Wall clock time and date at job start Wed Apr 1 2020 03:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99676 * 2 1 4 4 C 1.38750 * 120.05896 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94272 * 179.68577 * 4 3 2 6 6 C 1.38281 * 120.05548 * 0.56314 * 5 4 3 7 7 C 1.50701 * 119.94342 * 179.72618 * 6 5 4 8 8 C 1.50703 * 109.47532 * 264.73063 * 7 6 5 9 9 O 1.21283 * 119.99676 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00228 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99913 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47218 * 179.97438 * 11 10 8 13 13 C 1.29450 * 117.69312 * 94.99764 * 12 11 10 14 14 C 1.50328 * 123.64737 * 180.86052 * 13 12 11 15 15 N 1.46998 * 109.17070 * 349.02195 * 14 13 12 16 16 C 1.36931 * 121.38032 * 222.97029 * 15 14 13 17 17 H 1.07999 * 120.00200 * 155.97036 * 16 15 14 18 18 C 1.38818 * 119.99930 * 335.97418 * 16 15 14 19 19 N 1.31616 * 119.99424 * 344.51156 * 18 16 15 20 20 Si 1.86793 * 120.00033 * 164.51117 * 18 16 15 21 21 H 1.48499 * 109.47596 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47162 * 119.99807 * 20 18 16 23 23 H 1.48498 * 109.47325 * 239.99776 * 20 18 16 24 24 C 1.47341 * 117.24651 * 42.94668 * 15 14 13 25 25 C 1.49966 * 117.69514 * 274.74080 * 12 11 10 26 26 C 1.38243 * 120.11395 * 359.46105 * 6 5 4 27 27 C 1.50698 * 119.97625 * 180.27382 * 26 6 5 28 28 C 1.38165 * 120.05131 * 0.24422 * 26 6 5 29 29 H 1.08994 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46766 * 299.99620 * 1 2 3 31 31 H 1.08998 * 109.47569 * 59.99809 * 1 2 3 32 32 H 1.08002 * 120.02340 * 359.97438 * 4 3 2 33 33 H 1.08009 * 119.96910 * 180.31540 * 5 4 3 34 34 H 1.09007 * 109.47069 * 144.72782 * 7 6 5 35 35 H 1.09003 * 109.46944 * 24.73361 * 7 6 5 36 36 H 0.97001 * 119.99919 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.47305 * 59.99701 * 11 10 8 38 38 H 1.09003 * 109.47431 * 299.99836 * 11 10 8 39 39 H 1.08000 * 118.17404 * 0.88545 * 13 12 11 40 40 H 1.08997 * 109.52109 * 108.93600 * 14 13 12 41 41 H 1.09001 * 109.51633 * 229.11453 * 14 13 12 42 42 H 0.97005 * 119.99607 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.78033 * 57.81404 * 24 15 14 44 44 H 1.09001 * 109.77700 * 178.61818 * 24 15 14 45 45 H 1.08997 * 109.31931 * 281.28933 * 25 12 11 46 46 H 1.09009 * 109.31429 * 40.71615 * 25 12 11 47 47 H 1.08995 * 109.47419 * 89.99133 * 27 26 6 48 48 H 1.08995 * 109.47488 * 209.99676 * 27 26 6 49 49 H 1.09003 * 109.46507 * 329.99690 * 27 26 6 50 50 H 1.08008 * 120.02425 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0071 6 6 3.3018 3.6758 0.0014 7 6 3.9860 5.0186 0.0023 8 6 4.3243 5.4111 -1.4128 9 8 4.0375 4.6733 -2.3317 10 7 4.9454 6.5819 -1.6573 11 6 5.2747 6.9632 -3.0329 12 6 5.9587 8.3060 -3.0319 13 6 7.2531 8.3218 -3.0315 14 6 8.0707 9.5831 -3.0118 15 7 7.1895 10.7335 -3.2585 16 6 7.5603 11.7483 -4.0997 17 1 6.8066 12.3609 -4.5721 18 6 8.9050 11.9897 -4.3456 19 7 9.8219 11.4667 -3.5594 20 14 9.4132 13.0566 -5.7922 21 1 8.2018 13.5195 -6.5156 22 1 10.1741 14.2320 -5.2972 23 1 10.2679 12.2662 -6.7141 24 6 5.8904 10.7494 -2.5635 25 6 5.0919 9.5298 -3.0375 26 6 4.0560 2.5172 0.0003 27 6 5.5608 2.5982 0.0003 28 6 3.4311 1.2849 -0.0001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2128 2.3203 0.0005 33 1 1.3339 4.5114 0.0127 34 1 4.9011 4.9597 0.5917 35 1 3.3211 5.7648 0.4373 36 1 5.1743 7.1722 -0.9223 37 1 4.3597 7.0223 -3.6225 38 1 5.9395 6.2167 -3.4676 39 1 7.7746 7.3762 -3.0466 40 1 8.5484 9.6923 -2.0382 41 1 8.8332 9.5351 -3.7893 42 1 10.7616 11.6350 -3.7314 43 1 6.0477 10.6960 -1.4862 44 1 5.3497 11.6623 -2.8131 45 1 4.7235 9.7061 -4.0481 46 1 4.2443 9.3743 -2.3699 47 1 5.9236 2.6170 1.0279 48 1 5.9714 1.7295 -0.5142 49 1 5.8756 3.5069 -0.5128 50 1 4.0207 0.3800 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333348641.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:48 Heat of formation + Delta-G solvation = -36.498288 kcal Electronic energy + Delta-G solvation = -29078.497167 eV Core-core repulsion = 25070.805092 eV Total energy + Delta-G solvation = -4007.692075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.42771 -40.58714 -39.39351 -38.57303 -36.34730 -34.51084 -33.63512 -33.20362 -32.49167 -31.40840 -29.75222 -28.58061 -27.45937 -27.24518 -25.62084 -24.35777 -23.30286 -22.79917 -21.99753 -21.12989 -19.49197 -18.68410 -18.35402 -17.55575 -17.38169 -17.19478 -16.92112 -16.63615 -16.26269 -15.99534 -15.70368 -15.42172 -15.19215 -15.09368 -14.88730 -14.73077 -14.39595 -14.19517 -14.17717 -13.89766 -13.64918 -13.25954 -13.18699 -13.06123 -12.96710 -12.83203 -12.80253 -12.68405 -12.59670 -12.27044 -12.18860 -12.06781 -11.80865 -11.69743 -11.68892 -11.26271 -10.94928 -10.68753 -10.03921 -9.71606 -9.63887 -9.01903 -8.74103 -7.88308 -5.29101 0.38413 0.43183 1.22277 1.46209 1.48688 1.58331 1.71648 2.37104 2.45038 2.51311 2.86591 3.29125 3.64056 3.73380 3.82610 3.87754 3.95781 3.98848 4.14017 4.19157 4.32221 4.37032 4.38271 4.42948 4.46363 4.55337 4.61194 4.67353 4.68776 4.74235 4.77166 4.79481 4.84826 4.86022 4.93984 5.03709 5.12133 5.18862 5.23165 5.35349 5.39455 5.41799 5.47663 5.49788 5.62346 5.68797 5.78748 5.84897 6.18446 6.34501 6.46023 6.64769 7.14241 7.32775 7.84484 8.37766 9.20290 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.032545 B = 0.001718 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.149419 B =16296.363990 C =16626.914207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.114 3.886 4 C -0.219 4.219 5 C -0.072 4.072 6 C -0.116 4.116 7 C -0.093 4.093 8 C 0.512 3.488 9 O -0.580 6.580 10 N -0.714 5.714 11 C 0.169 3.831 12 C -0.138 4.138 13 C -0.142 4.142 14 C 0.205 3.795 15 N -0.615 5.615 16 C -0.256 4.256 17 H 0.070 0.930 18 C -0.054 4.054 19 N -0.939 5.939 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.138 3.862 25 C -0.084 4.084 26 C -0.041 4.041 27 C -0.116 4.116 28 C -0.173 4.173 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.414 0.586 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.111 0.889 40 H 0.016 0.984 41 H 0.055 0.945 42 H 0.249 0.751 43 H 0.031 0.969 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.759 -19.437 12.185 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.238 4.238 5 C -0.090 4.090 6 C -0.117 4.117 7 C -0.132 4.132 8 C 0.300 3.700 9 O -0.460 6.460 10 N -0.366 5.366 11 C 0.045 3.955 12 C -0.139 4.139 13 C -0.163 4.163 14 C 0.080 3.920 15 N -0.339 5.339 16 C -0.386 4.386 17 H 0.088 0.912 18 C -0.249 4.249 19 N -0.586 5.586 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.013 3.987 25 C -0.122 4.122 26 C -0.041 4.041 27 C -0.172 4.172 28 C -0.191 4.191 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.250 0.750 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.743 -20.107 11.498 29.177 hybrid contribution 0.691 0.941 -0.686 1.354 sum -17.052 -19.166 10.812 27.839 Atomic orbital electron populations 1.23319 0.76555 1.05484 1.02158 1.86030 1.23423 1.27004 1.88795 1.19187 0.92552 0.84737 0.96587 1.21396 1.00948 0.91963 1.09471 1.21075 0.93860 0.97943 0.96154 1.19288 0.93691 0.93921 1.04778 1.20681 1.04091 0.95567 0.92845 1.21117 0.76479 0.80366 0.92048 1.90713 1.54678 1.52700 1.47890 1.46055 1.60134 1.21124 1.09284 1.20162 0.98904 0.92583 0.83840 1.20609 0.94234 0.94789 1.04228 1.22932 0.95933 0.99192 0.98228 1.19401 0.91371 0.83271 0.97992 1.44407 1.16922 1.20596 1.52006 1.19547 0.91139 1.09402 1.18491 0.91239 1.25712 0.96456 1.01300 1.01387 1.70167 0.99943 1.50010 1.38440 0.85219 0.77955 0.77936 0.79435 1.19192 1.21887 1.21944 1.21191 0.86247 0.96724 0.94527 1.20722 0.97239 0.92775 1.01489 1.19743 0.96854 0.91761 0.95759 1.20870 0.89950 1.02957 1.03467 1.20418 0.91833 0.98421 1.08447 0.86355 0.91487 0.92198 0.83616 0.83978 0.85801 0.85236 0.74969 0.91759 0.92476 0.87082 0.96669 0.92671 0.94148 0.95103 0.92342 0.92075 0.89201 0.88712 0.91181 0.92043 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.65 10.50 -92.47 -0.97 -7.62 16 3 C 0.11 2.45 6.69 22.50 0.15 2.60 16 4 C -0.22 -4.07 9.04 22.36 0.20 -3.87 16 5 C -0.07 -1.34 9.67 22.25 0.22 -1.13 16 6 C -0.12 -2.30 4.37 -19.85 -0.09 -2.39 16 7 C -0.09 -1.43 5.15 29.10 0.15 -1.28 16 8 C 0.51 11.78 7.04 87.66 0.62 12.40 16 9 O -0.58 -18.79 16.03 -3.04 -0.05 -18.84 16 10 N -0.71 -15.30 5.55 -466.78 -2.59 -17.89 16 11 C 0.17 4.53 5.66 85.63 0.48 5.01 16 12 C -0.14 -4.29 5.22 -15.13 -0.08 -4.37 16 13 C -0.14 -5.16 9.47 27.11 0.26 -4.90 16 14 C 0.20 9.68 5.23 85.42 0.45 10.12 16 15 N -0.62 -30.16 3.01 -703.03 -2.11 -32.27 16 16 C -0.26 -13.90 9.71 84.04 0.82 -13.09 16 17 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 18 C -0.05 -2.98 5.01 84.86 0.43 -2.55 16 19 N -0.94 -54.84 11.08 21.65 0.24 -54.60 16 20 Si 0.97 44.76 29.58 68.60 2.03 46.79 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.14 5.32 6.59 86.31 0.57 5.89 16 25 C -0.08 -2.58 5.95 29.71 0.18 -2.41 16 26 C -0.04 -0.86 5.88 -19.88 -0.12 -0.97 16 27 C -0.12 -1.99 9.21 71.24 0.66 -1.33 16 28 C -0.17 -3.78 9.64 22.37 0.22 -3.57 16 29 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 31 H 0.06 0.58 7.66 -2.39 -0.02 0.57 16 32 H 0.15 1.95 6.30 -2.91 -0.02 1.93 16 33 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.12 1.40 6.98 -2.38 -0.02 1.38 16 35 H 0.13 1.26 8.05 -2.39 -0.02 1.24 16 36 H 0.41 7.01 8.46 -92.71 -0.78 6.23 16 37 H 0.06 1.79 8.11 -2.38 -0.02 1.77 16 38 H 0.06 1.66 7.78 -2.39 -0.02 1.64 16 39 H 0.11 3.61 7.73 -2.91 -0.02 3.59 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 2.99 6.41 -2.39 -0.02 2.97 16 42 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 2.20 7.96 -2.39 -0.02 2.18 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 46 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 49 H 0.06 1.14 6.15 -2.39 -0.01 1.13 16 50 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -72.86 404.91 2.92 -69.95 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.16 Total: 19.01 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 6.21 Total: -4.51 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -4.46 Total: -104.77 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.02 Total: -26.47 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -72.86 2.92 -69.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333348641.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.448 kcal (2) G-P(sol) polarization free energy of solvation -72.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds