Wall clock time and date at job start Wed Apr 1 2020 03:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99676 * 2 1 4 4 C 1.38750 * 120.05896 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94272 * 179.68577 * 4 3 2 6 6 C 1.38281 * 120.05548 * 0.56314 * 5 4 3 7 7 C 1.50701 * 119.94342 * 179.72618 * 6 5 4 8 8 C 1.50703 * 109.47532 * 264.73063 * 7 6 5 9 9 O 1.21283 * 119.99676 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00228 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99913 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47218 * 179.97438 * 11 10 8 13 13 C 1.29450 * 117.69312 * 94.99764 * 12 11 10 14 14 C 1.50328 * 123.64737 * 180.86052 * 13 12 11 15 15 N 1.46998 * 109.17070 * 349.02195 * 14 13 12 16 16 C 1.36931 * 121.38032 * 222.97029 * 15 14 13 17 17 H 1.07999 * 120.00200 * 155.97036 * 16 15 14 18 18 C 1.38818 * 119.99930 * 335.97418 * 16 15 14 19 19 N 1.31616 * 119.99424 * 344.51156 * 18 16 15 20 20 Si 1.86793 * 120.00033 * 164.51117 * 18 16 15 21 21 H 1.48499 * 109.47596 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47162 * 119.99807 * 20 18 16 23 23 H 1.48498 * 109.47325 * 239.99776 * 20 18 16 24 24 C 1.47341 * 117.24651 * 42.94668 * 15 14 13 25 25 C 1.49966 * 117.69514 * 274.74080 * 12 11 10 26 26 C 1.38243 * 120.11395 * 359.46105 * 6 5 4 27 27 C 1.50698 * 119.97625 * 180.27382 * 26 6 5 28 28 C 1.38165 * 120.05131 * 0.24422 * 26 6 5 29 29 H 1.08994 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46766 * 299.99620 * 1 2 3 31 31 H 1.08998 * 109.47569 * 59.99809 * 1 2 3 32 32 H 1.08002 * 120.02340 * 359.97438 * 4 3 2 33 33 H 1.08009 * 119.96910 * 180.31540 * 5 4 3 34 34 H 1.09007 * 109.47069 * 144.72782 * 7 6 5 35 35 H 1.09003 * 109.46944 * 24.73361 * 7 6 5 36 36 H 0.97001 * 119.99919 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.47305 * 59.99701 * 11 10 8 38 38 H 1.09003 * 109.47431 * 299.99836 * 11 10 8 39 39 H 1.08000 * 118.17404 * 0.88545 * 13 12 11 40 40 H 1.08997 * 109.52109 * 108.93600 * 14 13 12 41 41 H 1.09001 * 109.51633 * 229.11453 * 14 13 12 42 42 H 0.97005 * 119.99607 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.78033 * 57.81404 * 24 15 14 44 44 H 1.09001 * 109.77700 * 178.61818 * 24 15 14 45 45 H 1.08997 * 109.31931 * 281.28933 * 25 12 11 46 46 H 1.09009 * 109.31429 * 40.71615 * 25 12 11 47 47 H 1.08995 * 109.47419 * 89.99133 * 27 26 6 48 48 H 1.08995 * 109.47488 * 209.99676 * 27 26 6 49 49 H 1.09003 * 109.46507 * 329.99690 * 27 26 6 50 50 H 1.08008 * 120.02425 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0071 6 6 3.3018 3.6758 0.0014 7 6 3.9860 5.0186 0.0023 8 6 4.3243 5.4111 -1.4128 9 8 4.0375 4.6733 -2.3317 10 7 4.9454 6.5819 -1.6573 11 6 5.2747 6.9632 -3.0329 12 6 5.9587 8.3060 -3.0319 13 6 7.2531 8.3218 -3.0315 14 6 8.0707 9.5831 -3.0118 15 7 7.1895 10.7335 -3.2585 16 6 7.5603 11.7483 -4.0997 17 1 6.8066 12.3609 -4.5721 18 6 8.9050 11.9897 -4.3456 19 7 9.8219 11.4667 -3.5594 20 14 9.4132 13.0566 -5.7922 21 1 8.2018 13.5195 -6.5156 22 1 10.1741 14.2320 -5.2972 23 1 10.2679 12.2662 -6.7141 24 6 5.8904 10.7494 -2.5635 25 6 5.0919 9.5298 -3.0375 26 6 4.0560 2.5172 0.0003 27 6 5.5608 2.5982 0.0003 28 6 3.4311 1.2849 -0.0001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2128 2.3203 0.0005 33 1 1.3339 4.5114 0.0127 34 1 4.9011 4.9597 0.5917 35 1 3.3211 5.7648 0.4373 36 1 5.1743 7.1722 -0.9223 37 1 4.3597 7.0223 -3.6225 38 1 5.9395 6.2167 -3.4676 39 1 7.7746 7.3762 -3.0466 40 1 8.5484 9.6923 -2.0382 41 1 8.8332 9.5351 -3.7893 42 1 10.7616 11.6350 -3.7314 43 1 6.0477 10.6960 -1.4862 44 1 5.3497 11.6623 -2.8131 45 1 4.7235 9.7061 -4.0481 46 1 4.2443 9.3743 -2.3699 47 1 5.9236 2.6170 1.0279 48 1 5.9714 1.7295 -0.5142 49 1 5.8756 3.5069 -0.5128 50 1 4.0207 0.3800 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333348641.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:49 Heat of formation + Delta-G solvation = -17.048658 kcal Electronic energy + Delta-G solvation = -29077.653768 eV Core-core repulsion = 25070.805092 eV Total energy + Delta-G solvation = -4006.848676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.64283 -39.63373 -38.12583 -37.55641 -34.91260 -33.03803 -32.81425 -32.33716 -30.89405 -29.77110 -28.97530 -27.35890 -26.83249 -26.11656 -24.06905 -22.78493 -22.47336 -21.33929 -21.00134 -20.22336 -17.99559 -17.75212 -17.21956 -16.82124 -16.32018 -16.01952 -15.66300 -15.40372 -15.10700 -15.00338 -14.42889 -14.19431 -14.08251 -13.85097 -13.69656 -13.53018 -13.47358 -13.23214 -13.03985 -12.50254 -12.45073 -12.35463 -12.22005 -12.14870 -11.89822 -11.63217 -11.54633 -11.35341 -11.14628 -11.00775 -10.94228 -10.77462 -10.42300 -10.31081 -9.90153 -9.85824 -9.61592 -8.97107 -8.94519 -8.71637 -8.29040 -8.07317 -6.78175 -5.83209 -3.21968 1.13495 1.20259 2.58924 2.68157 2.98381 3.35691 3.38753 3.43737 3.45675 3.74043 4.46723 4.47197 4.50400 4.64571 4.73745 4.80371 4.92005 4.97095 5.01506 5.08515 5.12387 5.17336 5.26665 5.32962 5.36938 5.39376 5.43647 5.54080 5.56287 5.73642 5.81294 5.88778 5.94370 6.04570 6.08544 6.13912 6.16173 6.29614 6.43237 6.44733 6.53307 6.55335 6.70093 6.83396 7.13460 7.14415 7.22611 7.29635 7.60448 7.70295 7.79476 8.28824 8.34562 9.16171 9.78845 10.36623 11.27282 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.032545 B = 0.001718 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.149419 B =16296.363990 C =16626.914207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.127 3.873 4 C -0.213 4.213 5 C -0.064 4.064 6 C -0.100 4.100 7 C -0.101 4.101 8 C 0.509 3.491 9 O -0.536 6.536 10 N -0.723 5.723 11 C 0.158 3.842 12 C -0.166 4.166 13 C -0.124 4.124 14 C 0.194 3.806 15 N -0.595 5.595 16 C -0.246 4.246 17 H 0.069 0.931 18 C -0.001 4.001 19 N -0.909 5.909 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.144 3.856 25 C -0.090 4.090 26 C -0.028 4.028 27 C -0.118 4.118 28 C -0.152 4.152 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.401 0.599 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.254 0.746 43 H 0.023 0.977 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.593 -19.165 11.410 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.082 3.918 4 C -0.231 4.231 5 C -0.082 4.082 6 C -0.100 4.100 7 C -0.140 4.140 8 C 0.295 3.705 9 O -0.413 6.413 10 N -0.374 5.374 11 C 0.035 3.965 12 C -0.167 4.167 13 C -0.145 4.145 14 C 0.069 3.931 15 N -0.318 5.318 16 C -0.375 4.375 17 H 0.087 0.913 18 C -0.199 4.199 19 N -0.555 5.555 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.017 3.983 25 C -0.129 4.129 26 C -0.028 4.028 27 C -0.174 4.174 28 C -0.171 4.171 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.543 -19.844 10.691 27.380 hybrid contribution 0.142 0.897 -0.483 1.029 sum -15.402 -18.947 10.207 26.465 Atomic orbital electron populations 1.23040 0.78482 1.03815 1.01390 1.86056 1.21328 1.27112 1.88843 1.18971 0.92273 0.84035 0.96482 1.21121 0.99828 0.92270 1.09917 1.20744 0.93665 0.97100 0.96672 1.19031 0.93210 0.93319 1.04471 1.20646 1.02570 0.95683 0.95145 1.20554 0.77693 0.81220 0.91063 1.90722 1.52881 1.51470 1.46201 1.46223 1.60392 1.20819 1.10009 1.20433 0.99418 0.94275 0.82337 1.20502 0.94935 0.93712 1.07570 1.23281 0.95463 1.00748 0.95012 1.19761 0.91442 0.81323 1.00604 1.44128 1.15394 1.20695 1.51615 1.19229 0.90941 1.09111 1.18239 0.91307 1.24987 0.96306 0.99546 0.99072 1.70016 1.00057 1.48459 1.36951 0.86183 0.78318 0.79719 0.82338 1.20299 1.21734 1.21581 1.20992 0.87862 0.95004 0.94423 1.20784 0.96733 0.94445 1.00918 1.19474 0.95955 0.91587 0.95832 1.20855 0.90815 1.03449 1.02331 1.20206 0.91272 0.97973 1.07618 0.88336 0.92696 0.92616 0.85609 0.85860 0.87915 0.88131 0.76456 0.91755 0.91783 0.88807 0.94095 0.88897 0.93642 0.95855 0.92479 0.91761 0.92930 0.90705 0.91141 0.91209 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.24 10.50 -19.44 -0.20 -3.45 16 3 C 0.13 1.40 6.69 -39.22 -0.26 1.14 16 4 C -0.21 -2.13 9.04 -39.43 -0.36 -2.49 16 5 C -0.06 -0.66 9.67 -39.61 -0.38 -1.04 16 6 C -0.10 -1.08 4.37 -104.60 -0.46 -1.54 16 7 C -0.10 -0.93 5.15 -29.03 -0.15 -1.08 16 8 C 0.51 6.49 7.04 -10.99 -0.08 6.41 16 9 O -0.54 -9.07 16.03 5.55 0.09 -8.98 16 10 N -0.72 -8.84 5.55 -61.47 -0.34 -9.18 16 11 C 0.16 2.31 5.66 -5.19 -0.03 2.29 16 12 C -0.17 -2.76 5.22 -100.99 -0.53 -3.29 16 13 C -0.12 -2.29 9.47 -35.78 -0.34 -2.63 16 14 C 0.19 4.46 5.23 -5.10 -0.03 4.44 16 15 N -0.60 -14.51 3.01 -173.56 -0.52 -15.03 16 16 C -0.25 -6.63 9.71 -15.06 -0.15 -6.78 16 17 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 18 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 19 N -0.91 -25.79 11.08 55.49 0.61 -25.18 16 20 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.14 2.87 6.59 -3.43 -0.02 2.84 16 25 C -0.09 -1.51 5.95 -28.09 -0.17 -1.68 16 26 C -0.03 -0.31 5.88 -104.65 -0.62 -0.92 16 27 C -0.12 -1.08 9.21 36.00 0.33 -0.75 16 28 C -0.15 -1.68 9.64 -39.43 -0.38 -2.06 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 31 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 34 H 0.10 0.76 6.98 -51.93 -0.36 0.39 16 35 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 36 H 0.40 4.14 8.46 -40.82 -0.35 3.80 16 37 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 38 H 0.06 0.99 7.78 -51.93 -0.40 0.58 16 39 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.12 7.96 -51.93 -0.41 0.70 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 49 H 0.07 0.70 6.15 -51.93 -0.32 0.38 16 50 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 404.91 15.07 6.10 6.10 Total: -1.00 -32.83 404.91 -9.89 -42.72 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.90 Total: 2.63 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.70 Total: -6.10 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.25 Total: -49.39 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.11 Total: -12.43 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.83 -9.89 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333348641.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.670 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds