Wall clock time and date at job start Wed Apr 1 2020 04:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00211 * 2 1 4 4 C 1.38217 * 119.99934 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00117 * 359.97438 * 4 3 2 6 6 C 1.38216 * 119.99736 * 359.97438 * 5 4 3 7 7 C 1.38220 * 119.99730 * 180.17203 * 2 1 3 8 8 C 1.50697 * 119.99997 * 0.06541 * 7 2 1 9 9 H 1.09006 * 109.47286 * 325.20669 * 8 7 2 10 10 C 1.53000 * 109.47423 * 85.21210 * 8 7 2 11 11 N 1.46507 * 109.46993 * 205.21316 * 8 7 2 12 12 C 1.34771 * 120.00225 * 154.99680 * 11 8 7 13 13 O 1.21347 * 120.00062 * 0.02562 * 12 11 8 14 14 C 1.49450 * 120.00135 * 179.97438 * 12 11 8 15 15 O 1.21349 * 119.99732 * 6.40231 * 14 12 11 16 16 N 1.34773 * 119.99955 * 186.40115 * 14 12 11 17 17 C 1.46916 * 120.63390 * 7.08797 * 16 14 12 18 18 C 1.53190 * 108.77660 * 233.58678 * 17 16 14 19 19 C 1.53044 * 109.31131 * 305.36007 * 18 17 16 20 20 C 1.53038 * 109.53520 * 61.36769 * 19 18 17 21 21 H 1.09004 * 109.49924 * 58.58815 * 20 19 18 22 22 C 1.50704 * 109.49918 * 178.67996 * 20 19 18 23 23 H 1.08001 * 119.99519 * 359.97438 * 22 20 19 24 24 C 1.37875 * 120.00145 * 180.02562 * 22 20 19 25 25 N 1.31518 * 119.99860 * 359.97438 * 24 22 20 26 26 Si 1.86794 * 119.99954 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47484 * 89.99750 * 26 24 22 28 28 H 1.48503 * 109.47097 * 210.00119 * 26 24 22 29 29 H 1.48501 * 109.47201 * 329.99682 * 26 24 22 30 30 C 1.46926 * 120.62772 * 186.80698 * 16 14 12 31 31 H 1.09003 * 109.47029 * 89.99818 * 1 2 3 32 32 H 1.09001 * 109.47131 * 209.99772 * 1 2 3 33 33 H 1.08999 * 109.46740 * 329.99926 * 1 2 3 34 34 H 1.07997 * 119.99745 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.99550 * 179.97438 * 4 3 2 36 36 H 1.07996 * 120.00194 * 179.97438 * 5 4 3 37 37 H 1.08006 * 119.99221 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.46932 * 179.97438 * 10 8 7 39 39 H 1.09003 * 109.46926 * 299.99881 * 10 8 7 40 40 H 1.09000 * 109.46979 * 59.99671 * 10 8 7 41 41 H 0.97007 * 119.99744 * 334.99995 * 11 8 7 42 42 H 1.09003 * 109.58441 * 353.37418 * 17 16 14 43 43 H 1.08997 * 109.58952 * 113.65533 * 17 16 14 44 44 H 1.09001 * 109.50286 * 65.31399 * 18 17 16 45 45 H 1.09008 * 109.49984 * 185.41302 * 18 17 16 46 46 H 1.09000 * 109.45851 * 181.38368 * 19 18 17 47 47 H 1.08998 * 109.46473 * 301.35775 * 19 18 17 48 48 H 0.97002 * 119.99767 * 179.97438 * 25 24 22 49 49 H 1.08997 * 109.59036 * 246.20274 * 30 16 14 50 50 H 1.09004 * 109.59062 * 6.62890 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1970 0.0027 7 6 2.1981 -1.1971 -0.0036 8 6 1.4445 -2.5021 -0.0090 9 1 0.5313 -2.3968 0.5769 10 6 1.0866 -2.8785 -1.4481 11 7 2.2820 -3.5520 0.5765 12 6 1.7100 -4.6350 1.1388 13 8 0.5014 -4.7408 1.1598 14 6 2.5644 -5.7062 1.7356 15 8 3.7647 -5.5490 1.8187 16 7 2.0016 -6.8468 2.1814 17 6 0.5767 -7.1191 1.9491 18 6 -0.0895 -7.4381 3.2912 19 6 0.6660 -8.5817 3.9721 20 6 2.1105 -8.1528 4.2398 21 1 2.1152 -7.2626 4.8688 22 6 2.8448 -9.2675 4.9394 23 1 2.3325 -10.1898 5.1707 24 6 4.1701 -9.1096 5.2852 25 7 4.7936 -7.9863 5.0039 26 14 5.0803 -10.4915 6.1517 27 1 5.7073 -11.3812 5.1415 28 1 6.1333 -9.9178 7.0277 29 1 4.1239 -11.2743 6.9750 30 6 2.8029 -7.8444 2.9035 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6583 2.1326 0.0004 35 1 4.1205 2.1326 0.0001 36 1 5.3517 -0.0002 0.0016 37 1 4.1207 -2.1324 0.0039 38 1 0.5420 -3.8226 -1.4520 39 1 0.4635 -2.0973 -1.8837 40 1 1.9998 -2.9837 -2.0340 41 1 3.2482 -3.4675 0.5594 42 1 0.1046 -6.2422 1.5061 43 1 0.4722 -7.9697 1.2756 44 1 -0.0642 -6.5546 3.9291 45 1 -1.1244 -7.7357 3.1220 46 1 0.1793 -8.8271 4.9160 47 1 0.6617 -9.4572 3.3229 48 1 5.7260 -7.8751 5.2475 49 1 2.8763 -8.7545 2.3083 50 1 3.8002 -7.4462 3.0905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336638649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:48 Heat of formation + Delta-G solvation = -35.090397 kcal Electronic energy + Delta-G solvation = -30550.179642 eV Core-core repulsion = 26542.548617 eV Total energy + Delta-G solvation = -4007.631024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81133 -39.83364 -38.26015 -36.85904 -35.78304 -33.39438 -33.16629 -31.77257 -31.43808 -29.74363 -29.61767 -27.21320 -26.03133 -25.00714 -24.20657 -23.01349 -21.87270 -21.64698 -20.61961 -20.09391 -18.83510 -17.57234 -16.86469 -16.56450 -16.07774 -15.77001 -15.48307 -15.32236 -14.93458 -14.59848 -14.51355 -14.40926 -13.90319 -13.72605 -13.58770 -13.39003 -13.30325 -13.06774 -12.78609 -12.59196 -12.56184 -12.37241 -12.17559 -12.07432 -11.88984 -11.75412 -11.37270 -11.26610 -10.98288 -10.88666 -10.68172 -10.47139 -10.27720 -10.05477 -9.88156 -9.38895 -9.20659 -9.10833 -9.05902 -8.84083 -8.52680 -8.41286 -7.81939 -6.01839 -4.09860 1.05562 1.12392 1.78384 2.67402 3.30353 3.37529 3.40165 3.48105 3.64249 3.95001 4.27550 4.41957 4.54829 4.62945 4.68916 4.77695 4.93584 5.02479 5.07613 5.25743 5.28778 5.30636 5.38697 5.46109 5.52894 5.65524 5.66042 5.70385 5.73980 5.82865 5.91533 5.98783 6.06337 6.20319 6.25894 6.27177 6.36374 6.40321 6.60472 6.64002 6.72696 6.76296 6.87476 6.99880 7.05481 7.17978 7.23607 7.59110 7.83092 7.95492 7.98792 8.16510 8.35544 8.57698 8.94133 9.55619 11.03850 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.002598 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.676261 B =10773.138833 C =11920.944410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.110 4.110 7 C -0.092 4.092 8 C 0.179 3.821 9 H 0.105 0.895 10 C -0.158 4.158 11 N -0.701 5.701 12 C 0.515 3.485 13 O -0.514 6.514 14 C 0.494 3.506 15 O -0.525 6.525 16 N -0.566 5.566 17 C 0.050 3.950 18 C -0.127 4.127 19 C -0.113 4.113 20 C 0.041 3.959 21 H 0.030 0.970 22 C -0.519 4.519 23 H 0.059 0.941 24 C 0.062 3.938 25 N -0.882 5.882 26 Si 0.894 3.106 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 C 0.108 3.892 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.411 0.589 42 H 0.144 0.856 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.263 0.737 49 H 0.048 0.952 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.293 17.127 -13.787 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.075 4.075 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.136 4.136 6 C -0.128 4.128 7 C -0.093 4.093 8 C 0.075 3.925 9 H 0.122 0.878 10 C -0.216 4.216 11 N -0.356 5.356 12 C 0.298 3.702 13 O -0.391 6.391 14 C 0.275 3.725 15 O -0.403 6.403 16 N -0.298 5.298 17 C -0.072 4.072 18 C -0.165 4.165 19 C -0.151 4.151 20 C 0.022 3.978 21 H 0.048 0.952 22 C -0.557 4.557 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.520 5.520 26 Si 0.721 3.279 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.199 1.199 30 C -0.011 4.011 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.250 0.750 42 H 0.160 0.840 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.328 17.190 -13.693 23.167 hybrid contribution 1.142 -0.779 0.565 1.493 sum -6.186 16.412 -13.128 21.908 Atomic orbital electron populations 1.20925 0.91036 1.03330 1.02599 1.19660 0.96118 0.92215 0.99495 1.21010 0.94288 0.97298 1.01016 1.21164 0.94319 0.98110 0.99943 1.21131 1.00120 0.92266 1.00130 1.20953 0.93489 0.98513 0.99863 1.19732 0.93880 0.93905 1.01756 1.19926 0.93878 0.83326 0.95418 0.87750 1.22151 1.02231 1.02554 0.94648 1.46083 1.11591 1.19987 1.57942 1.20798 0.88312 0.83357 0.77750 1.90289 1.14757 1.76320 1.57755 1.19739 0.87753 0.83622 0.81353 1.90754 1.14135 1.79200 1.56165 1.48439 1.11307 1.17747 1.52284 1.23080 0.80964 1.05073 0.98080 1.21853 0.98283 0.99817 0.96579 1.21670 0.98150 0.96362 0.98937 1.19050 0.89660 0.97124 0.91976 0.95220 1.21099 0.95810 1.00949 1.37877 0.92253 1.25062 0.97747 0.95670 0.95610 1.69881 1.11272 1.24367 1.46491 0.86566 0.79527 0.82159 0.79601 1.20628 1.21202 1.19914 1.22579 0.98211 0.88144 0.92196 0.90809 0.90863 0.91327 0.85923 0.86008 0.85762 0.85864 0.91285 0.91197 0.92043 0.74969 0.83979 0.92748 0.92342 0.92289 0.93085 0.93250 0.92652 0.93360 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.41 36.01 0.34 -0.54 16 2 C -0.07 -0.68 5.88 -104.62 -0.62 -1.30 16 3 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 4 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 6 C -0.11 -1.13 9.24 -39.58 -0.37 -1.49 16 7 C -0.09 -0.95 5.06 -104.62 -0.53 -1.48 16 8 C 0.18 1.95 2.29 -69.08 -0.16 1.79 16 9 H 0.10 1.20 5.59 -51.93 -0.29 0.91 16 10 C -0.16 -1.48 9.47 37.16 0.35 -1.13 16 11 N -0.70 -9.40 4.99 -55.36 -0.28 -9.67 16 12 C 0.51 8.53 7.74 -11.59 -0.09 8.44 16 13 O -0.51 -8.62 12.76 5.50 0.07 -8.55 16 14 C 0.49 10.07 7.74 -11.59 -0.09 9.98 16 15 O -0.53 -12.02 15.94 5.50 0.09 -11.93 16 16 N -0.57 -11.90 2.97 -173.02 -0.51 -12.42 16 17 C 0.05 0.89 6.27 -3.72 -0.02 0.87 16 18 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 19 C -0.11 -2.36 5.10 -26.69 -0.14 -2.50 16 20 C 0.04 1.03 2.26 -91.43 -0.21 0.82 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 22 C -0.52 -14.12 8.56 -34.44 -0.29 -14.41 16 23 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 24 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 25 N -0.88 -25.54 11.41 55.43 0.63 -24.91 16 26 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 30 C 0.11 2.65 5.41 -3.49 -0.02 2.63 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.57 6.03 -51.93 -0.31 0.25 16 33 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.21 6.07 -52.48 -0.32 0.89 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.54 7.95 -51.93 -0.41 0.12 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.41 5.34 5.69 -40.82 -0.23 5.11 16 42 H 0.14 2.45 3.78 -56.76 -0.21 2.24 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.12 3.42 5.20 -51.93 -0.27 3.15 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -31.00 394.58 -9.86 -40.85 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.51 Total: 7.82 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.27 Total: -3.37 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.16 Total: -47.00 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.16 Total: -20.48 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.00 -9.86 -40.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336638649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.760 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds