4.118 4 C -0.102 4.102 5 C -0.099 4.099 6 C 0.182 3.818 7 H 0.101 0.899 8 C -0.159 4.159 9 N -0.699 5.699 10 C 0.515 3.485 11 O -0.513 6.513 12 C 0.495 3.505 13 O -0.531 6.531 14 N -0.570 5.570 15 C 0.072 3.928 16 C -0.136 4.136 17 C -0.102 4.102 18 C 0.005 3.995 19 H 0.031 0.969 20 C -0.515 4.515 21 H 0.078 0.922 22 C 0.072 3.928 23 N -0.895 5.895 24 Si 0.879 3.121 25 H -0.274 1.274 26 H -0.295 1.295 27 H -0.261 1.261 28 C 0.098 3.902 29 C -0.107 4.107 30 C -0.115 4.115 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.412 0.588 40 H 0.066 0.934 41 H 0.130 0.870 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.265 0.735 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.123 0.877 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.633 16.229 15.463 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.120 4.120 5 C -0.099 4.099 6 C 0.078 3.922 7 H 0.119 0.881 8 C -0.217 4.217 9 N -0.353 5.353 10 C 0.297 3.703 11 O -0.389 6.389 12 C 0.276 3.724 13 O -0.408 6.408 14 N -0.301 5.301 15 C -0.050 4.050 16 C -0.174 4.174 17 C -0.140 4.140 18 C -0.014 4.014 19 H 0.049 0.951 20 C -0.553 4.553 21 H 0.097 0.903 22 C -0.131 4.131 23 N -0.532 5.532 24 Si 0.708 3.292 25 H -0.201 1.201 26 H -0.222 1.222 27 H -0.186 1.186 28 C -0.022 4.022 29 C -0.126 4.126 30 C -0.133 4.133 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.249 0.751 40 H 0.084 0.916 41 H 0.147 0.853 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.141 0.859 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.537 16.285 15.308 28.409 hybrid contribution -1.174 -0.697 -0.024 1.366 sum -18.711 15.588 15.285 28.752 Atomic orbital electron populations 1.20810 0.91115 1.02822 1.02489 1.19982 0.96207 0.93225 0.99184 1.21018 0.93968 0.97645 1.00993 1.20973 0.94217 0.97313 0.99520 1.19863 0.94358 0.93904 1.01811 1.19886 0.89325 0.92358 0.90613 0.88119 1.22179 1.02260 1.02564 0.94692 1.46014 1.17286 1.24789 1.47245 1.20493 0.82069 0.87217 0.80513 1.90479 1.54205 1.32726 1.61539 1.19937 0.83668 0.86106 0.82659 1.90749 1.56108 1.35265 1.58727 1.48360 1.08455 1.34618 1.38717 1.22774 0.90045 0.90703 1.01451 1.22002 0.96769 0.99251 0.99419 1.21472 0.98892 0.97144 0.96493 1.19410 0.90824 0.93633 0.97566 0.95099 1.20950 1.02134 1.13675 1.18553 0.90350 1.25060 0.98188 0.95402 0.94422 1.69888 1.37404 1.19954 1.25991 0.86992 0.84749 0.76480 0.80948 1.20057 1.22232 1.18605 1.22737 0.99181 0.91220 0.89087 1.20970 0.94402 0.97577 0.99607 1.21036 0.93959 0.97769 1.00571 0.91033 0.91458 0.91509 0.85854 0.85649 0.91293 0.91127 0.92015 0.75061 0.91578 0.85305 0.91470 0.92289 0.92460 0.92211 0.92490 0.90247 0.90821 0.85888 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.09 -0.67 5.88 -104.63 -0.62 -1.29 16 3 C -0.12 -0.91 9.70 -39.58 -0.38 -1.29 16 4 C -0.10 -0.84 9.67 -39.58 -0.38 -1.22 16 5 C -0.10 -0.91 4.96 -104.62 -0.52 -1.43 16 6 C 0.18 1.81 2.78 -69.08 -0.19 1.61 16 7 H 0.10 1.04 7.44 -51.93 -0.39 0.65 16 8 C -0.16 -1.40 9.46 37.16 0.35 -1.05 16 9 N -0.70 -8.62 5.02 -55.36 -0.28 -8.90 16 10 C 0.51 7.87 7.70 -11.58 -0.09 7.78 16 11 O -0.51 -7.96 12.85 5.50 0.07 -7.89 16 12 C 0.49 9.37 7.73 -11.59 -0.09 9.28 16 13 O -0.53 -11.41 15.93 5.50 0.09 -11.32 16 14 N -0.57 -11.10 2.98 -173.54 -0.52 -11.62 16 15 C 0.07 1.17 5.99 -3.71 -0.02 1.15 16 16 C -0.14 -2.18 6.08 -26.61 -0.16 -2.35 16 17 C -0.10 -1.98 5.11 -26.69 -0.14 -2.12 16 18 C 0.01 0.12 1.83 -91.87 -0.17 -0.05 16 19 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 20 C -0.51 -14.30 9.15 -34.44 -0.32 -14.62 16 21 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 22 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 23 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 24 Si 0.88 23.01 24.32 -169.99 -4.13 18.87 16 25 H -0.27 -7.18 6.92 56.52 0.39 -6.79 16 26 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 27 H -0.26 -6.83 6.53 56.52 0.37 -6.46 16 28 C 0.10 2.22 5.10 -3.93 -0.02 2.20 16 29 C -0.11 -0.98 9.06 -39.58 -0.36 -1.33 16 30 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.82 8.04 -52.49 -0.42 0.40 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.41 4.94 6.35 -40.82 -0.26 4.68 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.13 2.01 4.31 -54.78 -0.24 1.77 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.08 1.98 2.32 -51.93 -0.12 1.86 16 48 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 49 H 0.12 1.04 6.90 -52.49 -0.36 0.68 16 50 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 393.52 15.07 5.93 5.93 Total: -1.00 -32.67 393.52 -8.96 -41.62 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.67 Total: 4.23 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -3.22 Total: -4.35 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.02 Total: -47.10 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.16 Total: -19.21 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.13 Total: 18.87 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.67 -8.96 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330833981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.926 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds